Iron in PDB 7ljx: Oxidized Rat Cytochrome C Mutant (K53Q)

The structure of Oxidized Rat Cytochrome C Mutant (K53Q), PDB code: 7ljx was solved by M.Huttemann, B.F.P.Edwards, J.S.Brunzelle, A.Vaishnav, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.38 / 1.31
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	52.837, 96.767, 38.372, 90, 90, 90
R / Rfree (%)	13.8 / 17

The binding sites of Iron atom in the Oxidized Rat Cytochrome C Mutant (K53Q) (pdb code 7ljx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Oxidized Rat Cytochrome C Mutant (K53Q), PDB code: 7ljx:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in the Oxidized Rat Cytochrome C Mutant (K53Q)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Oxidized Rat Cytochrome C Mutant (K53Q) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:12.9 occ:1.00 FE A:HEC201 0.0 12.9 1.0 NE2 A:HIS18 2.0 13.7 1.0 NA A:HEC201 2.0 12.6 1.0 NC A:HEC201 2.0 13.6 1.0 NB A:HEC201 2.0 12.8 1.0 ND A:HEC201 2.0 12.6 1.0 SD A:MET80 2.3 12.9 1.0 CE1 A:HIS18 3.0 12.0 1.0 C1A A:HEC201 3.0 12.9 1.0 C4D A:HEC201 3.0 13.1 1.0 C1C A:HEC201 3.0 14.1 1.0 CD2 A:HIS18 3.0 12.6 1.0 C4B A:HEC201 3.0 12.4 1.0 C1D A:HEC201 3.0 12.7 1.0 C4A A:HEC201 3.1 12.6 1.0 C1B A:HEC201 3.1 12.8 1.0 C4C A:HEC201 3.1 14.1 1.0 CG A:MET80 3.4 11.8 1.0 CE A:MET80 3.4 13.2 1.0 CHD A:HEC201 3.4 13.6 1.0 CHB A:HEC201 3.4 12.4 1.0 CHA A:HEC201 3.4 12.8 1.0 CHC A:HEC201 3.4 12.3 1.0 ND1 A:HIS18 4.1 12.6 1.0 CG A:HIS18 4.2 12.5 1.0 CB A:MET80 4.2 13.0 1.0 C2D A:HEC201 4.3 13.6 1.0 C3A A:HEC201 4.3 11.9 1.0 C2B A:HEC201 4.3 11.8 1.0 C3C A:HEC201 4.3 12.7 1.0 C3D A:HEC201 4.3 12.9 1.0 C3B A:HEC201 4.3 12.8 1.0 C2A A:HEC201 4.3 12.4 1.0 C2C A:HEC201 4.3 13.4 1.0 OH A:TYR67 4.9 19.1 1.0

Iron binding site 2 out of 3 in the Oxidized Rat Cytochrome C Mutant (K53Q)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Oxidized Rat Cytochrome C Mutant (K53Q) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:23.8 occ:0.50 FE2 A:FC6202 0.0 23.8 0.5 C21 A:FC6202 1.8 23.8 0.5 C11 A:FC6202 1.8 23.6 0.5 C23 A:FC6202 1.8 26.6 0.5 C22 A:FC6202 1.8 28.2 0.5 C24 A:FC6202 1.8 28.7 0.5 C26 A:FC6202 1.9 23.1 0.5 N11 A:FC6202 3.0 26.4 0.5 N25 A:FC6202 3.0 22.8 0.5 N22 A:FC6202 3.0 32.9 0.5 N23 A:FC6202 3.0 26.2 0.5 N24 A:FC6202 3.0 30.9 0.5 N21 A:FC6202 3.1 19.1 0.5 N A:LYS88 4.8 19.2 1.0

Iron binding site 3 out of 3 in the Oxidized Rat Cytochrome C Mutant (K53Q)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Oxidized Rat Cytochrome C Mutant (K53Q) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:13.7 occ:1.00 FE B:HEC201 0.0 13.7 1.0 NA B:HEC201 1.9 11.7 1.0 NE2 B:HIS18 2.0 13.2 1.0 NC B:HEC201 2.0 12.1 1.0 ND B:HEC201 2.0 11.9 1.0 NB B:HEC201 2.1 11.8 1.0 SD B:MET80 2.3 13.9 1.0 CE1 B:HIS18 2.9 12.4 1.0 C4A B:HEC201 3.0 13.4 1.0 C1A B:HEC201 3.0 13.4 1.0 C4C B:HEC201 3.0 13.2 1.0 CD2 B:HIS18 3.0 12.6 1.0 C1C B:HEC201 3.0 12.8 1.0 C1D B:HEC201 3.0 13.1 1.0 C1B B:HEC201 3.0 13.5 1.0 C4D B:HEC201 3.1 13.4 1.0 C4B B:HEC201 3.1 13.5 1.0 CE B:MET80 3.3 15.5 1.0 CG B:MET80 3.4 12.6 1.0 CHD B:HEC201 3.4 12.3 1.0 CHA B:HEC201 3.4 13.3 1.0 CHC B:HEC201 3.4 13.3 1.0 CHB B:HEC201 3.4 13.4 1.0 ND1 B:HIS18 4.1 12.6 1.0 CG B:HIS18 4.1 12.8 1.0 CB B:MET80 4.2 14.1 1.0 C3A B:HEC201 4.3 14.9 1.0 C3C B:HEC201 4.3 12.3 1.0 C2A B:HEC201 4.3 14.5 1.0 C2D B:HEC201 4.3 13.3 1.0 C2B B:HEC201 4.3 13.1 1.0 C2C B:HEC201 4.3 13.4 1.0 C3B B:HEC201 4.3 14.1 1.0 C3D B:HEC201 4.3 13.9 1.0 OH B:TYR67 4.9 18.3 1.0

V.Bazylianska, H.A.Kalpage, J.Wan, A.Vaishnav, G.Mahapatra, A.A.Turner, D.D.Chowdhury, K.Kim, P.T.Morse, I.Lee, J.S.Brunzelle, L.Polin, P.Subedi, E.I.Heath, I.Podgorski, K.Marcus, B.F.P.Edwards, M.Huttemann. Lysine 53 Acetylation of Cytochrome C in Prostate Cancer: Warburg Metabolism and Evasion of Apoptosis. Cells V. 10 2021.
ISSN: ESSN 2073-4409
PubMed: 33916826
DOI: 10.3390/CELLS10040802