Iron in PDB 7mi5: Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex

Enzymatic activity of Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex

All present enzymatic activity of Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex:
3.1.12.1;

Other elements in 7mi5:

The structure of Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex also contains other interesting chemical elements:

Manganese (Mn) 6 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex (pdb code 7mi5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex, PDB code: 7mi5:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7mi5

Go back to Iron Binding Sites List in 7mi5
Iron binding site 1 out of 4 in the Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:130.7
occ:1.00
FE1 A:SF4601 0.0 130.7 1.0
SG A:CYS22 1.9 121.4 1.0
S3 A:SF4601 2.3 130.7 1.0
S4 A:SF4601 2.3 130.7 1.0
S2 A:SF4601 2.3 130.7 1.0
FE4 A:SF4601 2.7 130.7 1.0
FE2 A:SF4601 2.7 130.7 1.0
FE3 A:SF4601 2.7 130.7 1.0
CB A:CYS22 2.8 121.4 1.0
CB A:LEU25 2.9 115.7 1.0
CD1 A:LEU25 3.3 115.7 1.0
N A:LEU25 3.5 115.7 1.0
CA A:LEU25 3.6 115.7 1.0
CG A:LEU25 3.7 115.7 1.0
S1 A:SF4601 3.9 130.7 1.0
CA A:CYS22 4.3 121.4 1.0
O A:CYS22 4.4 121.4 1.0
CB A:CYS190 4.4 122.5 1.0
C A:CYS22 4.6 121.4 1.0
C A:ARG24 4.6 110.8 1.0
CD1 A:LEU181 4.7 116.8 1.0
CB A:ARG24 4.7 110.8 1.0
SG A:CYS196 4.8 115.8 1.0
SG A:CYS187 4.8 110.2 1.0
SG A:CYS190 4.8 122.5 1.0
CG A:LEU181 4.9 116.8 1.0

Iron binding site 2 out of 4 in 7mi5

Go back to Iron Binding Sites List in 7mi5
Iron binding site 2 out of 4 in the Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:130.7
occ:1.00
FE2 A:SF4601 0.0 130.7 1.0
SG A:CYS196 2.2 115.8 1.0
S4 A:SF4601 2.3 130.7 1.0
S1 A:SF4601 2.3 130.7 1.0
S3 A:SF4601 2.3 130.7 1.0
FE4 A:SF4601 2.7 130.7 1.0
FE1 A:SF4601 2.7 130.7 1.0
FE3 A:SF4601 2.7 130.7 1.0
CB A:CYS196 3.1 115.8 1.0
SG A:CYS187 3.7 110.2 1.0
SG A:CYS22 3.8 121.4 1.0
S2 A:SF4601 3.9 130.7 1.0
CD A:ARG24 4.1 110.8 1.0
NE A:ARG24 4.2 110.8 1.0
CB A:PRO198 4.5 130.8 1.0
CA A:CYS196 4.5 115.8 1.0
SG A:CYS190 4.6 122.5 1.0
CG A:ARG24 4.6 110.8 1.0
CB A:PRO180 4.6 98.9 1.0
CB A:ARG24 4.7 110.8 1.0
CA A:PRO180 4.8 98.9 1.0
CG A:PRO198 4.9 130.8 1.0
CB A:CYS187 4.9 110.2 1.0
N A:LEU25 4.9 115.7 1.0

Iron binding site 3 out of 4 in 7mi5

Go back to Iron Binding Sites List in 7mi5
Iron binding site 3 out of 4 in the Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:130.7
occ:1.00
FE3 A:SF4601 0.0 130.7 1.0
SG A:CYS190 2.2 122.5 1.0
S1 A:SF4601 2.3 130.7 1.0
S2 A:SF4601 2.3 130.7 1.0
S4 A:SF4601 2.3 130.7 1.0
CB A:CYS190 2.4 122.5 1.0
FE4 A:SF4601 2.7 130.7 1.0
FE2 A:SF4601 2.7 130.7 1.0
FE1 A:SF4601 2.7 130.7 1.0
SG A:CYS187 3.7 110.2 1.0
CA A:CYS187 3.7 110.2 1.0
S3 A:SF4601 3.9 130.7 1.0
CD1 A:LEU25 3.9 115.7 1.0
CB A:CYS187 4.0 110.2 1.0
CA A:CYS190 4.0 122.5 1.0
O A:CYS187 4.1 110.2 1.0
CB A:CYS196 4.2 115.8 1.0
SG A:CYS196 4.4 115.8 1.0
C A:CYS187 4.5 110.2 1.0
N A:VAL193 4.5 113.7 1.0
SG A:CYS22 4.5 121.4 1.0
N A:CYS190 4.6 122.5 1.0
C A:CYS190 4.7 122.5 1.0
N A:CYS187 4.7 110.2 1.0
O A:CYS190 4.8 122.5 1.0
CG A:LEU25 4.9 115.7 1.0
CB A:LEU25 4.9 115.7 1.0
CA A:VAL193 4.9 113.7 1.0
C A:LEU192 4.9 112.8 1.0

Iron binding site 4 out of 4 in 7mi5

Go back to Iron Binding Sites List in 7mi5
Iron binding site 4 out of 4 in the Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Asymmetrical Pam-Non Pam Prespacer Bound CAS4/CAS1/CAS2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:130.7
occ:1.00
FE4 A:SF4601 0.0 130.7 1.0
SG A:CYS187 2.2 110.2 1.0
S2 A:SF4601 2.3 130.7 1.0
S1 A:SF4601 2.3 130.7 1.0
S3 A:SF4601 2.3 130.7 1.0
FE1 A:SF4601 2.7 130.7 1.0
FE2 A:SF4601 2.7 130.7 1.0
FE3 A:SF4601 2.7 130.7 1.0
CD1 A:LEU181 2.9 116.8 1.0
CG A:LEU181 3.3 116.8 1.0
SG A:CYS22 3.3 121.4 1.0
CB A:CYS187 3.4 110.2 1.0
CA A:CYS187 3.6 110.2 1.0
S4 A:SF4601 3.9 130.7 1.0
N A:CYS187 4.0 110.2 1.0
CB A:LEU181 4.0 116.8 1.0
CB A:CYS22 4.2 121.4 1.0
N A:LEU181 4.3 116.8 1.0
CD2 A:LEU181 4.5 116.8 1.0
CB A:CYS190 4.6 122.5 1.0
C A:LYS186 4.8 111.0 1.0
SG A:CYS196 4.8 115.8 1.0
SG A:CYS190 4.8 122.5 1.0
CA A:LEU181 4.9 116.8 1.0

Reference:

C.Hu, C.Almendros, K.H.Nam, A.R.Costa, J.N.A.Vink, A.C.Haagsma, S.R.Bagde, S.J.J.Brouns, A.Ke. Mechanism For CAS4-Assisted Directional Spacer Acquisition in Crispr-Cas. Nature V. 598 515 2021.
ISSN: ESSN 1476-4687
PubMed: 34588691
DOI: 10.1038/S41586-021-03951-Z
Page generated: Thu Nov 25 09:30:39 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy