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Iron in PDB 7m76: Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I

Enzymatic activity of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I

All present enzymatic activity of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I:
1.97.1.12;

Protein crystallography data

The structure of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I, PDB code: 7m76 was solved by S.M.Keable, P.S.Simon, A.Kolsch, J.Kern, V.K.Yachandra, A.Zouni, J.Yano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.23 / 3.00
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 284.269, 284.269, 165.746, 90, 90, 120
R / Rfree (%) 26.8 / 27.8

Other elements in 7m76:

The structure of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Magnesium (Mg) 96 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I (pdb code 7m76). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I, PDB code: 7m76:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 7m76

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Iron binding site 1 out of 12 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe3001

b:118.3
occ:1.00
FE1 B:SF43001 0.0 118.3 1.0
SG B:CYS574 2.3 43.0 1.0
S3 B:SF43001 2.3 35.9 1.0
S2 B:SF43001 2.3 66.2 1.0
S4 B:SF43001 2.3 29.9 1.0
FE4 B:SF43001 2.7 88.8 1.0
FE3 B:SF43001 2.7 46.2 1.0
FE2 B:SF43001 2.8 63.7 1.0
HB3 B:CYS574 3.3 67.3 1.0
CB B:CYS574 3.4 50.2 1.0
HD13 A:ILE724 3.5 82.2 1.0
HG A:CYS578 3.6 42.3 1.0
HA B:CYS574 3.8 66.0 1.0
HZ3 B:TRP673 3.8 30.8 1.0
S1 B:SF43001 3.9 37.4 1.0
CA B:CYS574 4.1 49.1 1.0
HB3 B:CYS565 4.1 34.3 1.0
HG21 A:ILE724 4.1 89.7 1.0
HB2 B:CYS574 4.2 67.3 1.0
H B:CYS574 4.3 73.2 1.0
HG23 A:ILE724 4.4 89.7 1.0
CD1 A:ILE724 4.4 62.6 1.0
N B:CYS574 4.4 55.1 1.0
HB2 B:CYS565 4.4 34.3 1.0
CZ3 B:TRP673 4.5 19.8 1.0
HE3 B:TRP673 4.5 40.0 1.0
HH21 A:ARG728 4.6 61.9 1.0
CB B:CYS565 4.6 22.7 1.0
HD11 A:ILE724 4.6 82.2 1.0
SG A:CYS578 4.7 29.4 1.0
H B:THR573 4.7 60.2 1.0
CG2 A:ILE724 4.7 68.9 1.0
HH22 A:ARG728 4.7 61.9 1.0
HD12 A:ILE724 4.8 82.2 1.0
HB3 A:CYS587 4.8 47.8 1.0
SG A:CYS587 4.8 26.8 1.0
CE3 B:TRP673 4.8 27.4 1.0
SG B:CYS565 4.9 45.4 1.0
HH21 B:ARG712 5.0 38.7 1.0
NH2 A:ARG728 5.0 45.7 1.0

Iron binding site 2 out of 12 in 7m76

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Iron binding site 2 out of 12 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe3001

b:63.7
occ:1.00
FE2 B:SF43001 0.0 63.7 1.0
SG A:CYS587 2.3 26.8 1.0
S4 B:SF43001 2.3 29.9 1.0
S1 B:SF43001 2.3 37.4 1.0
S3 B:SF43001 2.3 35.9 1.0
FE4 B:SF43001 2.7 88.8 1.0
FE3 B:SF43001 2.7 46.2 1.0
FE1 B:SF43001 2.8 118.3 1.0
HB3 A:CYS587 3.0 47.8 1.0
CB A:CYS587 3.1 34.0 1.0
HG A:CYS578 3.2 42.3 1.0
HA A:CYS587 3.5 41.9 1.0
HD13 B:ILE708 3.6 51.1 1.0
CA A:CYS587 3.8 29.1 1.0
HE3 B:TRP673 3.9 40.0 1.0
S2 B:SF43001 3.9 66.2 1.0
H A:CYS587 3.9 52.9 1.0
HB3 A:CYS578 3.9 61.4 1.0
HB2 A:CYS587 4.0 47.8 1.0
HB2 A:CYS578 4.1 61.4 1.0
N A:CYS587 4.1 38.2 1.0
SG A:CYS578 4.2 29.4 1.0
HG21 B:ILE708 4.3 53.0 1.0
CB A:CYS578 4.3 45.3 1.0
HH22 A:ARG728 4.4 61.9 1.0
CD1 B:ILE708 4.5 36.8 1.0
CE3 B:TRP673 4.5 27.4 1.0
HD11 B:ILE708 4.6 51.1 1.0
HZ3 B:TRP673 4.6 30.8 1.0
SG B:CYS565 4.7 45.4 1.0
HH21 A:ARG728 4.7 61.9 1.0
H A:THR586 4.8 57.6 1.0
HG23 B:ILE708 4.9 53.0 1.0
HB3 B:CYS565 4.9 34.3 1.0
NH2 A:ARG728 4.9 45.7 1.0
SG B:CYS574 4.9 43.0 1.0
HB3 B:TRP673 4.9 42.4 1.0
CZ3 B:TRP673 4.9 19.8 1.0
HD12 B:ILE708 5.0 51.1 1.0

Iron binding site 3 out of 12 in 7m76

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Iron binding site 3 out of 12 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe3001

b:46.2
occ:1.00
FE3 B:SF43001 0.0 46.2 1.0
HG A:CYS578 1.1 42.3 1.0
S1 B:SF43001 2.3 37.4 1.0
SG A:CYS578 2.3 29.4 1.0
S2 B:SF43001 2.3 66.2 1.0
S4 B:SF43001 2.3 29.9 1.0
FE2 B:SF43001 2.7 63.7 1.0
FE4 B:SF43001 2.7 88.8 1.0
FE1 B:SF43001 2.7 118.3 1.0
CB A:CYS578 3.5 45.3 1.0
HB3 A:CYS578 3.6 61.4 1.0
HB2 A:CYS578 3.7 61.4 1.0
HD3 B:PRO568 3.8 40.9 1.0
H A:GLY580 3.9 38.2 1.0
S3 B:SF43001 3.9 35.9 1.0
HA2 B:GLY567 3.9 38.0 1.0
HA2 A:GLY580 4.0 29.9 1.0
HD13 A:ILE724 4.2 82.2 1.0
HB3 B:PRO568 4.3 61.4 1.0
N B:PRO568 4.4 23.0 1.0
SG B:CYS565 4.4 45.4 1.0
HA B:PRO568 4.4 41.2 1.0
CD B:PRO568 4.5 28.2 1.0
N A:GLY580 4.5 26.0 1.0
HB2 A:PRO577 4.6 59.6 1.0
C B:GLY567 4.6 32.5 1.0
CA A:GLY580 4.6 19.1 1.0
HA A:CYS587 4.6 41.9 1.0
CA B:GLY567 4.6 25.8 1.0
HB2 B:CYS565 4.7 34.3 1.0
H B:GLY567 4.7 34.3 1.0
HD3 A:PRO581 4.7 19.6 1.0
SG B:CYS574 4.7 43.0 1.0
HD12 A:ILE724 4.7 82.2 1.0
SG A:CYS587 4.8 26.8 1.0
CD1 A:ILE724 4.8 62.6 1.0
CA B:PRO568 4.8 28.5 1.0
CA A:CYS578 4.9 36.5 1.0
HB3 B:CYS565 4.9 34.3 1.0
C A:GLY580 4.9 20.2 1.0
CB B:PRO568 4.9 45.3 1.0
HD11 A:ILE724 5.0 82.2 1.0
CB B:CYS565 5.0 22.7 1.0

Iron binding site 4 out of 12 in 7m76

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Iron binding site 4 out of 12 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe3001

b:88.8
occ:1.00
FE4 B:SF43001 0.0 88.8 1.0
SG B:CYS565 2.3 45.4 1.0
S2 B:SF43001 2.3 66.2 1.0
S1 B:SF43001 2.3 37.4 1.0
S3 B:SF43001 2.3 35.9 1.0
HB3 B:CYS565 2.4 34.3 1.0
CB B:CYS565 2.7 22.7 1.0
FE2 B:SF43001 2.7 63.7 1.0
FE1 B:SF43001 2.7 118.3 1.0
FE3 B:SF43001 2.7 46.2 1.0
HB2 B:CYS565 2.8 34.3 1.0
HD13 B:ILE708 3.7 51.1 1.0
HG A:CYS578 3.8 42.3 1.0
S4 B:SF43001 3.9 29.9 1.0
H B:GLY567 4.0 34.3 1.0
CA B:CYS565 4.2 41.9 1.0
HA B:CYS574 4.2 66.0 1.0
HD3 A:PRO581 4.2 19.6 1.0
HA2 B:GLY567 4.4 38.0 1.0
HD12 B:ILE708 4.4 51.1 1.0
HG21 B:ILE708 4.4 53.0 1.0
CD1 B:ILE708 4.5 36.8 1.0
HB2 B:PRO564 4.5 35.2 1.0
HH22 B:ARG712 4.5 38.7 1.0
SG A:CYS587 4.6 26.8 1.0
SG B:CYS574 4.6 43.0 1.0
HB3 A:PRO581 4.6 40.4 1.0
HA B:CYS565 4.6 57.3 1.0
N B:CYS565 4.6 36.8 1.0
HD11 B:ILE708 4.7 51.1 1.0
N B:GLY567 4.8 22.7 1.0
HB3 B:CYS574 4.8 67.3 1.0
HG23 B:THR573 4.8 54.7 1.0
H B:ASP566 4.8 59.0 1.0
O B:PRO564 4.8 51.6 1.0
HH21 B:ARG712 4.8 38.7 1.0
C B:PRO564 4.9 39.7 1.0
HA2 A:GLY580 4.9 29.9 1.0
SG A:CYS578 4.9 29.4 1.0
CA B:CYS574 4.9 49.1 1.0

Iron binding site 5 out of 12 in 7m76

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Iron binding site 5 out of 12 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:54.8
occ:1.00
FE1 C:SF4101 0.0 54.8 1.0
S3 C:SF4101 2.3 53.7 1.0
SG C:CYS50 2.3 85.4 1.0
S4 C:SF4101 2.3 51.6 1.0
S2 C:SF4101 2.3 23.7 1.0
FE4 C:SF4101 2.7 48.1 1.0
FE2 C:SF4101 2.7 41.0 1.0
FE3 C:SF4101 2.7 71.8 1.0
H C:CYS50 3.0 31.4 1.0
H C:LYS51 3.0 45.5 1.0
N C:CYS50 3.4 20.4 1.0
H C:GLY49 3.6 32.9 1.0
N C:LYS51 3.6 32.1 1.0
H C:ARG52 3.6 37.5 1.0
CB C:CYS50 3.6 36.9 1.0
HD2 C:PRO21 3.7 72.8 1.0
HD3 C:PRO21 3.8 72.8 1.0
S1 C:SF4101 3.9 58.6 1.0
CA C:CYS50 3.9 30.1 1.0
HB3 C:CYS50 4.0 51.2 1.0
H C:CYS53 4.0 57.7 1.0
HG22 C:VAL48 4.1 21.8 1.0
C C:CYS50 4.1 27.6 1.0
CD C:PRO21 4.2 54.8 1.0
C C:GLY49 4.3 12.4 1.0
HB2 C:ARG52 4.3 60.0 1.0
HA C:CYS20 4.3 70.2 1.0
N C:ARG52 4.3 25.4 1.0
N C:GLY49 4.4 21.6 1.0
HB2 C:CYS50 4.4 51.2 1.0
HA C:LYS51 4.4 36.1 1.0
SG C:CYS53 4.4 80.4 1.0
HA2 C:GLY49 4.5 22.3 1.0
HG3 C:ARG52 4.5 47.0 1.0
H C:VAL48 4.5 58.2 1.0
CA C:LYS51 4.6 24.2 1.0
CA C:GLY49 4.6 12.7 1.0
HD2 C:ARG52 4.6 50.4 1.0
HB2 C:CYS20 4.7 64.5 1.0
SG C:CYS20 4.7 29.5 1.0
HG21 C:VAL24 4.7 68.4 1.0
HG23 C:VAL48 4.7 21.8 1.0
SG C:CYS47 4.8 26.4 1.0
CG2 C:VAL48 4.8 12.3 1.0
N C:CYS53 4.9 42.3 1.0
HA C:CYS50 4.9 43.2 1.0
HB3 C:CYS53 4.9 44.2 1.0
C C:LYS51 4.9 37.5 1.0
CB C:ARG52 5.0 44.2 1.0

Iron binding site 6 out of 12 in 7m76

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Iron binding site 6 out of 12 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:41.0
occ:1.00
FE2 C:SF4101 0.0 41.0 1.0
S4 C:SF4101 2.3 51.6 1.0
SG C:CYS20 2.3 29.5 1.0
S3 C:SF4101 2.3 53.7 1.0
S1 C:SF4101 2.3 58.6 1.0
HB2 C:CYS20 2.7 64.5 1.0
FE4 C:SF4101 2.7 48.1 1.0
FE1 C:SF4101 2.7 54.8 1.0
FE3 C:SF4101 2.7 71.8 1.0
HG21 C:VAL24 2.9 68.4 1.0
CB C:CYS20 3.0 47.9 1.0
HG23 C:VAL24 3.1 68.4 1.0
HB C:VAL24 3.2 67.7 1.0
HD2 C:PRO21 3.3 72.8 1.0
CG2 C:VAL24 3.4 51.2 1.0
HA C:CYS20 3.5 70.2 1.0
CA C:CYS20 3.8 52.6 1.0
HB3 C:CYS20 3.8 64.5 1.0
CB C:VAL24 3.8 50.6 1.0
S2 C:SF4101 3.9 23.7 1.0
HD3 C:PRO21 3.9 72.8 1.0
CD C:PRO21 4.0 54.8 1.0
H C:VAL24 4.1 56.4 1.0
H C:THR22 4.2 59.7 1.0
OG1 C:THR22 4.3 36.6 1.0
HG22 C:VAL24 4.3 68.4 1.0
HB3 C:CYS53 4.3 44.2 1.0
HG11 C:VAL24 4.4 49.0 1.0
HG1 C:THR22 4.4 50.9 1.0
SG C:CYS50 4.5 85.4 1.0
HG C:LEU25 4.5 59.8 1.0
HD11 C:LEU25 4.5 47.3 1.0
C C:CYS20 4.5 52.3 1.0
N C:PRO21 4.5 52.1 1.0
HA C:CYS47 4.6 63.9 1.0
HD12 C:LEU25 4.7 47.3 1.0
CG1 C:VAL24 4.7 35.0 1.0
N C:VAL24 4.8 41.1 1.0
SG C:CYS53 4.8 80.4 1.0
SG C:CYS47 4.9 26.4 1.0
H C:CYS53 5.0 57.7 1.0
CA C:VAL24 5.0 37.0 1.0
N C:CYS20 5.0 61.0 1.0
N C:THR22 5.0 43.9 1.0

Iron binding site 7 out of 12 in 7m76

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Iron binding site 7 out of 12 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:71.8
occ:1.00
FE3 C:SF4101 0.0 71.8 1.0
SG C:CYS53 2.3 80.4 1.0
S1 C:SF4101 2.3 58.6 1.0
S2 C:SF4101 2.3 23.7 1.0
S4 C:SF4101 2.3 51.6 1.0
FE4 C:SF4101 2.7 48.1 1.0
FE2 C:SF4101 2.7 41.0 1.0
FE1 C:SF4101 2.7 54.8 1.0
HB3 C:CYS53 3.0 44.2 1.0
CB C:CYS53 3.3 31.0 1.0
H C:CYS53 3.4 57.7 1.0
HG21 C:VAL66 3.7 38.0 1.0
HB2 C:CYS53 3.9 44.2 1.0
S3 C:SF4101 3.9 53.7 1.0
HD11 C:LEU25 3.9 47.3 1.0
HG22 C:VAL66 4.1 38.0 1.0
H C:LYS51 4.1 45.5 1.0
HB2 C:CYS20 4.1 64.5 1.0
N C:CYS53 4.1 42.3 1.0
HA C:LYS51 4.3 36.1 1.0
CA C:CYS53 4.3 34.9 1.0
CG2 C:VAL66 4.3 25.9 1.0
HG21 C:VAL4 4.6 48.1 1.0
HG11 C:VAL66 4.6 40.7 1.0
SG C:CYS47 4.6 26.4 1.0
HG21 C:VAL24 4.6 68.4 1.0
HB C:VAL24 4.7 67.7 1.0
HG11 C:VAL4 4.7 46.0 1.0
N C:LYS51 4.7 32.1 1.0
CD1 C:LEU25 4.8 33.6 1.0
H C:ARG52 4.8 37.5 1.0
SG C:CYS50 4.8 85.4 1.0
HD12 C:LEU25 4.8 47.3 1.0
HD11 C:ILE64 4.8 51.5 1.0
SG C:CYS20 4.9 29.5 1.0
HG22 C:VAL4 4.9 48.1 1.0
CB C:CYS20 4.9 47.9 1.0
HG23 C:VAL66 4.9 38.0 1.0
HA C:CYS53 4.9 48.9 1.0
CA C:LYS51 4.9 24.2 1.0
HD13 C:ILE64 5.0 51.5 1.0
HG13 C:VAL66 5.0 40.7 1.0
HG11 C:VAL24 5.0 49.0 1.0

Iron binding site 8 out of 12 in 7m76

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Iron binding site 8 out of 12 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:48.1
occ:1.00
FE4 C:SF4101 0.0 48.1 1.0
SG C:CYS47 2.3 26.4 1.0
S2 C:SF4101 2.3 23.7 1.0
S1 C:SF4101 2.3 58.6 1.0
S3 C:SF4101 2.3 53.7 1.0
FE3 C:SF4101 2.7 71.8 1.0
FE1 C:SF4101 2.7 54.8 1.0
FE2 C:SF4101 2.7 41.0 1.0
HG21 C:VAL24 2.8 68.4 1.0
HA C:CYS47 3.3 63.9 1.0
H C:GLY49 3.4 32.9 1.0
CB C:CYS47 3.4 47.0 1.0
HB2 C:CYS47 3.5 63.4 1.0
H C:VAL48 3.7 58.2 1.0
HG11 C:VAL24 3.7 49.0 1.0
CG2 C:VAL24 3.8 51.2 1.0
CA C:CYS47 3.8 47.4 1.0
S4 C:SF4101 3.9 51.6 1.0
HA2 C:GLY49 4.0 22.3 1.0
N C:GLY49 4.1 21.6 1.0
HG21 C:VAL4 4.1 48.1 1.0
N C:VAL48 4.1 42.6 1.0
HG23 C:VAL24 4.1 68.4 1.0
HB C:VAL24 4.2 67.7 1.0
HB3 C:CYS47 4.2 63.4 1.0
H C:CYS50 4.3 31.4 1.0
C C:CYS47 4.3 43.9 1.0
HG22 C:VAL24 4.3 68.4 1.0
CB C:VAL24 4.4 50.6 1.0
HG11 C:VAL66 4.4 40.7 1.0
CG1 C:VAL24 4.5 35.0 1.0
CA C:GLY49 4.5 12.7 1.0
HG22 C:VAL48 4.6 21.8 1.0
H C:LYS51 4.6 45.5 1.0
HG22 C:VAL4 4.7 48.1 1.0
HG1 C:THR22 4.7 50.9 1.0
HG13 C:VAL66 4.7 40.7 1.0
SG C:CYS20 4.8 29.5 1.0
CG2 C:VAL4 4.8 34.2 1.0
N C:CYS50 4.8 20.4 1.0
SG C:CYS53 4.9 80.4 1.0
SG C:CYS50 4.9 85.4 1.0
OG1 C:THR22 5.0 36.6 1.0

Iron binding site 9 out of 12 in 7m76

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Iron binding site 9 out of 12 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:64.8
occ:1.00
FE1 C:SF4102 0.0 64.8 1.0
S3 C:SF4102 2.3 38.8 1.0
S2 C:SF4102 2.3 40.5 1.0
S4 C:SF4102 2.3 40.4 1.0
SG C:CYS57 2.3 50.8 1.0
FE3 C:SF4102 2.7 52.9 1.0
FE2 C:SF4102 2.7 45.6 1.0
FE4 C:SF4102 2.7 54.9 1.0
HD2 C:PRO58 3.0 64.3 1.0
HA C:CYS57 3.2 44.3 1.0
HB2 C:CYS57 3.2 58.6 1.0
CB C:CYS57 3.3 43.0 1.0
HB2 C:SER63 3.5 77.4 1.0
HD3 C:PRO58 3.6 64.3 1.0
CA C:CYS57 3.7 31.1 1.0
CD C:PRO58 3.7 47.7 1.0
HG23 C:THR59 3.8 92.3 1.0
SG C:CYS13 3.9 60.6 1.0
S1 C:SF4102 3.9 62.3 1.0
H C:THR59 4.1 65.0 1.0
HB3 C:CYS57 4.1 58.6 1.0
H C:SER63 4.1 74.9 1.0
N C:PRO58 4.4 54.2 1.0
HG22 C:ILE64 4.4 41.4 1.0
HG1 C:THR59 4.4 98.5 1.0
C C:CYS57 4.5 54.9 1.0
H C:ILE64 4.5 72.4 1.0
CB C:SER63 4.5 58.6 1.0
OG1 C:THR59 4.5 76.3 1.0
HG21 C:THR59 4.5 92.3 1.0
CG2 C:THR59 4.6 71.1 1.0
HB C:ILE64 4.7 58.6 1.0
HG21 C:ILE64 4.7 41.4 1.0
HB3 C:SER63 4.8 77.4 1.0
HB3 C:CYS13 4.8 86.3 1.0
H C:ILE11 4.9 58.7 1.0
N C:SER63 4.9 56.6 1.0
SG C:CYS16 4.9 64.5 1.0
N C:CYS57 4.9 37.5 1.0
HA C:CYS10 4.9 63.7 1.0
N C:ILE64 4.9 54.5 1.0
HB3 C:CYS16 5.0 56.0 1.0
N C:THR59 5.0 48.4 1.0
CG2 C:ILE64 5.0 28.6 1.0
H C:CYS13 5.0 89.2 1.0
SG C:CYS10 5.0 33.6 1.0

Iron binding site 10 out of 12 in 7m76

Go back to Iron Binding Sites List in 7m76
Iron binding site 10 out of 12 in the Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:45.6
occ:1.00
FE2 C:SF4102 0.0 45.6 1.0
S1 C:SF4102 2.3 62.3 1.0
S4 C:SF4102 2.3 40.4 1.0
SG C:CYS16 2.3 64.5 1.0
S3 C:SF4102 2.3 38.8 1.0
FE4 C:SF4102 2.7 54.9 1.0
FE3 C:SF4102 2.7 52.9 1.0
FE1 C:SF4102 2.7 64.8 1.0
HB3 C:CYS16 3.3 56.0 1.0
H C:CYS16 3.3 66.8 1.0
CB C:CYS16 3.4 40.8 1.0
HB2 C:ALA39 3.7 85.3 1.0
HB C:ILE64 3.8 58.6 1.0
S2 C:SF4102 3.9 40.5 1.0
N C:CYS16 4.0 49.8 1.0
HB2 C:CYS16 4.1 56.0 1.0
HG21 C:ILE64 4.1 41.4 1.0
H C:THR14 4.3 96.2 1.0
HB2 C:CYS57 4.3 58.6 1.0
H C:GLN15 4.3 99.9 1.0
HB3 C:ALA39 4.4 85.3 1.0
CA C:CYS16 4.4 37.3 1.0
SG C:CYS13 4.4 60.6 1.0
CB C:ALA39 4.4 65.3 1.0
HD12 C:ILE64 4.5 51.5 1.0
HA C:THR14 4.6 99.7 1.0
SG C:CYS10 4.6 33.6 1.0
SG C:CYS57 4.6 50.8 1.0
CB C:ILE64 4.6 43.0 1.0
HG22 C:ILE64 4.7 41.4 1.0
N C:GLN15 4.7 77.4 1.0
CG2 C:ILE64 4.7 28.6 1.0
HB1 C:ALA39 4.7 85.3 1.0
HD13 C:ILE64 4.7 51.5 1.0
N C:THR14 4.8 74.4 1.0
HA C:CYS57 4.8 44.3 1.0
HA C:CYS16 4.9 51.8 1.0
CB C:CYS57 4.9 43.0 1.0

Reference:

S.M.Keable, A.Kolsch, P.S.Simon, M.Dasgupta, R.Chatterjee, S.K.Subramanian, R.Hussein, M.Ibrahim, I.S.Kim, I.Bogacz, H.Makita, C.C.Pham, F.D.Fuller, S.Gul, D.Paley, L.Lassalle, K.D.Sutherlin, A.Bhowmick, N.W.Moriarty, I.D.Young, J.P.Blaschke, C.De Lichtenberg, P.Chernev, M.H.Cheah, S.Park, G.Park, J.Kim, S.J.Lee, J.Park, K.Tono, S.Owada, M.S.Hunter, A.Batyuk, R.Oggenfuss, M.Sander, S.Zerdane, D.Ozerov, K.Nass, H.Lemke, R.Mankowsky, A.S.Brewster, J.Messinger, N.K.Sauter, V.K.Yachandra, J.Yano, A.Zouni, J.Kern. Room Temperature Xfel Crystallography Reveals Asymmetry in the Vicinity of the Two Phylloquinones in Photosystem I. Sci Rep V. 11 21787 2021.
ISSN: ESSN 2045-2322
PubMed: 34750381
DOI: 10.1038/S41598-021-00236-3
Page generated: Thu Aug 8 08:11:18 2024

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