Iron in PDB 7kvh: Human CYP3A4 Bound to An Inhibitor
Enzymatic activity of Human CYP3A4 Bound to An Inhibitor
Protein crystallography data
The structure of Human CYP3A4 Bound to An Inhibitor, PDB code: 7kvh
was solved by
I.Sevrioukova,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.55 /
2.79
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
152.944,
94.815,
93.174,
90,
123.73,
90
|
R / Rfree (%)
|
23.8 /
27.8
|
Iron Binding Sites:
The binding sites of Iron atom in the Human CYP3A4 Bound to An Inhibitor
(pdb code 7kvh). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Human CYP3A4 Bound to An Inhibitor, PDB code: 7kvh:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 7kvh
Go back to
Iron Binding Sites List in 7kvh
Iron binding site 1 out
of 2 in the Human CYP3A4 Bound to An Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Human CYP3A4 Bound to An Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:85.4
occ:1.00
|
FE
|
A:HEM601
|
0.0
|
85.4
|
1.0
|
ND
|
A:HEM601
|
2.0
|
70.6
|
1.0
|
NB
|
A:HEM601
|
2.0
|
42.1
|
1.0
|
NA
|
A:HEM601
|
2.1
|
71.0
|
1.0
|
NC
|
A:HEM601
|
2.1
|
76.0
|
1.0
|
N28
|
A:X5Y602
|
2.1
|
77.1
|
1.0
|
SG
|
A:CYS442
|
2.4
|
71.7
|
1.0
|
C27
|
A:X5Y602
|
2.8
|
70.8
|
1.0
|
C1C
|
A:HEM601
|
3.1
|
42.0
|
1.0
|
C1D
|
A:HEM601
|
3.1
|
69.4
|
1.0
|
C4B
|
A:HEM601
|
3.1
|
55.0
|
1.0
|
C4D
|
A:HEM601
|
3.1
|
81.9
|
1.0
|
C1A
|
A:HEM601
|
3.1
|
58.1
|
1.0
|
C1B
|
A:HEM601
|
3.1
|
42.5
|
1.0
|
C4C
|
A:HEM601
|
3.1
|
59.2
|
1.0
|
C4A
|
A:HEM601
|
3.1
|
42.0
|
1.0
|
C29
|
A:X5Y602
|
3.2
|
83.2
|
1.0
|
CHC
|
A:HEM601
|
3.4
|
42.4
|
1.0
|
CHD
|
A:HEM601
|
3.4
|
62.4
|
1.0
|
CB
|
A:CYS442
|
3.4
|
46.7
|
1.0
|
CHA
|
A:HEM601
|
3.4
|
41.0
|
1.0
|
CHB
|
A:HEM601
|
3.4
|
42.4
|
1.0
|
CA
|
A:CYS442
|
4.1
|
51.6
|
1.0
|
C26
|
A:X5Y602
|
4.2
|
77.3
|
1.0
|
C2C
|
A:HEM601
|
4.3
|
59.0
|
1.0
|
C3C
|
A:HEM601
|
4.3
|
53.8
|
1.0
|
C2D
|
A:HEM601
|
4.3
|
61.4
|
1.0
|
C3D
|
A:HEM601
|
4.3
|
40.7
|
1.0
|
C2A
|
A:HEM601
|
4.3
|
47.8
|
1.0
|
C3A
|
A:HEM601
|
4.3
|
49.1
|
1.0
|
C3B
|
A:HEM601
|
4.3
|
43.2
|
1.0
|
C2B
|
A:HEM601
|
4.3
|
43.1
|
1.0
|
C30
|
A:X5Y602
|
4.5
|
85.3
|
1.0
|
C31
|
A:X5Y602
|
4.8
|
81.0
|
1.0
|
C
|
A:CYS442
|
4.9
|
71.9
|
1.0
|
|
Iron binding site 2 out
of 2 in 7kvh
Go back to
Iron Binding Sites List in 7kvh
Iron binding site 2 out
of 2 in the Human CYP3A4 Bound to An Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Human CYP3A4 Bound to An Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe601
b:69.6
occ:1.00
|
FE
|
B:HEM601
|
0.0
|
69.6
|
1.0
|
ND
|
B:HEM601
|
2.0
|
66.8
|
1.0
|
NB
|
B:HEM601
|
2.1
|
53.2
|
1.0
|
NA
|
B:HEM601
|
2.1
|
52.5
|
1.0
|
NC
|
B:HEM601
|
2.1
|
66.5
|
1.0
|
N28
|
B:X5Y602
|
2.2
|
88.7
|
1.0
|
SG
|
B:CYS442
|
2.4
|
83.7
|
1.0
|
C27
|
B:X5Y602
|
2.8
|
75.5
|
1.0
|
C1D
|
B:HEM601
|
3.1
|
69.2
|
1.0
|
C1C
|
B:HEM601
|
3.1
|
54.1
|
1.0
|
C4D
|
B:HEM601
|
3.1
|
52.9
|
1.0
|
C4B
|
B:HEM601
|
3.1
|
53.7
|
1.0
|
C1B
|
B:HEM601
|
3.1
|
53.0
|
1.0
|
C4A
|
B:HEM601
|
3.1
|
52.4
|
1.0
|
C1A
|
B:HEM601
|
3.1
|
55.8
|
1.0
|
C4C
|
B:HEM601
|
3.1
|
54.1
|
1.0
|
C29
|
B:X5Y602
|
3.4
|
78.7
|
1.0
|
CHC
|
B:HEM601
|
3.4
|
54.2
|
1.0
|
CHD
|
B:HEM601
|
3.4
|
54.0
|
1.0
|
CHA
|
B:HEM601
|
3.4
|
52.5
|
1.0
|
CHB
|
B:HEM601
|
3.4
|
52.6
|
1.0
|
CB
|
B:CYS442
|
3.5
|
77.2
|
1.0
|
CA
|
B:CYS442
|
4.1
|
72.6
|
1.0
|
C26
|
B:X5Y602
|
4.2
|
77.6
|
1.0
|
C2D
|
B:HEM601
|
4.3
|
66.4
|
1.0
|
C3D
|
B:HEM601
|
4.3
|
69.3
|
1.0
|
C2C
|
B:HEM601
|
4.3
|
54.7
|
1.0
|
C2B
|
B:HEM601
|
4.3
|
53.3
|
1.0
|
C3B
|
B:HEM601
|
4.3
|
53.7
|
1.0
|
C3C
|
B:HEM601
|
4.3
|
54.7
|
1.0
|
C3A
|
B:HEM601
|
4.3
|
52.2
|
1.0
|
C2A
|
B:HEM601
|
4.3
|
54.8
|
1.0
|
C30
|
B:X5Y602
|
4.6
|
80.0
|
1.0
|
C
|
B:CYS442
|
4.9
|
83.1
|
1.0
|
C31
|
B:X5Y602
|
4.9
|
78.2
|
1.0
|
|
Reference:
I.Sevrioukova,
I.Sevrioukova.
N/A N/A.
ISSN: ESSN 1422-0067
Page generated: Thu Aug 8 06:41:26 2024
|