Iron in PDB 7n88: The Cryoem Structure of Lbpb From N. Gonorrhoeae in Complex with Lactoferrin

The binding sites of Iron atom in the The Cryoem Structure of Lbpb From N. Gonorrhoeae in Complex with Lactoferrin (pdb code 7n88). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The Cryoem Structure of Lbpb From N. Gonorrhoeae in Complex with Lactoferrin, PDB code: 7n88:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the The Cryoem Structure of Lbpb From N. Gonorrhoeae in Complex with Lactoferrin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Cryoem Structure of Lbpb From N. Gonorrhoeae in Complex with Lactoferrin within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe701 b:9.2 occ:1.00 O2 B:BCT703 1.7 6.8 1.0 OH B:TYR436 1.7 9.1 1.0 OD1 B:ASP396 1.9 11.1 1.0 O1 B:BCT703 1.9 6.8 1.0 C B:BCT703 2.1 6.8 1.0 OH B:TYR529 2.2 8.8 1.0 CG B:ASP396 2.3 11.1 1.0 OD2 B:ASP396 2.4 11.1 1.0 CZ B:TYR436 2.5 9.1 1.0 NE2 B:HIS598 2.6 13.4 1.0 CE2 B:TYR436 3.2 9.1 1.0 CE1 B:TYR436 3.3 9.1 1.0 O3 B:BCT703 3.3 6.8 1.0 CE1 B:HIS598 3.3 13.4 1.0 CZ B:TYR529 3.4 8.8 1.0 CD2 B:HIS598 3.5 13.4 1.0 CB B:ASP396 3.7 11.1 1.0 CE1 B:TYR529 3.9 8.8 1.0 ND1 B:HIS598 4.4 13.4 1.0 CE2 B:TYR529 4.4 8.8 1.0 CD2 B:TYR436 4.4 9.1 1.0 CG B:HIS598 4.4 13.4 1.0 CD1 B:TYR436 4.5 9.1 1.0 CG2 B:THR467 4.6 12.7 1.0 CD B:ARG466 4.6 6.7 1.0 CA B:ASP396 4.7 11.1 1.0 CG B:TYR436 4.9 9.1 1.0 OH B:TYR416 5.0 20.3 1.0

Iron binding site 2 out of 2 in the The Cryoem Structure of Lbpb From N. Gonorrhoeae in Complex with Lactoferrin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Cryoem Structure of Lbpb From N. Gonorrhoeae in Complex with Lactoferrin within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe702 b:29.9 occ:1.00 O3 B:BCT704 1.9 20.3 1.0 OH B:TYR93 2.0 21.0 1.0 OD2 B:ASP61 2.0 19.0 1.0 OH B:TYR193 2.2 36.5 1.0 NE2 B:HIS254 2.4 16.4 1.0 CZ B:TYR93 2.6 21.0 1.0 C B:BCT704 2.7 20.3 1.0 O1 B:BCT704 2.9 20.3 1.0 CG B:ASP61 3.1 19.0 1.0 CE1 B:HIS254 3.2 16.4 1.0 CE2 B:TYR93 3.2 21.0 1.0 CE1 B:TYR93 3.3 21.0 1.0 OD1 B:ASP61 3.5 19.0 1.0 CD2 B:HIS254 3.5 16.4 1.0 CZ B:TYR193 3.5 36.5 1.0 O2 B:BCT704 4.0 20.3 1.0 CD B:ARG211 4.0 30.0 1.0 CE2 B:TYR193 4.3 36.5 1.0 CD2 B:TYR93 4.3 21.0 1.0 ND1 B:HIS254 4.4 16.4 1.0 CD1 B:TYR93 4.4 21.0 1.0 CG B:ARG211 4.4 30.0 1.0 CB B:ASP61 4.4 19.0 1.0 CE1 B:TYR193 4.5 36.5 1.0 CG B:HIS254 4.5 16.4 1.0 CG B:TYR93 4.8 21.0 1.0 CG2 B:THR123 4.9 18.3 1.0 NH2 B:ARG122 5.0 21.7 1.0

R.Yadav, S.Govindan, C.Daczkowski, A.Mesecar, S.Chakravarthy, N.Noinaj. Structural Insight Into the Dual Function of Lbpb in Mediating Neisserial Pathogenesis. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34751649
DOI: 10.7554/ELIFE.71683