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Iron in PDB 7ksq: The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna

Enzymatic activity of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna

All present enzymatic activity of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna:
1.97.1.12;

Other elements in 7ksq:

The structure of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna also contains other interesting chemical elements:

Magnesium (Mg) 159 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna (pdb code 7ksq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna, PDB code: 7ksq:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 7ksq

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Iron binding site 1 out of 12 in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:22.8
occ:1.00
 FE1 A:SF43001 0.0 22.8 1.0
SG B:CYS559 2.2 22.0 1.0
S3 A:SF43001 2.3 22.8 1.0
S4 A:SF43001 2.3 22.8 1.0
S2 A:SF43001 2.3 22.8 1.0
FE3 A:SF43001 2.7 22.8 1.0
FE4 A:SF43001 2.7 22.8 1.0
FE2 A:SF43001 2.7 22.8 1.0
CB B:CYS559 3.0 22.0 1.0
S1 A:SF43001 3.9 22.8 1.0
SG A:CYS590 4.2 21.1 1.0
CA B:CYS559 4.5 22.0 1.0
N A:PRO584 4.5 22.4 1.0
SG B:CYS568 4.6 19.3 1.0
C A:GLY583 4.7 21.4 1.0
CD1 B:ILE702 4.7 20.9 1.0
SG A:CYS581 4.7 20.2 1.0
CD A:PRO584 4.7 22.4 1.0
CB A:PRO584 4.8 22.4 1.0
N B:GLY561 4.8 21.4 1.0
CA A:PRO584 4.8 22.4 1.0
O A:GLY583 4.9 21.4 1.0
N B:CYS559 5.0 22.0 1.0
CA B:GLY561 5.0 21.4 1.0

Iron binding site 2 out of 12 in 7ksq

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Iron binding site 2 out of 12 in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:22.8
occ:1.00
 FE2 A:SF43001 0.0 22.8 1.0
SG A:CYS590 2.2 21.1 1.0
S4 A:SF43001 2.3 22.8 1.0
S1 A:SF43001 2.3 22.8 1.0
S3 A:SF43001 2.3 22.8 1.0
FE3 A:SF43001 2.7 22.8 1.0
FE4 A:SF43001 2.7 22.8 1.0
FE1 A:SF43001 2.7 22.8 1.0
CB A:CYS590 3.0 21.1 1.0
CA A:CYS590 3.7 21.1 1.0
S2 A:SF43001 3.9 22.8 1.0
CE3 B:TRP667 4.1 18.3 1.0
CZ3 B:TRP667 4.3 18.3 1.0
N A:CYS590 4.4 21.1 1.0
SG B:CYS568 4.4 19.3 1.0
CG2 B:ILE702 4.7 20.9 1.0
NH2 A:ARG731 4.7 17.7 1.0
CB A:CYS581 4.8 20.2 1.0
CD1 B:ILE702 4.8 20.9 1.0
SG A:CYS581 4.9 20.2 1.0
SG B:CYS559 4.9 22.0 1.0
NH2 B:ARG706 5.0 19.7 1.0
C A:CYS590 5.0 21.1 1.0

Iron binding site 3 out of 12 in 7ksq

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Iron binding site 3 out of 12 in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:22.8
occ:1.00
 FE3 A:SF43001 0.0 22.8 1.0
SG B:CYS568 2.2 19.3 1.0
S2 A:SF43001 2.3 22.8 1.0
S1 A:SF43001 2.3 22.8 1.0
S4 A:SF43001 2.3 22.8 1.0
FE2 A:SF43001 2.7 22.8 1.0
FE4 A:SF43001 2.7 22.8 1.0
FE1 A:SF43001 2.7 22.8 1.0
CB B:CYS568 3.6 19.3 1.0
S3 A:SF43001 3.9 22.8 1.0
CD1 A:ILE727 4.1 19.9 1.0
CA B:CYS568 4.1 19.3 1.0
N B:CYS568 4.4 19.3 1.0
CG2 A:ILE727 4.5 19.9 1.0
SG A:CYS581 4.5 20.2 1.0
CZ3 B:TRP667 4.5 18.3 1.0
SG B:CYS559 4.6 22.0 1.0
CB B:CYS559 4.7 22.0 1.0
CG1 A:ILE727 4.8 19.9 1.0
NH2 A:ARG731 4.9 17.7 1.0
SG A:CYS590 4.9 21.1 1.0

Iron binding site 4 out of 12 in 7ksq

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Iron binding site 4 out of 12 in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:22.8
occ:1.00
 FE4 A:SF43001 0.0 22.8 1.0
SG A:CYS581 2.2 20.2 1.0
S2 A:SF43001 2.3 22.8 1.0
S3 A:SF43001 2.3 22.8 1.0
S1 A:SF43001 2.3 22.8 1.0
FE3 A:SF43001 2.7 22.8 1.0
FE2 A:SF43001 2.7 22.8 1.0
FE1 A:SF43001 2.7 22.8 1.0
CB A:CYS581 2.8 20.2 1.0
S4 A:SF43001 3.9 22.8 1.0
SG A:CYS590 4.2 21.1 1.0
CA A:GLY583 4.2 21.4 1.0
C A:GLY583 4.3 21.4 1.0
O A:GLY583 4.3 21.4 1.0
CA A:CYS581 4.3 20.2 1.0
N A:GLY583 4.4 21.4 1.0
CA A:CYS590 4.5 21.1 1.0
SG B:CYS559 4.6 22.0 1.0
CB A:CYS590 4.7 21.1 1.0
N A:CYS590 4.8 21.1 1.0
N A:CYS581 4.9 20.2 1.0
SG B:CYS568 4.9 19.3 1.0
N A:PRO584 4.9 22.4 1.0
CD B:PRO562 4.9 21.8 1.0
O A:THR589 4.9 21.6 1.0
C A:CYS581 5.0 20.2 1.0
N B:PRO562 5.0 21.8 1.0

Iron binding site 5 out of 12 in 7ksq

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Iron binding site 5 out of 12 in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1002

b:30.6
occ:1.00
 FE1 C:SF41002 0.0 30.6 1.0
SG C:CYS21 2.3 32.4 1.0
S2 C:SF41002 2.3 30.6 1.0
S3 C:SF41002 2.3 30.6 1.0
S4 C:SF41002 2.3 30.6 1.0
FE3 C:SF41002 2.7 30.6 1.0
FE2 C:SF41002 2.7 30.6 1.0
FE4 C:SF41002 2.7 30.6 1.0
CB C:CYS21 3.4 32.4 1.0
CA C:CYS21 3.7 32.4 1.0
S1 C:SF41002 3.9 30.6 1.0
CD C:PRO22 3.9 33.2 1.0
CB C:VAL25 4.1 36.9 1.0
CG2 C:VAL25 4.2 36.9 1.0
N C:PRO22 4.5 33.2 1.0
C C:CYS21 4.5 32.4 1.0
OG1 C:THR23 4.5 36.3 1.0
SG C:CYS54 4.6 25.5 1.0
SG C:CYS51 4.7 25.6 1.0
CD1 C:LEU26 4.8 35.3 1.0
CG C:LEU26 4.8 35.3 1.0
N C:CYS21 4.8 32.4 1.0
N C:VAL25 4.9 36.9 1.0
SG C:CYS48 4.9 35.3 1.0
CB C:CYS54 5.0 25.5 1.0

Iron binding site 6 out of 12 in 7ksq

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Iron binding site 6 out of 12 in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1002

b:30.6
occ:1.00
 FE2 C:SF41002 0.0 30.6 1.0
SG C:CYS54 2.3 25.5 1.0
S4 C:SF41002 2.3 30.6 1.0
S1 C:SF41002 2.3 30.6 1.0
S3 C:SF41002 2.3 30.6 1.0
FE1 C:SF41002 2.7 30.6 1.0
FE4 C:SF41002 2.7 30.6 1.0
FE3 C:SF41002 2.7 30.6 1.0
CB C:CYS54 3.5 25.5 1.0
CG2 C:VAL67 3.8 28.6 1.0
S2 C:SF41002 3.9 30.6 1.0
N C:CYS54 4.0 25.5 1.0
N C:LYS52 4.3 25.1 1.0
CA C:LYS52 4.3 25.1 1.0
CA C:CYS54 4.4 25.5 1.0
N C:ARG53 4.4 27.0 1.0
SG C:CYS48 4.7 35.3 1.0
C C:LYS52 4.7 25.1 1.0
CD1 C:LEU26 4.7 35.3 1.0
SG C:CYS51 4.8 25.6 1.0
SG C:CYS21 4.8 32.4 1.0

Iron binding site 7 out of 12 in 7ksq

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Iron binding site 7 out of 12 in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1002

b:30.6
occ:1.00
 FE3 C:SF41002 0.0 30.6 1.0
SG C:CYS51 2.3 25.6 1.0
S1 C:SF41002 2.3 30.6 1.0
S4 C:SF41002 2.3 30.6 1.0
S2 C:SF41002 2.3 30.6 1.0
FE1 C:SF41002 2.7 30.6 1.0
FE4 C:SF41002 2.7 30.6 1.0
FE2 C:SF41002 2.7 30.6 1.0
N C:CYS51 3.6 25.6 1.0
N C:LYS52 3.7 25.1 1.0
CB C:CYS51 3.8 25.6 1.0
CD C:PRO22 3.8 33.2 1.0
S3 C:SF41002 3.9 30.6 1.0
CA C:CYS51 4.0 25.6 1.0
N C:ARG53 4.1 27.0 1.0
C C:CYS51 4.2 25.6 1.0
CG2 C:VAL49 4.3 31.5 1.0
CG C:PRO22 4.4 33.2 1.0
CA C:LYS52 4.5 25.1 1.0
C C:GLY50 4.5 27.6 1.0
N C:GLY50 4.6 27.6 1.0
SG C:CYS48 4.6 35.3 1.0
CB C:ARG53 4.7 27.0 1.0
SG C:CYS54 4.7 25.5 1.0
SG C:CYS21 4.7 32.4 1.0
C C:LYS52 4.8 25.1 1.0
CA C:GLY50 4.9 27.6 1.0
N C:CYS54 5.0 25.5 1.0
CA C:ARG53 5.0 27.0 1.0

Iron binding site 8 out of 12 in 7ksq

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Iron binding site 8 out of 12 in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1002

b:30.6
occ:1.00
 FE4 C:SF41002 0.0 30.6 1.0
SG C:CYS48 2.3 35.3 1.0
S1 C:SF41002 2.3 30.6 1.0
S3 C:SF41002 2.3 30.6 1.0
S2 C:SF41002 2.3 30.6 1.0
FE1 C:SF41002 2.7 30.6 1.0
FE3 C:SF41002 2.7 30.6 1.0
FE2 C:SF41002 2.7 30.6 1.0
CB C:CYS48 3.5 35.3 1.0
S4 C:SF41002 3.9 30.6 1.0
CA C:CYS48 3.9 35.3 1.0
N C:GLY50 4.1 27.6 1.0
CG2 C:VAL25 4.2 36.9 1.0
CG2 C:VAL5 4.3 33.4 1.0
N C:VAL49 4.4 31.5 1.0
C C:CYS48 4.5 35.3 1.0
CB C:VAL25 4.5 36.9 1.0
CA C:GLY50 4.5 27.6 1.0
SG C:CYS21 4.7 32.4 1.0
N C:CYS51 4.7 25.6 1.0
CG1 C:VAL67 4.8 28.6 1.0
CG2 C:VAL67 4.8 28.6 1.0
CG1 C:VAL25 4.8 36.9 1.0
OG1 C:THR23 4.8 36.3 1.0
SG C:CYS51 4.8 25.6 1.0
SG C:CYS54 4.9 25.5 1.0

Iron binding site 9 out of 12 in 7ksq

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Iron binding site 9 out of 12 in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1003

b:37.4
occ:1.00
 FE1 C:SF41003 0.0 37.4 1.0
S4 C:SF41003 2.3 37.4 1.0
S3 C:SF41003 2.3 37.4 1.0
S2 C:SF41003 2.3 37.4 1.0
SG C:CYS58 2.3 31.8 1.0
FE2 C:SF41003 2.7 37.4 1.0
FE3 C:SF41003 2.7 37.4 1.0
FE4 C:SF41003 2.7 37.4 1.0
CB C:CYS58 3.3 31.8 1.0
CA C:CYS58 3.8 31.8 1.0
S1 C:SF41003 3.9 37.4 1.0
CB C:SER64 4.0 32.8 1.0
CG1 C:VAL65 4.2 28.7 1.0
CD C:PRO59 4.3 33.4 1.0
N C:VAL65 4.3 28.7 1.0
CB C:CYS17 4.5 32.1 1.0
OG C:SER64 4.5 32.8 1.0
SG C:CYS14 4.6 37.5 1.0
C C:CYS58 4.7 31.8 1.0
OG1 C:THR60 4.7 33.9 1.0
N C:SER64 4.7 32.8 1.0
SG C:CYS17 4.8 32.1 1.0
CB C:VAL65 4.8 28.7 1.0
CA C:SER64 4.8 32.8 1.0
N C:PRO59 4.8 33.4 1.0
N C:CYS58 4.9 31.8 1.0
SG C:CYS11 4.9 39.0 1.0

Iron binding site 10 out of 12 in 7ksq

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Iron binding site 10 out of 12 in the The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of The Structure of the Moss Psi-Lhci Reveals the Evolution of the Lhci Antenna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1003

b:37.4
occ:1.00
 FE2 C:SF41003 0.0 37.4 1.0
SG C:CYS14 2.3 37.5 1.0
S3 C:SF41003 2.3 37.4 1.0
S1 C:SF41003 2.3 37.4 1.0
S4 C:SF41003 2.3 37.4 1.0
FE3 C:SF41003 2.7 37.4 1.0
FE1 C:SF41003 2.7 37.4 1.0
FE4 C:SF41003 2.7 37.4 1.0
CB C:CYS14 3.5 37.5 1.0
N C:CYS14 3.5 37.5 1.0
CA C:CYS14 3.9 37.5 1.0
N C:THR15 3.9 35.5 1.0
S2 C:SF41003 3.9 37.4 1.0
C C:CYS14 4.1 37.5 1.0
CD C:PRO59 4.1 33.4 1.0
N C:GLN16 4.5 33.5 1.0
SG C:CYS11 4.6 39.0 1.0
C C:GLY13 4.6 39.0 1.0
SG C:CYS58 4.6 31.8 1.0
N C:CYS17 4.6 32.1 1.0
N C:GLY13 4.7 39.0 1.0
CG1 C:ILE12 4.7 39.0 1.0
SG C:CYS17 4.7 32.1 1.0
CA C:THR15 4.9 35.5 1.0
CB C:CYS17 4.9 32.1 1.0
CG C:PRO59 4.9 33.4 1.0
CA C:GLY13 4.9 39.0 1.0
C C:THR15 5.0 35.5 1.0

Reference:

C.Gorski, R.Riddle, H.Toporik, Z.Da, Z.Dobson, D.Williams, Y.Mazor. The Structure of the Physcomitrium Patens Photosystem I Reveals A Unique LHCA2 Paralogue Replacing LHCA4. Nat.Plants V. 8 307 2022.
ISSN: ESSN 2055-0278
PubMed: 35190662
DOI: 10.1038/S41477-022-01099-W
Page generated: Thu Aug 8 06:40:51 2024

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