Iron in PDB 7m0f: Dhp B in Complex with 4-Bromophenol Ligand
Protein crystallography data
The structure of Dhp B in Complex with 4-Bromophenol Ligand, PDB code: 7m0f
was solved by
L.M.Carey,
R.A.Ghiladi,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.82 /
1.48
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
59.641,
67.489,
67.747,
90,
90,
90
|
R / Rfree (%)
|
17.8 /
21.5
|
Other elements in 7m0f:
The structure of Dhp B in Complex with 4-Bromophenol Ligand also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Dhp B in Complex with 4-Bromophenol Ligand
(pdb code 7m0f). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Dhp B in Complex with 4-Bromophenol Ligand, PDB code: 7m0f:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 7m0f
Go back to
Iron Binding Sites List in 7m0f
Iron binding site 1 out
of 2 in the Dhp B in Complex with 4-Bromophenol Ligand
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Dhp B in Complex with 4-Bromophenol Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:15.3
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
15.3
|
1.0
|
NC
|
A:HEM201
|
2.0
|
15.3
|
1.0
|
NA
|
A:HEM201
|
2.1
|
16.4
|
1.0
|
ND
|
A:HEM201
|
2.1
|
13.4
|
1.0
|
NB
|
A:HEM201
|
2.1
|
12.2
|
1.0
|
NE2
|
A:HIS89
|
2.2
|
14.1
|
1.0
|
C1C
|
A:HEM201
|
3.0
|
11.2
|
1.0
|
C4C
|
A:HEM201
|
3.1
|
15.2
|
1.0
|
C1A
|
A:HEM201
|
3.1
|
13.7
|
1.0
|
C4A
|
A:HEM201
|
3.1
|
15.4
|
1.0
|
C4B
|
A:HEM201
|
3.1
|
13.2
|
1.0
|
C1D
|
A:HEM201
|
3.1
|
15.8
|
1.0
|
C4D
|
A:HEM201
|
3.1
|
15.1
|
1.0
|
C1B
|
A:HEM201
|
3.1
|
12.2
|
1.0
|
CD2
|
A:HIS89
|
3.2
|
18.3
|
1.0
|
CE1
|
A:HIS89
|
3.2
|
18.3
|
1.0
|
CHC
|
A:HEM201
|
3.4
|
13.6
|
1.0
|
CHA
|
A:HEM201
|
3.4
|
14.7
|
1.0
|
CHD
|
A:HEM201
|
3.4
|
16.3
|
1.0
|
CHB
|
A:HEM201
|
3.5
|
14.7
|
1.0
|
C5
|
A:BML202
|
4.1
|
13.4
|
0.8
|
CG2
|
A:VAL59
|
4.2
|
12.6
|
1.0
|
C2C
|
A:HEM201
|
4.3
|
14.9
|
1.0
|
C3C
|
A:HEM201
|
4.3
|
18.6
|
1.0
|
C2A
|
A:HEM201
|
4.3
|
15.6
|
1.0
|
C3A
|
A:HEM201
|
4.3
|
17.2
|
1.0
|
ND1
|
A:HIS89
|
4.3
|
18.9
|
1.0
|
C2D
|
A:HEM201
|
4.3
|
15.0
|
1.0
|
CG
|
A:HIS89
|
4.3
|
17.1
|
1.0
|
C3B
|
A:HEM201
|
4.3
|
13.6
|
1.0
|
C3D
|
A:HEM201
|
4.3
|
18.1
|
1.0
|
C2B
|
A:HEM201
|
4.3
|
13.8
|
1.0
|
CE
|
A:MET86
|
4.7
|
19.8
|
0.4
|
C6
|
A:BML202
|
4.7
|
18.9
|
0.8
|
CG1
|
A:VAL59
|
4.8
|
12.5
|
1.0
|
C4
|
A:BML202
|
4.9
|
19.8
|
0.8
|
CE
|
A:MET86
|
4.9
|
19.8
|
0.6
|
BR4
|
A:BML202
|
5.0
|
20.9
|
0.8
|
|
Iron binding site 2 out
of 2 in 7m0f
Go back to
Iron Binding Sites List in 7m0f
Iron binding site 2 out
of 2 in the Dhp B in Complex with 4-Bromophenol Ligand
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Dhp B in Complex with 4-Bromophenol Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:14.8
occ:1.00
|
FE
|
B:HEM201
|
0.0
|
14.8
|
1.0
|
NA
|
B:HEM201
|
2.0
|
11.9
|
1.0
|
NC
|
B:HEM201
|
2.1
|
14.9
|
1.0
|
ND
|
B:HEM201
|
2.1
|
13.4
|
1.0
|
NB
|
B:HEM201
|
2.1
|
14.2
|
1.0
|
NE2
|
B:HIS89
|
2.2
|
14.1
|
1.0
|
C1A
|
B:HEM201
|
3.1
|
14.7
|
1.0
|
C4A
|
B:HEM201
|
3.1
|
11.7
|
1.0
|
C4D
|
B:HEM201
|
3.1
|
15.0
|
1.0
|
C4C
|
B:HEM201
|
3.1
|
15.7
|
1.0
|
C1D
|
B:HEM201
|
3.1
|
12.3
|
1.0
|
C1C
|
B:HEM201
|
3.1
|
13.3
|
1.0
|
C4B
|
B:HEM201
|
3.1
|
13.2
|
1.0
|
C1B
|
B:HEM201
|
3.1
|
16.0
|
1.0
|
CD2
|
B:HIS89
|
3.2
|
17.0
|
1.0
|
CE1
|
B:HIS89
|
3.2
|
15.2
|
1.0
|
CHA
|
B:HEM201
|
3.4
|
14.9
|
1.0
|
CHD
|
B:HEM201
|
3.4
|
13.2
|
1.0
|
CHB
|
B:HEM201
|
3.4
|
14.3
|
1.0
|
CHC
|
B:HEM201
|
3.4
|
14.9
|
1.0
|
C5
|
B:BML202
|
4.0
|
15.6
|
0.7
|
C3A
|
B:HEM201
|
4.3
|
13.2
|
1.0
|
C2A
|
B:HEM201
|
4.3
|
16.1
|
1.0
|
C2D
|
B:HEM201
|
4.3
|
17.1
|
1.0
|
C3D
|
B:HEM201
|
4.3
|
14.4
|
1.0
|
C3C
|
B:HEM201
|
4.3
|
13.3
|
1.0
|
C2C
|
B:HEM201
|
4.3
|
13.0
|
1.0
|
ND1
|
B:HIS89
|
4.3
|
14.8
|
1.0
|
C3B
|
B:HEM201
|
4.3
|
13.2
|
1.0
|
C2B
|
B:HEM201
|
4.3
|
14.5
|
1.0
|
CG
|
B:HIS89
|
4.3
|
16.5
|
1.0
|
CG2
|
B:VAL59
|
4.4
|
16.3
|
1.0
|
C6
|
B:BML202
|
4.6
|
15.4
|
0.7
|
CE
|
B:MET86
|
4.8
|
21.6
|
1.0
|
C4
|
B:BML202
|
4.8
|
14.6
|
0.7
|
CG1
|
B:VAL59
|
4.8
|
14.1
|
1.0
|
|
Reference:
L.M.Carey,
R.A.Ghiladi.
Mechanistic and Structural Studies of 2,4-Dihalophenol: Bridging the Functional Gap Between Reactivity and Inhibition in Dehaloperoxidase To Be Published.
Page generated: Thu Aug 8 08:05:19 2024
|