Iron in PDB 7koe: Electron Bifurcating Flavoprotein Fix/Etfabcx

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iron atom in the Electron Bifurcating Flavoprotein Fix/Etfabcx (pdb code 7koe). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the Electron Bifurcating Flavoprotein Fix/Etfabcx, PDB code: 7koe:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 16 in 7koe

Go back to Iron Binding Sites List in 7koe
Iron binding site 1 out of 16 in the Electron Bifurcating Flavoprotein Fix/Etfabcx


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Electron Bifurcating Flavoprotein Fix/Etfabcx within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe601

b:11.6
occ:1.00
FE1 D:SF4601 0.0 11.6 1.0
SG D:CYS499 1.8 11.7 1.0
S4 D:SF4601 2.1 11.6 1.0
S2 D:SF4601 2.1 11.6 1.0
S3 D:SF4601 2.1 11.6 1.0
CB D:CYS499 2.9 11.7 1.0
FE4 D:SF4601 3.0 11.6 1.0
FE3 D:SF4601 3.0 11.6 1.0
FE2 D:SF4601 3.0 11.6 1.0
CA D:CYS499 3.2 11.7 1.0
N D:LEU500 3.6 11.0 1.0
S1 D:SF4601 3.7 11.6 1.0
C D:CYS499 3.8 11.7 1.0
N D:GLU501 3.8 10.5 1.0
CD1 D:LEU459 4.3 10.2 1.0
CG2 D:VAL484 4.3 9.7 1.0
CA D:GLU501 4.5 10.5 1.0
N D:CYS499 4.6 11.7 1.0
SG D:CYS505 4.6 9.4 1.0
SG D:CYS480 4.6 15.0 1.0
CD2 D:LEU459 4.6 10.2 1.0
CA D:LEU500 4.7 11.0 1.0
C D:LEU500 4.7 11.0 1.0
SG D:CYS502 4.7 10.4 1.0
N D:CYS502 4.8 10.4 1.0
O D:CYS499 4.8 11.7 1.0
CB D:VAL484 5.0 9.7 1.0

Iron binding site 2 out of 16 in 7koe

Go back to Iron Binding Sites List in 7koe
Iron binding site 2 out of 16 in the Electron Bifurcating Flavoprotein Fix/Etfabcx


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Electron Bifurcating Flavoprotein Fix/Etfabcx within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe601

b:11.6
occ:1.00
FE2 D:SF4601 0.0 11.6 1.0
SG D:CYS502 1.8 10.4 1.0
S3 D:SF4601 2.1 11.6 1.0
S1 D:SF4601 2.1 11.6 1.0
S4 D:SF4601 2.1 11.6 1.0
FE3 D:SF4601 3.0 11.6 1.0
FE1 D:SF4601 3.0 11.6 1.0
FE4 D:SF4601 3.0 11.6 1.0
CB D:CYS502 3.4 10.4 1.0
N D:CYS502 3.4 10.4 1.0
N D:GLY503 3.6 10.0 1.0
S2 D:SF4601 3.7 11.6 1.0
CA D:CYS502 3.9 10.4 1.0
CG D:PRO481 4.1 12.1 1.0
CD D:PRO481 4.2 12.1 1.0
N D:THR504 4.2 10.8 1.0
C D:CYS502 4.3 10.4 1.0
N D:GLU501 4.3 10.5 1.0
SG D:CYS499 4.4 11.7 1.0
C D:GLU501 4.5 10.5 1.0
SG D:CYS480 4.6 15.0 1.0
N D:LEU500 4.6 11.0 1.0
CA D:GLY503 4.7 10.0 1.0
SG D:CYS505 4.7 9.4 1.0
C D:LEU500 4.7 11.0 1.0
CB D:THR504 4.7 10.8 1.0
CA D:GLU501 4.8 10.5 1.0
OG1 D:THR504 4.8 10.8 1.0
CB D:LEU500 4.9 11.0 1.0
C D:GLY503 4.9 10.0 1.0
CA D:LEU500 5.0 11.0 1.0

Iron binding site 3 out of 16 in 7koe

Go back to Iron Binding Sites List in 7koe
Iron binding site 3 out of 16 in the Electron Bifurcating Flavoprotein Fix/Etfabcx


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Electron Bifurcating Flavoprotein Fix/Etfabcx within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe601

b:11.6
occ:1.00
FE3 D:SF4601 0.0 11.6 1.0
SG D:CYS505 1.8 9.4 1.0
S1 D:SF4601 2.1 11.6 1.0
S4 D:SF4601 2.1 11.6 1.0
S2 D:SF4601 2.1 11.6 1.0
FE2 D:SF4601 3.0 11.6 1.0
FE4 D:SF4601 3.0 11.6 1.0
FE1 D:SF4601 3.0 11.6 1.0
CB D:CYS505 3.1 9.4 1.0
N D:CYS505 3.6 9.4 1.0
S3 D:SF4601 3.7 11.6 1.0
NE1 D:TRP516 3.9 7.4 1.0
CA D:CYS505 4.0 9.4 1.0
CD1 D:TRP516 4.3 7.4 1.0
SG D:CYS499 4.3 11.7 1.0
N D:THR504 4.3 10.8 1.0
CE2 D:TYR485 4.4 10.5 1.0
SG D:CYS480 4.4 15.0 1.0
SG D:CYS502 4.5 10.4 1.0
N D:GLY503 4.5 10.0 1.0
CD2 D:LEU459 4.6 10.2 1.0
CA D:GLY503 4.7 10.0 1.0
C D:GLY503 4.7 10.0 1.0
C D:THR504 4.8 10.8 1.0
OH D:TYR485 4.9 10.5 1.0
N D:ARG506 4.9 11.9 1.0
C D:CYS505 5.0 9.4 1.0

Iron binding site 4 out of 16 in 7koe

Go back to Iron Binding Sites List in 7koe
Iron binding site 4 out of 16 in the Electron Bifurcating Flavoprotein Fix/Etfabcx


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Electron Bifurcating Flavoprotein Fix/Etfabcx within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe601

b:11.6
occ:1.00
FE4 D:SF4601 0.0 11.6 1.0
SG D:CYS480 1.7 15.0 1.0
S2 D:SF4601 2.1 11.6 1.0
S1 D:SF4601 2.1 11.6 1.0
S3 D:SF4601 2.1 11.6 1.0
FE3 D:SF4601 3.0 11.6 1.0
FE1 D:SF4601 3.0 11.6 1.0
FE2 D:SF4601 3.0 11.6 1.0
CB D:CYS480 3.4 15.0 1.0
S4 D:SF4601 3.7 11.6 1.0
CA D:CYS480 3.9 15.0 1.0
CD D:PRO481 4.0 12.1 1.0
CG2 D:VAL484 4.1 9.7 1.0
CB D:VAL484 4.1 9.7 1.0
N D:PRO481 4.4 12.1 1.0
C D:CYS480 4.4 15.0 1.0
SG D:CYS505 4.5 9.4 1.0
N D:ALA482 4.5 13.9 1.0
SG D:CYS502 4.5 10.4 1.0
CG D:PRO481 4.6 12.1 1.0
CB D:ALA482 4.6 13.9 1.0
CE2 D:TYR485 4.7 10.5 1.0
SG D:CYS499 4.8 11.7 1.0
CD2 D:TYR485 4.9 10.5 1.0
N D:VAL484 4.9 9.7 1.0
CB D:CYS505 4.9 9.4 1.0
CG1 D:VAL484 4.9 9.7 1.0

Iron binding site 5 out of 16 in 7koe

Go back to Iron Binding Sites List in 7koe
Iron binding site 5 out of 16 in the Electron Bifurcating Flavoprotein Fix/Etfabcx


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Electron Bifurcating Flavoprotein Fix/Etfabcx within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe602

b:23.7
occ:1.00
FE1 D:SF4602 0.0 23.7 1.0
SG D:CYS467 1.8 26.3 1.0
S3 D:SF4602 2.1 23.7 1.0
S4 D:SF4602 2.1 23.7 1.0
S2 D:SF4602 2.1 23.7 1.0
CB D:CYS467 2.7 26.3 1.0
FE2 D:SF4602 3.0 23.7 1.0
FE3 D:SF4602 3.0 23.7 1.0
FE4 D:SF4602 3.0 23.7 1.0
CA D:CYS467 3.1 26.3 1.0
ND2 D:ASN513 3.5 18.5 1.0
N D:CYS467 3.6 26.3 1.0
S1 D:SF4602 3.7 23.7 1.0
OD1 D:ASN513 4.1 18.5 1.0
CG D:ASN513 4.2 18.5 1.0
C D:ILE466 4.2 23.4 1.0
SG D:CYS471 4.3 31.7 1.0
C D:CYS467 4.5 26.3 1.0
O D:ILE466 4.5 23.4 1.0
SG D:CYS509 4.6 17.4 1.0
CB D:CYS471 4.7 31.7 1.0
SG D:CYS476 4.8 18.3 1.0
O D:CYS467 4.8 26.3 1.0
CE D:MET492 4.9 23.5 1.0

Iron binding site 6 out of 16 in 7koe

Go back to Iron Binding Sites List in 7koe
Iron binding site 6 out of 16 in the Electron Bifurcating Flavoprotein Fix/Etfabcx


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Electron Bifurcating Flavoprotein Fix/Etfabcx within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe602

b:23.7
occ:1.00
FE2 D:SF4602 0.0 23.7 1.0
SG D:CYS471 1.8 31.7 1.0
S1 D:SF4602 2.1 23.7 1.0
S3 D:SF4602 2.1 23.7 1.0
S4 D:SF4602 2.1 23.7 1.0
FE1 D:SF4602 3.0 23.7 1.0
FE3 D:SF4602 3.0 23.7 1.0
FE4 D:SF4602 3.0 23.7 1.0
CB D:CYS471 3.2 31.7 1.0
S2 D:SF4602 3.7 23.7 1.0
CD D:PRO475 3.9 19.0 1.0
SG D:CYS509 4.1 17.4 1.0
CA D:ARG474 4.1 24.7 1.0
SG D:CYS476 4.4 18.3 1.0
CA D:CYS471 4.5 31.7 1.0
CD D:PRO510 4.6 16.7 1.0
CG D:ARG474 4.7 24.7 1.0
N D:PRO475 4.7 19.0 1.0
CD2 D:PHE511 4.7 20.2 1.0
SG D:CYS467 4.7 26.3 1.0
CA D:CYS467 4.7 26.3 1.0
N D:ARG474 4.8 24.7 1.0
CG D:PRO475 4.8 19.0 1.0
C D:ARG474 4.8 24.7 1.0
CB D:ARG474 4.8 24.7 1.0
CE2 D:PHE511 5.0 20.2 1.0
CB D:CYS467 5.0 26.3 1.0

Iron binding site 7 out of 16 in 7koe

Go back to Iron Binding Sites List in 7koe
Iron binding site 7 out of 16 in the Electron Bifurcating Flavoprotein Fix/Etfabcx


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Electron Bifurcating Flavoprotein Fix/Etfabcx within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe602

b:23.7
occ:1.00
FE3 D:SF4602 0.0 23.7 1.0
SG D:CYS476 2.0 18.3 1.0
S4 D:SF4602 2.1 23.7 1.0
S2 D:SF4602 2.1 23.7 1.0
S1 D:SF4602 2.1 23.7 1.0
FE1 D:SF4602 3.0 23.7 1.0
FE2 D:SF4602 3.0 23.7 1.0
FE4 D:SF4602 3.0 23.7 1.0
CB D:CYS476 3.1 18.3 1.0
S3 D:SF4602 3.7 23.7 1.0
SG D:CYS509 3.7 17.4 1.0
N D:CYS476 4.2 18.3 1.0
CA D:CYS476 4.3 18.3 1.0
SG D:CYS467 4.3 26.3 1.0
CE D:MET492 4.4 23.5 1.0
CD1 D:ILE514 4.4 12.0 1.0
CB D:CYS509 4.8 17.4 1.0
SG D:CYS471 4.8 31.7 1.0
CG1 D:ILE514 4.8 12.0 1.0

Iron binding site 8 out of 16 in 7koe

Go back to Iron Binding Sites List in 7koe
Iron binding site 8 out of 16 in the Electron Bifurcating Flavoprotein Fix/Etfabcx


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Electron Bifurcating Flavoprotein Fix/Etfabcx within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe602

b:23.7
occ:1.00
FE4 D:SF4602 0.0 23.7 1.0
SG D:CYS509 1.6 17.4 1.0
S3 D:SF4602 2.1 23.7 1.0
S1 D:SF4602 2.1 23.7 1.0
S2 D:SF4602 2.1 23.7 1.0
OD1 D:ASN513 2.7 18.5 1.0
FE1 D:SF4602 3.0 23.7 1.0
FE3 D:SF4602 3.0 23.7 1.0
FE2 D:SF4602 3.0 23.7 1.0
CB D:CYS509 3.4 17.4 1.0
CG D:ASN513 3.6 18.5 1.0
S4 D:SF4602 3.7 23.7 1.0
ND2 D:ASN513 3.9 18.5 1.0
CA D:CYS509 4.2 17.4 1.0
SG D:CYS471 4.4 31.7 1.0
SG D:CYS467 4.5 26.3 1.0
CD D:PRO510 4.5 16.7 1.0
CD2 D:PHE511 4.6 20.2 1.0
N D:ASN513 4.6 18.5 1.0
CG1 D:ILE514 4.7 12.0 1.0
C D:CYS509 4.7 17.4 1.0
N D:PHE511 4.7 20.2 1.0
CB D:PHE511 4.8 20.2 1.0
O D:ASN513 4.8 18.5 1.0
N D:PRO510 4.8 16.7 1.0
CB D:ASN513 4.9 18.5 1.0
C D:ASN513 4.9 18.5 1.0
SG D:CYS476 5.0 18.3 1.0
CD1 D:ILE514 5.0 12.0 1.0

Iron binding site 9 out of 16 in 7koe

Go back to Iron Binding Sites List in 7koe
Iron binding site 9 out of 16 in the Electron Bifurcating Flavoprotein Fix/Etfabcx


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Electron Bifurcating Flavoprotein Fix/Etfabcx within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe601

b:11.6
occ:1.00
FE1 H:SF4601 0.0 11.6 1.0
SG H:CYS499 1.8 11.7 1.0
S4 H:SF4601 2.1 11.6 1.0
S2 H:SF4601 2.1 11.6 1.0
S3 H:SF4601 2.1 11.6 1.0
CB H:CYS499 2.9 11.7 1.0
FE4 H:SF4601 3.0 11.6 1.0
FE3 H:SF4601 3.0 11.6 1.0
FE2 H:SF4601 3.0 11.6 1.0
CA H:CYS499 3.2 11.7 1.0
N H:LEU500 3.6 11.0 1.0
S1 H:SF4601 3.7 11.6 1.0
C H:CYS499 3.8 11.7 1.0
N H:GLU501 3.8 10.5 1.0
CD1 H:LEU459 4.3 10.2 1.0
CG2 H:VAL484 4.3 9.7 1.0
CA H:GLU501 4.5 10.5 1.0
N H:CYS499 4.6 11.7 1.0
SG H:CYS505 4.6 9.4 1.0
SG H:CYS480 4.6 15.0 1.0
CD2 H:LEU459 4.6 10.2 1.0
CA H:LEU500 4.7 11.0 1.0
C H:LEU500 4.7 11.0 1.0
SG H:CYS502 4.7 10.4 1.0
N H:CYS502 4.8 10.4 1.0
O H:CYS499 4.8 11.7 1.0
CB H:VAL484 5.0 9.7 1.0

Iron binding site 10 out of 16 in 7koe

Go back to Iron Binding Sites List in 7koe
Iron binding site 10 out of 16 in the Electron Bifurcating Flavoprotein Fix/Etfabcx


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Electron Bifurcating Flavoprotein Fix/Etfabcx within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe601

b:11.6
occ:1.00
FE2 H:SF4601 0.0 11.6 1.0
SG H:CYS502 1.8 10.4 1.0
S3 H:SF4601 2.1 11.6 1.0
S1 H:SF4601 2.1 11.6 1.0
S4 H:SF4601 2.1 11.6 1.0
FE3 H:SF4601 3.0 11.6 1.0
FE1 H:SF4601 3.0 11.6 1.0
FE4 H:SF4601 3.0 11.6 1.0
CB H:CYS502 3.4 10.4 1.0
N H:CYS502 3.4 10.4 1.0
N H:GLY503 3.6 10.0 1.0
S2 H:SF4601 3.7 11.6 1.0
CA H:CYS502 3.9 10.4 1.0
CG H:PRO481 4.1 12.1 1.0
CD H:PRO481 4.2 12.1 1.0
N H:THR504 4.2 10.8 1.0
C H:CYS502 4.3 10.4 1.0
N H:GLU501 4.3 10.5 1.0
SG H:CYS499 4.4 11.7 1.0
C H:GLU501 4.5 10.5 1.0
SG H:CYS480 4.6 15.0 1.0
N H:LEU500 4.6 11.0 1.0
CA H:GLY503 4.7 10.0 1.0
SG H:CYS505 4.7 9.4 1.0
C H:LEU500 4.7 11.0 1.0
CB H:THR504 4.7 10.8 1.0
CA H:GLU501 4.8 10.5 1.0
OG1 H:THR504 4.8 10.8 1.0
CB H:LEU500 4.9 11.0 1.0
C H:GLY503 4.9 10.0 1.0
CA H:LEU500 5.0 11.0 1.0

Reference:

X.Feng, G.J.Schut, G.L.Lipscomb, H.Li, M.W.W.Adams. Cryoelectron Microscopy Structure and Mechanism of the Membrane-Associated Electron-Bifurcating Flavoprotein Fix/Etfabcx. Proc.Natl.Acad.Sci.Usa V. 118 2021.
ISSN: ESSN 1091-6490
PubMed: 33372143
DOI: 10.1073/PNAS.2016978118
Page generated: Sun Jan 24 17:13:25 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy