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Iron in PDB 7m0h: Dhp B in Complex with 4-Chlorophenol Ligand

Protein crystallography data

The structure of Dhp B in Complex with 4-Chlorophenol Ligand, PDB code: 7m0h was solved by L.M.Carey, R.A.Ghiladi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.26 / 1.91
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.58, 67.384, 67.699, 90, 90, 90
R / Rfree (%) 18.5 / 24.5

Other elements in 7m0h:

The structure of Dhp B in Complex with 4-Chlorophenol Ligand also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Dhp B in Complex with 4-Chlorophenol Ligand (pdb code 7m0h). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Dhp B in Complex with 4-Chlorophenol Ligand, PDB code: 7m0h:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7m0h

Go back to Iron Binding Sites List in 7m0h
Iron binding site 1 out of 2 in the Dhp B in Complex with 4-Chlorophenol Ligand


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Dhp B in Complex with 4-Chlorophenol Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:18.8
occ:1.00
FE A:HEM201 0.0 18.8 1.0
NC A:HEM201 2.0 14.4 1.0
NA A:HEM201 2.0 20.0 1.0
ND A:HEM201 2.1 19.2 1.0
NB A:HEM201 2.1 17.4 1.0
NE2 A:HIS89 2.3 18.2 1.0
C1C A:HEM201 3.0 22.9 1.0
C1A A:HEM201 3.1 18.3 1.0
C4C A:HEM201 3.1 24.0 1.0
C4B A:HEM201 3.1 18.1 1.0
C4A A:HEM201 3.1 18.2 1.0
C4D A:HEM201 3.1 24.4 1.0
C1D A:HEM201 3.1 19.8 1.0
C1B A:HEM201 3.1 15.0 1.0
CD2 A:HIS89 3.2 25.4 1.0
CE1 A:HIS89 3.3 20.0 1.0
CHC A:HEM201 3.4 15.9 1.0
CHA A:HEM201 3.4 22.9 1.0
CHD A:HEM201 3.5 20.9 1.0
CHB A:HEM201 3.5 17.6 1.0
C5 A:4CH203 3.9 19.5 0.8
C2C A:HEM201 4.2 19.4 1.0
CG2 A:VAL59 4.3 17.9 1.0
C3C A:HEM201 4.3 22.2 1.0
C2A A:HEM201 4.3 15.6 1.0
C3A A:HEM201 4.3 19.7 1.0
C2D A:HEM201 4.3 27.8 1.0
C3D A:HEM201 4.3 17.9 1.0
C3B A:HEM201 4.3 17.4 1.0
C2B A:HEM201 4.3 12.6 1.0
CG A:HIS89 4.4 16.8 1.0
ND1 A:HIS89 4.4 22.5 1.0
C6 A:4CH203 4.5 26.0 0.8
C4 A:4CH203 4.7 19.9 0.8
CL9 A:4CH203 4.9 27.7 0.8
CG1 A:VAL59 4.9 13.4 1.0

Iron binding site 2 out of 2 in 7m0h

Go back to Iron Binding Sites List in 7m0h
Iron binding site 2 out of 2 in the Dhp B in Complex with 4-Chlorophenol Ligand


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Dhp B in Complex with 4-Chlorophenol Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:18.0
occ:1.00
FE B:HEM201 0.0 18.0 1.0
NC B:HEM201 2.0 16.9 1.0
NA B:HEM201 2.0 14.2 1.0
ND B:HEM201 2.1 23.2 1.0
NB B:HEM201 2.1 14.6 1.0
NE2 B:HIS89 2.3 25.2 1.0
C1C B:HEM201 3.0 16.1 1.0
C4C B:HEM201 3.0 22.9 1.0
C1A B:HEM201 3.1 23.2 1.0
C1D B:HEM201 3.1 19.5 1.0
C4A B:HEM201 3.1 17.7 1.0
C4D B:HEM201 3.1 22.4 1.0
C4B B:HEM201 3.1 17.1 1.0
C1B B:HEM201 3.1 12.3 1.0
CD2 B:HIS89 3.2 23.2 1.0
CE1 B:HIS89 3.3 25.8 1.0
CHD B:HEM201 3.4 22.2 1.0
CHC B:HEM201 3.4 17.7 1.0
CHA B:HEM201 3.5 20.3 1.0
CHB B:HEM201 3.5 15.4 1.0
C5 B:4CH203 4.1 25.8 0.9
C2C B:HEM201 4.2 16.0 1.0
C3C B:HEM201 4.2 22.8 1.0
CG2 B:VAL59 4.2 16.0 1.0
C2A B:HEM201 4.3 20.1 1.0
C3A B:HEM201 4.3 18.4 1.0
C2D B:HEM201 4.3 18.5 1.0
C3D B:HEM201 4.3 17.2 1.0
C3B B:HEM201 4.3 21.1 1.0
ND1 B:HIS89 4.4 25.0 1.0
C2B B:HEM201 4.4 17.8 1.0
CG B:HIS89 4.4 27.1 1.0
CE B:MET86 4.6 24.3 1.0
C6 B:4CH203 4.6 19.2 0.9
CG1 B:VAL59 4.9 16.8 1.0
C4 B:4CH203 4.9 25.0 0.9

Reference:

L.M.Carey, R.A.Ghiladi. Mechanistic and Structural Studies of 2,4-Dihalophenol: Bridging the Functional Gap Between Reactivity and Inhibition in Dehaloperoxidase To Be Published.
Page generated: Thu Aug 8 08:06:55 2024

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