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Iron in PDB 7n8o: High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

Enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

All present enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803:
1.10.3.9;

Other elements in 7n8o:

The structure of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 also contains other interesting chemical elements:

Manganese (Mn) 8 atoms
Calcium (Ca) 8 atoms
Magnesium (Mg) 70 atoms
Chlorine (Cl) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 (pdb code 7n8o). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803, PDB code: 7n8o:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 7n8o

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Iron binding site 1 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:5.5
occ:1.00
 NE2 A:HIS215 2.3 5.5 1.0
NE2 D:HIS268 2.3 5.5 1.0
NE2 D:HIS214 2.3 5.5 1.0
O1 A:BCT417 2.4 2.7 1.0
NE2 A:HIS272 2.4 4.7 1.0
O3 A:BCT417 2.4 2.7 1.0
C A:BCT417 2.8 2.7 1.0
CD2 A:HIS215 3.2 5.5 1.0
CD2 D:HIS268 3.2 5.5 1.0
CD2 D:HIS214 3.3 5.5 1.0
CE1 A:HIS272 3.3 4.7 1.0
CE1 A:HIS215 3.3 5.5 1.0
CE1 D:HIS268 3.3 5.5 1.0
CE1 D:HIS214 3.3 5.5 1.0
CD2 A:HIS272 3.4 4.7 1.0
O2 A:BCT417 4.0 2.7 1.0
CG A:HIS215 4.4 5.5 1.0
ND1 A:HIS215 4.4 5.5 1.0
CG D:HIS268 4.4 5.5 1.0
ND1 D:HIS268 4.4 5.5 1.0
ND1 A:HIS272 4.4 4.7 1.0
CG D:HIS214 4.4 5.5 1.0
ND1 D:HIS214 4.4 5.5 1.0
CG A:HIS272 4.5 4.7 1.0
OH D:TYR244 4.6 2.7 1.0
CG2 A:VAL219 4.7 0.9 1.0
OH A:TYR246 4.8 3.9 1.0
CG2 D:VAL218 4.9 5.5 1.0

Iron binding site 2 out of 6 in 7n8o

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Iron binding site 2 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe104

b:8.6
occ:1.00
 FE E:HEM104 0.0 8.6 1.0
ND E:HEM104 2.0 8.6 1.0
NC E:HEM104 2.0 8.6 1.0
NB E:HEM104 2.1 8.6 1.0
NA E:HEM104 2.1 8.6 1.0
NE2 F:HIS23 2.3 9.4 1.0
CE1 E:HIS23 2.4 8.3 1.0
C4D E:HEM104 3.0 8.6 1.0
C1D E:HEM104 3.0 8.6 1.0
C1C E:HEM104 3.0 8.6 1.0
C1A E:HEM104 3.0 8.6 1.0
C4C E:HEM104 3.0 8.6 1.0
C4B E:HEM104 3.0 8.6 1.0
CE1 F:HIS23 3.1 9.4 1.0
C1B E:HEM104 3.1 8.6 1.0
C4A E:HEM104 3.1 8.6 1.0
CD2 F:HIS23 3.1 9.4 1.0
NE2 E:HIS23 3.2 8.3 1.0
CHA E:HEM104 3.4 8.6 1.0
CHD E:HEM104 3.4 8.6 1.0
CHC E:HEM104 3.4 8.6 1.0
ND1 E:HIS23 3.5 8.3 1.0
CHB E:HEM104 3.5 8.6 1.0
ND1 F:HIS23 4.1 9.4 1.0
CG F:HIS23 4.1 9.4 1.0
C3D E:HEM104 4.1 8.6 1.0
C2D E:HEM104 4.2 8.6 1.0
C2A E:HEM104 4.2 8.6 1.0
C2C E:HEM104 4.2 8.6 1.0
C3C E:HEM104 4.3 8.6 1.0
C3A E:HEM104 4.3 8.6 1.0
C3B E:HEM104 4.3 8.6 1.0
C2B E:HEM104 4.3 8.6 1.0
CD2 E:HIS23 4.4 8.3 1.0
CG E:HIS23 4.6 8.3 1.0
NE1 F:TRP19 4.7 8.3 1.0
CE1 E:TYR19 4.8 9.3 1.0

Iron binding site 3 out of 6 in 7n8o

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Iron binding site 3 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Fe201

b:6.3
occ:1.00
 FE V:HEM201 0.0 6.3 1.0
NB V:HEM201 2.0 6.3 1.0
ND V:HEM201 2.0 6.3 1.0
NC V:HEM201 2.0 6.3 1.0
NA V:HEM201 2.1 6.3 1.0
NE2 V:HIS66 2.3 3.5 1.0
NE2 V:HIS117 2.3 4.8 1.0
C4B V:HEM201 3.0 6.3 1.0
C1B V:HEM201 3.0 6.3 1.0
CD2 V:HIS66 3.0 3.5 1.0
C1D V:HEM201 3.0 6.3 1.0
C4D V:HEM201 3.0 6.3 1.0
C1C V:HEM201 3.0 6.3 1.0
C4C V:HEM201 3.0 6.3 1.0
C1A V:HEM201 3.1 6.3 1.0
CD2 V:HIS117 3.1 4.8 1.0
C4A V:HEM201 3.1 6.3 1.0
CE1 V:HIS117 3.4 4.8 1.0
CHC V:HEM201 3.4 6.3 1.0
CE1 V:HIS66 3.4 3.5 1.0
CHA V:HEM201 3.4 6.3 1.0
CHD V:HEM201 3.4 6.3 1.0
CHB V:HEM201 3.4 6.3 1.0
C3B V:HEM201 4.2 6.3 1.0
C2B V:HEM201 4.2 6.3 1.0
C3D V:HEM201 4.2 6.3 1.0
C2D V:HEM201 4.2 6.3 1.0
CG V:HIS66 4.3 3.5 1.0
C3C V:HEM201 4.3 6.3 1.0
C2C V:HEM201 4.3 6.3 1.0
CG V:HIS117 4.3 4.8 1.0
C2A V:HEM201 4.3 6.3 1.0
C3A V:HEM201 4.3 6.3 1.0
ND1 V:HIS117 4.4 4.8 1.0
ND1 V:HIS66 4.4 3.5 1.0
CE1 V:PHE100 5.0 7.2 1.0

Iron binding site 4 out of 6 in 7n8o

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Iron binding site 4 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe402

b:5.5
occ:1.00
 NE2 a:HIS215 2.3 5.5 1.0
NE2 d:HIS268 2.3 5.5 1.0
NE2 d:HIS214 2.3 5.5 1.0
O1 a:BCT417 2.4 2.7 1.0
NE2 a:HIS272 2.4 4.7 1.0
O3 a:BCT417 2.4 2.7 1.0
C a:BCT417 2.8 2.7 1.0
CD2 a:HIS215 3.2 5.5 1.0
CD2 d:HIS268 3.2 5.5 1.0
CD2 d:HIS214 3.3 5.5 1.0
CE1 a:HIS272 3.3 4.7 1.0
CE1 a:HIS215 3.3 5.5 1.0
CE1 d:HIS268 3.3 5.5 1.0
CE1 d:HIS214 3.3 5.5 1.0
CD2 a:HIS272 3.4 4.7 1.0
O2 a:BCT417 4.0 2.7 1.0
CG a:HIS215 4.4 5.5 1.0
ND1 a:HIS215 4.4 5.5 1.0
ND1 d:HIS268 4.4 5.5 1.0
CG d:HIS268 4.4 5.5 1.0
ND1 a:HIS272 4.4 4.7 1.0
CG d:HIS214 4.4 5.5 1.0
ND1 d:HIS214 4.4 5.5 1.0
CG a:HIS272 4.5 4.7 1.0
OH d:TYR244 4.6 2.7 1.0
CG2 a:VAL219 4.7 0.9 1.0
OH a:TYR246 4.8 3.9 1.0
CG2 d:VAL218 4.9 5.5 1.0

Iron binding site 5 out of 6 in 7n8o

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Iron binding site 5 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
e:Fe104

b:8.6
occ:1.00
 FE e:HEM104 0.0 8.6 1.0
ND e:HEM104 2.0 8.6 1.0
NC e:HEM104 2.0 8.6 1.0
NB e:HEM104 2.1 8.6 1.0
NA e:HEM104 2.1 8.6 1.0
NE2 f:HIS23 2.3 9.4 1.0
CE1 e:HIS23 2.4 8.3 1.0
C4D e:HEM104 3.0 8.6 1.0
C1D e:HEM104 3.0 8.6 1.0
C1C e:HEM104 3.0 8.6 1.0
C1A e:HEM104 3.0 8.6 1.0
C4C e:HEM104 3.0 8.6 1.0
C4B e:HEM104 3.0 8.6 1.0
CE1 f:HIS23 3.1 9.4 1.0
C1B e:HEM104 3.1 8.6 1.0
C4A e:HEM104 3.1 8.6 1.0
CD2 f:HIS23 3.1 9.4 1.0
NE2 e:HIS23 3.2 8.3 1.0
CHA e:HEM104 3.4 8.6 1.0
CHD e:HEM104 3.4 8.6 1.0
CHC e:HEM104 3.4 8.6 1.0
ND1 e:HIS23 3.5 8.3 1.0
CHB e:HEM104 3.5 8.6 1.0
ND1 f:HIS23 4.1 9.4 1.0
CG f:HIS23 4.1 9.4 1.0
C3D e:HEM104 4.1 8.6 1.0
C2D e:HEM104 4.2 8.6 1.0
C2A e:HEM104 4.2 8.6 1.0
C2C e:HEM104 4.2 8.6 1.0
C3C e:HEM104 4.3 8.6 1.0
C3A e:HEM104 4.3 8.6 1.0
C3B e:HEM104 4.3 8.6 1.0
C2B e:HEM104 4.3 8.6 1.0
CD2 e:HIS23 4.4 8.3 1.0
CG e:HIS23 4.6 8.3 1.0
NE1 f:TRP19 4.7 8.3 1.0
CE1 e:TYR19 4.8 9.3 1.0

Iron binding site 6 out of 6 in 7n8o

Go back to Iron Binding Sites List in 7n8o
Iron binding site 6 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
v:Fe201

b:6.3
occ:1.00
 FE v:HEM201 0.0 6.3 1.0
NB v:HEM201 2.0 6.3 1.0
ND v:HEM201 2.0 6.3 1.0
NC v:HEM201 2.0 6.3 1.0
NA v:HEM201 2.1 6.3 1.0
NE2 v:HIS66 2.3 3.5 1.0
NE2 v:HIS117 2.3 4.8 1.0
C4B v:HEM201 3.0 6.3 1.0
C1B v:HEM201 3.0 6.3 1.0
CD2 v:HIS66 3.0 3.5 1.0
C4D v:HEM201 3.0 6.3 1.0
C1D v:HEM201 3.0 6.3 1.0
C1C v:HEM201 3.0 6.3 1.0
C4C v:HEM201 3.0 6.3 1.0
C1A v:HEM201 3.1 6.3 1.0
CD2 v:HIS117 3.1 4.8 1.0
C4A v:HEM201 3.1 6.3 1.0
CE1 v:HIS117 3.4 4.8 1.0
CHC v:HEM201 3.4 6.3 1.0
CE1 v:HIS66 3.4 3.5 1.0
CHA v:HEM201 3.4 6.3 1.0
CHD v:HEM201 3.4 6.3 1.0
CHB v:HEM201 3.4 6.3 1.0
C3B v:HEM201 4.2 6.3 1.0
C2B v:HEM201 4.2 6.3 1.0
C3D v:HEM201 4.2 6.3 1.0
C2D v:HEM201 4.2 6.3 1.0
CG v:HIS66 4.3 3.5 1.0
C3C v:HEM201 4.3 6.3 1.0
C2C v:HEM201 4.3 6.3 1.0
CG v:HIS117 4.3 4.8 1.0
C2A v:HEM201 4.3 6.3 1.0
C3A v:HEM201 4.3 6.3 1.0
ND1 v:HIS117 4.4 4.8 1.0
ND1 v:HIS66 4.4 3.5 1.0
CE1 v:PHE100 5.0 7.2 1.0

Reference:

C.J.Gisriel, J.Wang, J.Liu, D.A.Flesher, K.M.Reiss, H.Huang, K.R.Yang, W.H.Armstrong, M.R.Gunner, V.S.Batista, R.J.Debus, G.W.Brudvig. High-Resolution Cryo-Em Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 To Be Published.
Page generated: Thu Aug 8 09:32:28 2024

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