Atomistry » Iron » PDB 7lw7-7mh8 » 7m0f
Atomistry »
  Iron »
    PDB 7lw7-7mh8 »
      7m0f »

Iron in PDB 7m0f: Dhp B in Complex with 4-Bromophenol Ligand

Protein crystallography data

The structure of Dhp B in Complex with 4-Bromophenol Ligand, PDB code: 7m0f was solved by L.M.Carey, R.A.Ghiladi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.82 / 1.48
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.641, 67.489, 67.747, 90, 90, 90
R / Rfree (%) 17.8 / 21.5

Other elements in 7m0f:

The structure of Dhp B in Complex with 4-Bromophenol Ligand also contains other interesting chemical elements:

Bromine (Br) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Dhp B in Complex with 4-Bromophenol Ligand (pdb code 7m0f). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Dhp B in Complex with 4-Bromophenol Ligand, PDB code: 7m0f:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7m0f

Go back to Iron Binding Sites List in 7m0f
Iron binding site 1 out of 2 in the Dhp B in Complex with 4-Bromophenol Ligand


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Dhp B in Complex with 4-Bromophenol Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:15.3
occ:1.00
FE A:HEM201 0.0 15.3 1.0
NC A:HEM201 2.0 15.3 1.0
NA A:HEM201 2.1 16.4 1.0
ND A:HEM201 2.1 13.4 1.0
NB A:HEM201 2.1 12.2 1.0
NE2 A:HIS89 2.2 14.1 1.0
C1C A:HEM201 3.0 11.2 1.0
C4C A:HEM201 3.1 15.2 1.0
C1A A:HEM201 3.1 13.7 1.0
C4A A:HEM201 3.1 15.4 1.0
C4B A:HEM201 3.1 13.2 1.0
C1D A:HEM201 3.1 15.8 1.0
C4D A:HEM201 3.1 15.1 1.0
C1B A:HEM201 3.1 12.2 1.0
CD2 A:HIS89 3.2 18.3 1.0
CE1 A:HIS89 3.2 18.3 1.0
CHC A:HEM201 3.4 13.6 1.0
CHA A:HEM201 3.4 14.7 1.0
CHD A:HEM201 3.4 16.3 1.0
CHB A:HEM201 3.5 14.7 1.0
C5 A:BML202 4.1 13.4 0.8
CG2 A:VAL59 4.2 12.6 1.0
C2C A:HEM201 4.3 14.9 1.0
C3C A:HEM201 4.3 18.6 1.0
C2A A:HEM201 4.3 15.6 1.0
C3A A:HEM201 4.3 17.2 1.0
ND1 A:HIS89 4.3 18.9 1.0
C2D A:HEM201 4.3 15.0 1.0
CG A:HIS89 4.3 17.1 1.0
C3B A:HEM201 4.3 13.6 1.0
C3D A:HEM201 4.3 18.1 1.0
C2B A:HEM201 4.3 13.8 1.0
CE A:MET86 4.7 19.8 0.4
C6 A:BML202 4.7 18.9 0.8
CG1 A:VAL59 4.8 12.5 1.0
C4 A:BML202 4.9 19.8 0.8
CE A:MET86 4.9 19.8 0.6
BR4 A:BML202 5.0 20.9 0.8

Iron binding site 2 out of 2 in 7m0f

Go back to Iron Binding Sites List in 7m0f
Iron binding site 2 out of 2 in the Dhp B in Complex with 4-Bromophenol Ligand


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Dhp B in Complex with 4-Bromophenol Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:14.8
occ:1.00
FE B:HEM201 0.0 14.8 1.0
NA B:HEM201 2.0 11.9 1.0
NC B:HEM201 2.1 14.9 1.0
ND B:HEM201 2.1 13.4 1.0
NB B:HEM201 2.1 14.2 1.0
NE2 B:HIS89 2.2 14.1 1.0
C1A B:HEM201 3.1 14.7 1.0
C4A B:HEM201 3.1 11.7 1.0
C4D B:HEM201 3.1 15.0 1.0
C4C B:HEM201 3.1 15.7 1.0
C1D B:HEM201 3.1 12.3 1.0
C1C B:HEM201 3.1 13.3 1.0
C4B B:HEM201 3.1 13.2 1.0
C1B B:HEM201 3.1 16.0 1.0
CD2 B:HIS89 3.2 17.0 1.0
CE1 B:HIS89 3.2 15.2 1.0
CHA B:HEM201 3.4 14.9 1.0
CHD B:HEM201 3.4 13.2 1.0
CHB B:HEM201 3.4 14.3 1.0
CHC B:HEM201 3.4 14.9 1.0
C5 B:BML202 4.0 15.6 0.7
C3A B:HEM201 4.3 13.2 1.0
C2A B:HEM201 4.3 16.1 1.0
C2D B:HEM201 4.3 17.1 1.0
C3D B:HEM201 4.3 14.4 1.0
C3C B:HEM201 4.3 13.3 1.0
C2C B:HEM201 4.3 13.0 1.0
ND1 B:HIS89 4.3 14.8 1.0
C3B B:HEM201 4.3 13.2 1.0
C2B B:HEM201 4.3 14.5 1.0
CG B:HIS89 4.3 16.5 1.0
CG2 B:VAL59 4.4 16.3 1.0
C6 B:BML202 4.6 15.4 0.7
CE B:MET86 4.8 21.6 1.0
C4 B:BML202 4.8 14.6 0.7
CG1 B:VAL59 4.8 14.1 1.0

Reference:

L.M.Carey, R.A.Ghiladi. Mechanistic and Structural Studies of 2,4-Dihalophenol: Bridging the Functional Gap Between Reactivity and Inhibition in Dehaloperoxidase To Be Published.
Page generated: Thu Aug 8 08:05:19 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy