Atomistry » Iron » PDB 7lw7-7mh8 » 7m2u
Atomistry »
  Iron »
    PDB 7lw7-7mh8 »
      7m2u »

Iron in PDB 7m2u: Nucleotide Excision Repair Complex Tfiih RAD4-33

Enzymatic activity of Nucleotide Excision Repair Complex Tfiih RAD4-33

All present enzymatic activity of Nucleotide Excision Repair Complex Tfiih RAD4-33:
3.6.4.12;

Other elements in 7m2u:

The structure of Nucleotide Excision Repair Complex Tfiih RAD4-33 also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Zinc (Zn) 5 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Nucleotide Excision Repair Complex Tfiih RAD4-33 (pdb code 7m2u). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Nucleotide Excision Repair Complex Tfiih RAD4-33, PDB code: 7m2u:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7m2u

Go back to Iron Binding Sites List in 7m2u
Iron binding site 1 out of 4 in the Nucleotide Excision Repair Complex Tfiih RAD4-33


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Nucleotide Excision Repair Complex Tfiih RAD4-33 within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:0.0
occ:1.00
 FE1 0:SF4801 0.0 0.0 1.0
SG 0:CYS115 2.2 117.6 1.0
S3 0:SF4801 2.3 0.0 1.0
S2 0:SF4801 2.3 0.0 1.0
S4 0:SF4801 2.3 0.0 1.0
CB 0:CYS115 2.6 117.6 1.0
CA 0:CYS115 2.7 117.6 1.0
FE2 0:SF4801 2.7 0.0 1.0
FE4 0:SF4801 2.7 0.0 1.0
FE3 0:SF4801 2.7 0.0 1.0
N 0:LEU116 3.5 100.9 1.0
C 0:CYS115 3.5 117.6 1.0
N 0:CYS115 3.8 117.6 1.0
S1 0:SF4801 3.9 0.0 1.0
N 0:HIS117 4.4 89.3 1.0
C 0:LEU114 4.6 146.6 1.0
O 0:LEU114 4.6 146.6 1.0
O 0:CYS115 4.6 117.6 1.0
CB 0:CYS191 4.7 115.3 1.0
SG 0:CYS133 4.8 46.6 1.0
CA 0:LEU116 4.8 100.9 1.0
SG 0:CYS156 4.8 90.8 1.0
CB 0:TYR193 4.9 84.4 1.0
CB 0:HIS117 5.0 89.3 1.0

Iron binding site 2 out of 4 in 7m2u

Go back to Iron Binding Sites List in 7m2u
Iron binding site 2 out of 4 in the Nucleotide Excision Repair Complex Tfiih RAD4-33


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Nucleotide Excision Repair Complex Tfiih RAD4-33 within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:0.0
occ:1.00
 FE2 0:SF4801 0.0 0.0 1.0
SG 0:CYS156 2.2 90.8 1.0
S4 0:SF4801 2.3 0.0 1.0
S3 0:SF4801 2.3 0.0 1.0
S1 0:SF4801 2.3 0.0 1.0
SG 0:CYS115 2.4 117.6 1.0
FE1 0:SF4801 2.7 0.0 1.0
FE3 0:SF4801 2.7 0.0 1.0
FE4 0:SF4801 2.7 0.0 1.0
CB 0:HIS117 3.1 89.3 1.0
CB 0:CYS156 3.5 90.8 1.0
S2 0:SF4801 3.9 0.0 1.0
N 0:HIS117 4.0 89.3 1.0
CG 0:HIS117 4.1 89.3 1.0
CB 0:CYS115 4.1 117.6 1.0
CA 0:HIS117 4.1 89.3 1.0
CG1 0:VAL120 4.5 54.5 1.0
CB 0:VAL120 4.5 54.5 1.0
CD2 0:HIS117 4.5 89.3 1.0
SG 0:CYS133 4.6 46.6 1.0
CG2 0:VAL120 4.6 54.5 1.0
CA 0:CYS115 4.7 117.6 1.0
CD2 0:TYR158 4.7 101.9 1.0
N 0:LEU116 4.7 100.9 1.0
CB 0:CYS133 4.8 46.6 1.0
CA 0:CYS156 4.8 90.8 1.0
C 0:CYS115 5.0 117.6 1.0

Iron binding site 3 out of 4 in 7m2u

Go back to Iron Binding Sites List in 7m2u
Iron binding site 3 out of 4 in the Nucleotide Excision Repair Complex Tfiih RAD4-33


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Nucleotide Excision Repair Complex Tfiih RAD4-33 within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:0.0
occ:1.00
 FE3 0:SF4801 0.0 0.0 1.0
SG 0:CYS133 2.2 46.6 1.0
S1 0:SF4801 2.3 0.0 1.0
S4 0:SF4801 2.3 0.0 1.0
S2 0:SF4801 2.3 0.0 1.0
FE4 0:SF4801 2.7 0.0 1.0
FE2 0:SF4801 2.7 0.0 1.0
FE1 0:SF4801 2.7 0.0 1.0
CB 0:CYS133 3.2 46.6 1.0
CE2 0:PHE194 3.6 83.2 1.0
SG 0:CYS115 3.6 117.6 1.0
S3 0:SF4801 3.9 0.0 1.0
SG 0:CYS156 3.9 90.8 1.0
CA 0:CYS133 4.2 46.6 1.0
CD2 0:PHE194 4.4 83.2 1.0
CZ 0:PHE194 4.4 83.2 1.0
CB 0:CYS115 4.6 117.6 1.0
CB 0:CYS156 4.9 90.8 1.0
CD 0:ARG111 4.9 123.3 1.0
NE 0:ARG111 4.9 123.3 1.0
O 0:CYS133 4.9 46.6 1.0
C 0:CYS133 5.0 46.6 1.0

Iron binding site 4 out of 4 in 7m2u

Go back to Iron Binding Sites List in 7m2u
Iron binding site 4 out of 4 in the Nucleotide Excision Repair Complex Tfiih RAD4-33


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Nucleotide Excision Repair Complex Tfiih RAD4-33 within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:0.0
occ:1.00
 FE4 0:SF4801 0.0 0.0 1.0
S2 0:SF4801 2.3 0.0 1.0
S1 0:SF4801 2.3 0.0 1.0
S3 0:SF4801 2.3 0.0 1.0
FE3 0:SF4801 2.7 0.0 1.0
FE1 0:SF4801 2.7 0.0 1.0
FE2 0:SF4801 2.7 0.0 1.0
CB 0:CYS191 3.0 115.3 1.0
SG 0:CYS156 3.6 90.8 1.0
CB 0:CYS156 3.7 90.8 1.0
S4 0:SF4801 3.9 0.0 1.0
CB 0:TYR158 3.9 101.9 1.0
CA 0:CYS191 3.9 115.3 1.0
CD2 0:TYR158 4.1 101.9 1.0
SG 0:CYS115 4.2 117.6 1.0
SG 0:CYS191 4.3 115.3 1.0
CG 0:TYR158 4.4 101.9 1.0
CE2 0:PHE194 4.4 83.2 1.0
CD2 0:PHE194 4.5 83.2 1.0
N 0:HIS159 4.6 57.3 1.0
SG 0:CYS133 4.8 46.6 1.0
C 0:CYS191 4.9 115.3 1.0
N 0:CYS191 5.0 115.3 1.0

Reference:

T.Van Eeuwen, Y.Shim, H.J.Kim, T.Zhao, S.Basu, B.A.Garcia, C.D.Kaplan, J.H.Min, K.Murakami. Cryo-Em Structure of Tfiih/RAD4-RAD23-RAD33 in Damaged Dna Opening in Nucleotide Excision Repair. Nat Commun V. 12 3338 2021.
ISSN: ESSN 2041-1723
PubMed: 34099686
DOI: 10.1038/S41467-021-23684-X
Page generated: Thu Aug 8 08:10:51 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy