Iron in PDB 7nz5: Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A
Enzymatic activity of Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A
All present enzymatic activity of Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A:
2.3.1.169;
Protein crystallography data
The structure of Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A, PDB code: 7nz5
was solved by
J.Kreibich,
J.H.Jeoung,
H.Dobbek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
46.19 /
1.90
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
69.246,
98.811,
238.875,
90,
90,
90
|
|
R / Rfree (%)
|
19.3 /
22.4
|
Other elements in 7nz5:
The structure of Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A
(pdb code 7nz5). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A, PDB code: 7nz5:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 7nz5
Go back to
Iron Binding Sites List in 7nz5
Iron binding site 1 out
of 8 in the Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe801
b:14.8
occ:1.00
|
FE1
|
A:SF4801
|
0.0
|
14.8
|
1.0
|
|
S2
|
A:SF4801
|
2.3
|
15.0
|
1.0
|
|
S4
|
A:SF4801
|
2.3
|
14.9
|
1.0
|
|
S3
|
A:SF4801
|
2.3
|
14.5
|
1.0
|
|
SG
|
A:CYS509
|
2.4
|
20.2
|
1.0
|
|
HB3
|
A:CYS509
|
2.7
|
15.8
|
1.0
|
|
FE4
|
A:SF4801
|
2.7
|
16.0
|
1.0
|
|
FE2
|
A:SF4801
|
2.7
|
15.7
|
1.0
|
|
FE3
|
A:SF4801
|
2.7
|
15.2
|
1.0
|
|
CB
|
A:CYS509
|
3.0
|
13.1
|
1.0
|
|
HB3
|
A:LEU511
|
3.3
|
17.4
|
1.0
|
|
HB2
|
A:CYS509
|
3.5
|
15.8
|
1.0
|
|
H
|
A:LEU511
|
3.6
|
23.6
|
1.0
|
|
HG13
|
A:ILE534
|
3.6
|
26.7
|
1.0
|
|
S1
|
A:SF4801
|
3.8
|
16.9
|
1.0
|
|
HB2
|
A:CYS521
|
3.9
|
21.9
|
1.0
|
|
HB2
|
A:LEU511
|
4.1
|
17.4
|
1.0
|
|
CB
|
A:LEU511
|
4.1
|
14.4
|
1.0
|
|
H
|
A:CYS512
|
4.2
|
15.8
|
1.0
|
|
CA
|
A:CYS509
|
4.3
|
15.0
|
1.0
|
|
N
|
A:LEU511
|
4.3
|
19.6
|
1.0
|
|
C
|
A:CYS509
|
4.3
|
15.9
|
1.0
|
|
O
|
A:CYS509
|
4.4
|
17.5
|
1.0
|
|
HD23
|
A:LEU511
|
4.4
|
20.9
|
1.0
|
|
CG1
|
A:ILE534
|
4.5
|
22.2
|
1.0
|
|
HB
|
A:ILE534
|
4.6
|
20.4
|
1.0
|
|
CB
|
A:CYS521
|
4.6
|
18.1
|
1.0
|
|
HB3
|
A:CYS521
|
4.6
|
21.9
|
1.0
|
|
HG21
|
A:ILE534
|
4.7
|
17.8
|
1.0
|
|
HA
|
A:CYS509
|
4.7
|
18.2
|
1.0
|
|
HD21
|
A:ASN551
|
4.7
|
20.6
|
1.0
|
|
HG12
|
A:ILE534
|
4.8
|
26.7
|
1.0
|
|
CA
|
A:LEU511
|
4.8
|
12.2
|
1.0
|
|
HB2
|
A:CYS512
|
4.8
|
21.4
|
1.0
|
|
N
|
A:CYS512
|
4.8
|
13.1
|
1.0
|
|
SG
|
A:CYS512
|
4.9
|
18.2
|
1.0
|
|
SG
|
A:CYS521
|
4.9
|
15.6
|
1.0
|
|
N
|
A:LEU510
|
4.9
|
18.1
|
1.0
|
|
HD11
|
A:ILE149
|
4.9
|
32.7
|
1.0
|
|
Iron binding site 2 out
of 8 in 7nz5
Go back to
Iron Binding Sites List in 7nz5
Iron binding site 2 out
of 8 in the Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe801
b:15.7
occ:1.00
|
FE2
|
A:SF4801
|
0.0
|
15.7
|
1.0
|
|
S1
|
A:SF4801
|
2.3
|
16.9
|
1.0
|
|
S4
|
A:SF4801
|
2.3
|
14.9
|
1.0
|
|
S3
|
A:SF4801
|
2.3
|
14.5
|
1.0
|
|
SG
|
A:CYS521
|
2.5
|
15.6
|
1.0
|
|
FE1
|
A:SF4801
|
2.7
|
14.8
|
1.0
|
|
FE4
|
A:SF4801
|
2.7
|
16.0
|
1.0
|
|
FE3
|
A:SF4801
|
2.8
|
15.2
|
1.0
|
|
HB2
|
A:CYS521
|
2.8
|
21.9
|
1.0
|
|
CB
|
A:CYS521
|
3.1
|
18.1
|
1.0
|
|
HE2
|
A:HIS519
|
3.2
|
21.1
|
1.0
|
|
HB3
|
A:CYS521
|
3.4
|
21.9
|
1.0
|
|
HB3
|
A:CYS509
|
3.5
|
15.8
|
1.0
|
|
HG
|
A:LEU530
|
3.5
|
20.0
|
1.0
|
|
S2
|
A:SF4801
|
3.9
|
15.0
|
1.0
|
|
H
|
A:LEU530
|
3.9
|
14.1
|
1.0
|
|
NE2
|
A:HIS519
|
4.1
|
17.5
|
1.0
|
|
HA3
|
A:GLY529
|
4.2
|
18.4
|
1.0
|
|
H
|
A:CYS531
|
4.2
|
12.5
|
1.0
|
|
CB
|
A:CYS509
|
4.4
|
13.1
|
1.0
|
|
CG
|
A:LEU530
|
4.4
|
16.6
|
1.0
|
|
HD23
|
A:LEU530
|
4.4
|
22.7
|
1.0
|
|
HD11
|
A:LEU530
|
4.5
|
22.1
|
1.0
|
|
CA
|
A:CYS521
|
4.5
|
14.7
|
1.0
|
|
HD21
|
A:LEU530
|
4.6
|
22.7
|
1.0
|
|
HA2
|
A:GLY529
|
4.6
|
18.4
|
1.0
|
|
N
|
A:LEU530
|
4.6
|
11.6
|
1.0
|
|
HD2
|
A:HIS519
|
4.6
|
16.3
|
1.0
|
|
HB2
|
A:CYS512
|
4.7
|
21.4
|
1.0
|
|
SG
|
A:CYS509
|
4.7
|
20.2
|
1.0
|
|
HB3
|
A:CYS531
|
4.7
|
20.6
|
1.0
|
|
H
|
A:CYS521
|
4.7
|
17.2
|
1.0
|
|
CD2
|
A:LEU530
|
4.7
|
18.8
|
1.0
|
|
HB2
|
A:CYS509
|
4.8
|
15.8
|
1.0
|
|
O
|
A:CYS509
|
4.8
|
17.5
|
1.0
|
|
CA
|
A:GLY529
|
4.8
|
15.2
|
1.0
|
|
CD2
|
A:HIS519
|
4.8
|
13.5
|
1.0
|
|
HA
|
A:CYS521
|
4.8
|
17.8
|
1.0
|
|
O
|
A:HOH1431
|
4.9
|
21.2
|
1.0
|
|
CD1
|
A:LEU530
|
4.9
|
18.4
|
1.0
|
|
SG
|
A:CYS531
|
4.9
|
17.0
|
1.0
|
|
HD12
|
A:LEU530
|
5.0
|
22.1
|
1.0
|
|
N
|
A:CYS521
|
5.0
|
14.2
|
1.0
|
|
Iron binding site 3 out
of 8 in 7nz5
Go back to
Iron Binding Sites List in 7nz5
Iron binding site 3 out
of 8 in the Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe801
b:15.2
occ:1.00
|
FE3
|
A:SF4801
|
0.0
|
15.2
|
1.0
|
|
S4
|
A:SF4801
|
2.3
|
14.9
|
1.0
|
|
S2
|
A:SF4801
|
2.3
|
15.0
|
1.0
|
|
S1
|
A:SF4801
|
2.3
|
16.9
|
1.0
|
|
SG
|
A:CYS531
|
2.5
|
17.0
|
1.0
|
|
FE1
|
A:SF4801
|
2.7
|
14.8
|
1.0
|
|
FE4
|
A:SF4801
|
2.7
|
16.0
|
1.0
|
|
FE2
|
A:SF4801
|
2.8
|
15.7
|
1.0
|
|
HB3
|
A:CYS531
|
2.8
|
20.6
|
1.0
|
|
CB
|
A:CYS531
|
3.2
|
17.1
|
1.0
|
|
H
|
A:CYS531
|
3.3
|
12.5
|
1.0
|
|
HG13
|
A:ILE534
|
3.7
|
26.7
|
1.0
|
|
HD11
|
A:ILE149
|
3.8
|
32.7
|
1.0
|
|
O
|
A:HOH1654
|
3.8
|
29.1
|
1.0
|
|
HG12
|
A:ILE534
|
3.8
|
26.7
|
1.0
|
|
HB2
|
A:CYS531
|
3.9
|
20.6
|
1.0
|
|
S3
|
A:SF4801
|
3.9
|
14.5
|
1.0
|
|
HB
|
A:ILE534
|
4.0
|
20.4
|
1.0
|
|
HD13
|
A:ILE149
|
4.0
|
32.7
|
1.0
|
|
HA3
|
A:GLY529
|
4.1
|
18.4
|
1.0
|
|
N
|
A:CYS531
|
4.1
|
10.3
|
1.0
|
|
CG1
|
A:ILE534
|
4.1
|
22.2
|
1.0
|
|
CA
|
A:CYS531
|
4.3
|
10.7
|
1.0
|
|
CD1
|
A:ILE149
|
4.4
|
27.2
|
1.0
|
|
HG
|
A:LEU530
|
4.5
|
20.0
|
1.0
|
|
H
|
A:LEU530
|
4.6
|
14.1
|
1.0
|
|
CB
|
A:ILE534
|
4.6
|
16.9
|
1.0
|
|
H
|
A:GLY532
|
4.8
|
18.5
|
1.0
|
|
H
|
A:ALA533
|
4.8
|
26.4
|
1.0
|
|
HB3
|
A:CYS509
|
4.8
|
15.8
|
1.0
|
|
C
|
A:GLY529
|
4.8
|
11.7
|
1.0
|
|
H
|
A:ILE534
|
4.9
|
20.9
|
1.0
|
|
N
|
A:LEU530
|
4.9
|
11.6
|
1.0
|
|
CA
|
A:GLY529
|
4.9
|
15.2
|
1.0
|
|
HD12
|
A:ILE149
|
4.9
|
32.7
|
1.0
|
|
SG
|
A:CYS509
|
4.9
|
20.2
|
1.0
|
|
HA
|
A:CYS531
|
5.0
|
13.0
|
1.0
|
|
SG
|
A:CYS512
|
5.0
|
18.2
|
1.0
|
|
Iron binding site 4 out
of 8 in 7nz5
Go back to
Iron Binding Sites List in 7nz5
Iron binding site 4 out
of 8 in the Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe801
b:16.0
occ:1.00
|
FE4
|
A:SF4801
|
0.0
|
16.0
|
1.0
|
|
S2
|
A:SF4801
|
2.3
|
15.0
|
1.0
|
|
S1
|
A:SF4801
|
2.3
|
16.9
|
1.0
|
|
S3
|
A:SF4801
|
2.3
|
14.5
|
1.0
|
|
SG
|
A:CYS512
|
2.5
|
18.2
|
1.0
|
|
FE1
|
A:SF4801
|
2.7
|
14.8
|
1.0
|
|
FE2
|
A:SF4801
|
2.7
|
15.7
|
1.0
|
|
FE3
|
A:SF4801
|
2.7
|
15.2
|
1.0
|
|
HB2
|
A:CYS512
|
3.0
|
21.4
|
1.0
|
|
CB
|
A:CYS512
|
3.3
|
17.7
|
1.0
|
|
H
|
A:CYS512
|
3.5
|
15.8
|
1.0
|
|
ZN
|
A:ZN802
|
3.8
|
9.2
|
0.6
|
|
HD11
|
A:ILE149
|
3.8
|
32.7
|
1.0
|
|
HB3
|
A:LEU511
|
3.8
|
17.4
|
1.0
|
|
S4
|
A:SF4801
|
3.9
|
14.9
|
1.0
|
|
HD13
|
A:ILE149
|
3.9
|
32.7
|
1.0
|
|
N
|
A:CYS512
|
4.0
|
13.1
|
1.0
|
|
HB3
|
A:CYS512
|
4.1
|
21.4
|
1.0
|
|
HB3
|
A:CYS531
|
4.1
|
20.6
|
1.0
|
|
HD12
|
A:ILE149
|
4.1
|
32.7
|
1.0
|
|
CD1
|
A:ILE149
|
4.1
|
27.2
|
1.0
|
|
SG
|
A:CYS600
|
4.3
|
16.9
|
1.0
|
|
CA
|
A:CYS512
|
4.3
|
19.0
|
1.0
|
|
SG
|
A:CYS598
|
4.3
|
19.7
|
1.0
|
|
HE2
|
A:HIS519
|
4.6
|
21.1
|
1.0
|
|
HA
|
A:CYS512
|
4.6
|
22.9
|
1.0
|
|
HD23
|
A:LEU511
|
4.6
|
20.9
|
1.0
|
|
HD2
|
A:HIS519
|
4.7
|
16.3
|
1.0
|
|
HG21
|
A:VAL152
|
4.7
|
22.9
|
1.0
|
|
O
|
A:HOH1411
|
4.8
|
16.0
|
1.0
|
|
CB
|
A:LEU511
|
4.8
|
14.4
|
1.0
|
|
H
|
A:LEU511
|
4.8
|
23.6
|
1.0
|
|
SG
|
A:CYS509
|
4.9
|
20.2
|
1.0
|
|
HD11
|
A:LEU530
|
4.9
|
22.1
|
1.0
|
|
HB3
|
A:CYS509
|
4.9
|
15.8
|
1.0
|
|
HB2
|
A:CYS521
|
4.9
|
21.9
|
1.0
|
|
C
|
A:LEU511
|
4.9
|
12.3
|
1.0
|
|
CB
|
A:CYS531
|
4.9
|
17.1
|
1.0
|
|
SG
|
A:CYS531
|
5.0
|
17.0
|
1.0
|
|
Iron binding site 5 out
of 8 in 7nz5
Go back to
Iron Binding Sites List in 7nz5
Iron binding site 5 out
of 8 in the Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe801
b:13.2
occ:1.00
|
FE1
|
B:SF4801
|
0.0
|
13.2
|
1.0
|
|
S3
|
B:SF4801
|
2.3
|
12.4
|
1.0
|
|
S4
|
B:SF4801
|
2.3
|
13.4
|
1.0
|
|
S2
|
B:SF4801
|
2.3
|
12.7
|
1.0
|
|
SG
|
B:CYS509
|
2.4
|
18.1
|
1.0
|
|
FE2
|
B:SF4801
|
2.7
|
14.6
|
1.0
|
|
FE4
|
B:SF4801
|
2.7
|
12.8
|
1.0
|
|
FE3
|
B:SF4801
|
2.7
|
12.7
|
1.0
|
|
HB3
|
B:CYS509
|
2.8
|
12.8
|
1.0
|
|
CB
|
B:CYS509
|
3.1
|
10.6
|
1.0
|
|
HB3
|
B:LEU511
|
3.3
|
18.0
|
1.0
|
|
HG13
|
B:ILE534
|
3.6
|
26.8
|
1.0
|
|
HB2
|
B:CYS509
|
3.6
|
12.8
|
1.0
|
|
H
|
B:LEU511
|
3.7
|
12.7
|
1.0
|
|
S1
|
B:SF4801
|
3.9
|
16.5
|
1.0
|
|
HB2
|
B:CYS521
|
3.9
|
17.3
|
1.0
|
|
HB2
|
B:LEU511
|
4.1
|
18.0
|
1.0
|
|
CB
|
B:LEU511
|
4.2
|
14.9
|
1.0
|
|
H
|
B:CYS512
|
4.3
|
14.0
|
1.0
|
|
CA
|
B:CYS509
|
4.3
|
7.5
|
1.0
|
|
HD23
|
B:LEU511
|
4.4
|
26.7
|
1.0
|
|
C
|
B:CYS509
|
4.4
|
13.3
|
1.0
|
|
N
|
B:LEU511
|
4.4
|
10.5
|
1.0
|
|
CG1
|
B:ILE534
|
4.5
|
22.2
|
1.0
|
|
O
|
B:CYS509
|
4.5
|
15.8
|
1.0
|
|
HB
|
B:ILE534
|
4.6
|
17.1
|
1.0
|
|
HD21
|
B:ASN551
|
4.7
|
15.9
|
1.0
|
|
CB
|
B:CYS521
|
4.7
|
14.3
|
1.0
|
|
HG21
|
B:ILE534
|
4.7
|
15.6
|
1.0
|
|
HG12
|
B:ILE534
|
4.7
|
26.8
|
1.0
|
|
HA
|
B:CYS509
|
4.8
|
9.1
|
1.0
|
|
HB3
|
B:CYS521
|
4.8
|
17.3
|
1.0
|
|
SG
|
B:CYS512
|
4.8
|
16.0
|
1.0
|
|
SG
|
B:CYS521
|
4.8
|
18.2
|
1.0
|
|
CA
|
B:LEU511
|
4.9
|
11.3
|
1.0
|
|
N
|
B:CYS512
|
4.9
|
11.5
|
1.0
|
|
HD22
|
B:LEU511
|
4.9
|
26.7
|
1.0
|
|
HB2
|
B:CYS512
|
4.9
|
13.8
|
1.0
|
|
N
|
B:LEU510
|
5.0
|
15.0
|
1.0
|
|
Iron binding site 6 out
of 8 in 7nz5
Go back to
Iron Binding Sites List in 7nz5
Iron binding site 6 out
of 8 in the Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe801
b:14.6
occ:1.00
|
FE2
|
B:SF4801
|
0.0
|
14.6
|
1.0
|
|
S3
|
B:SF4801
|
2.3
|
12.4
|
1.0
|
|
S4
|
B:SF4801
|
2.3
|
13.4
|
1.0
|
|
S1
|
B:SF4801
|
2.3
|
16.5
|
1.0
|
|
SG
|
B:CYS521
|
2.5
|
18.2
|
1.0
|
|
FE1
|
B:SF4801
|
2.7
|
13.2
|
1.0
|
|
FE4
|
B:SF4801
|
2.7
|
12.8
|
1.0
|
|
FE3
|
B:SF4801
|
2.7
|
12.7
|
1.0
|
|
HB2
|
B:CYS521
|
2.9
|
17.3
|
1.0
|
|
HE2
|
B:HIS519
|
3.2
|
21.7
|
1.0
|
|
CB
|
B:CYS521
|
3.2
|
14.3
|
1.0
|
|
HB3
|
B:CYS521
|
3.5
|
17.3
|
1.0
|
|
HB3
|
B:CYS509
|
3.6
|
12.8
|
1.0
|
|
HG
|
B:LEU530
|
3.6
|
12.8
|
1.0
|
|
S2
|
B:SF4801
|
3.9
|
12.7
|
1.0
|
|
NE2
|
B:HIS519
|
4.0
|
18.0
|
1.0
|
|
H
|
B:LEU530
|
4.1
|
18.1
|
1.0
|
|
H
|
B:CYS531
|
4.1
|
14.7
|
1.0
|
|
HA3
|
B:GLY529
|
4.2
|
24.9
|
1.0
|
|
HD21
|
B:LEU530
|
4.4
|
16.6
|
1.0
|
|
CB
|
B:CYS509
|
4.5
|
10.6
|
1.0
|
|
CG
|
B:LEU530
|
4.5
|
10.5
|
1.0
|
|
HA2
|
B:GLY529
|
4.6
|
24.9
|
1.0
|
|
CA
|
B:CYS521
|
4.6
|
10.7
|
1.0
|
|
HD2
|
B:HIS519
|
4.6
|
12.9
|
1.0
|
|
HB3
|
B:CYS531
|
4.6
|
18.2
|
1.0
|
|
H
|
B:CYS521
|
4.7
|
13.7
|
1.0
|
|
N
|
B:LEU530
|
4.7
|
14.9
|
1.0
|
|
SG
|
B:CYS509
|
4.8
|
18.1
|
1.0
|
|
O
|
B:HOH1325
|
4.8
|
16.6
|
1.0
|
|
CD2
|
B:HIS519
|
4.8
|
10.7
|
1.0
|
|
HD23
|
B:LEU530
|
4.8
|
16.6
|
1.0
|
|
CA
|
B:GLY529
|
4.8
|
20.6
|
1.0
|
|
HB2
|
B:CYS512
|
4.8
|
13.8
|
1.0
|
|
HD11
|
B:LEU530
|
4.8
|
17.0
|
1.0
|
|
CD2
|
B:LEU530
|
4.8
|
13.8
|
1.0
|
|
O
|
B:CYS509
|
4.9
|
15.8
|
1.0
|
|
HB2
|
B:CYS509
|
4.9
|
12.8
|
1.0
|
|
N
|
B:CYS521
|
4.9
|
11.3
|
1.0
|
|
HA
|
B:CYS521
|
4.9
|
12.9
|
1.0
|
|
SG
|
B:CYS531
|
4.9
|
18.1
|
1.0
|
|
Iron binding site 7 out
of 8 in 7nz5
Go back to
Iron Binding Sites List in 7nz5
Iron binding site 7 out
of 8 in the Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe801
b:12.7
occ:1.00
|
FE3
|
B:SF4801
|
0.0
|
12.7
|
1.0
|
|
S4
|
B:SF4801
|
2.3
|
13.4
|
1.0
|
|
S2
|
B:SF4801
|
2.3
|
12.7
|
1.0
|
|
S1
|
B:SF4801
|
2.3
|
16.5
|
1.0
|
|
SG
|
B:CYS531
|
2.5
|
18.1
|
1.0
|
|
FE4
|
B:SF4801
|
2.7
|
12.8
|
1.0
|
|
FE1
|
B:SF4801
|
2.7
|
13.2
|
1.0
|
|
FE2
|
B:SF4801
|
2.7
|
14.6
|
1.0
|
|
HB3
|
B:CYS531
|
2.8
|
18.2
|
1.0
|
|
CB
|
B:CYS531
|
3.2
|
15.1
|
1.0
|
|
H
|
B:CYS531
|
3.3
|
14.7
|
1.0
|
|
HD11
|
B:ILE149
|
3.4
|
27.0
|
1.0
|
|
HG13
|
B:ILE534
|
3.6
|
26.8
|
1.0
|
|
HG12
|
B:ILE534
|
3.7
|
26.8
|
1.0
|
|
HB2
|
B:CYS531
|
3.9
|
18.2
|
1.0
|
|
HA3
|
B:GLY529
|
3.9
|
24.9
|
1.0
|
|
S3
|
B:SF4801
|
3.9
|
12.4
|
1.0
|
|
HB
|
B:ILE534
|
4.0
|
17.1
|
1.0
|
|
N
|
B:CYS531
|
4.0
|
12.1
|
1.0
|
|
CG1
|
B:ILE534
|
4.1
|
22.2
|
1.0
|
|
CA
|
B:CYS531
|
4.3
|
13.8
|
1.0
|
|
CD1
|
B:ILE149
|
4.3
|
22.4
|
1.0
|
|
HD13
|
B:ILE149
|
4.5
|
27.0
|
1.0
|
|
HG
|
B:LEU530
|
4.6
|
12.8
|
1.0
|
|
CB
|
B:ILE534
|
4.6
|
14.2
|
1.0
|
|
HD12
|
B:ILE149
|
4.6
|
27.0
|
1.0
|
|
H
|
B:ALA533
|
4.7
|
25.2
|
1.0
|
|
H
|
B:LEU530
|
4.7
|
18.1
|
1.0
|
|
CA
|
B:GLY529
|
4.7
|
20.6
|
1.0
|
|
H
|
B:ILE534
|
4.8
|
23.0
|
1.0
|
|
HB3
|
B:ALA533
|
4.8
|
32.7
|
1.0
|
|
C
|
B:GLY529
|
4.8
|
12.5
|
1.0
|
|
N
|
B:LEU530
|
4.9
|
14.9
|
1.0
|
|
HA
|
B:CYS531
|
4.9
|
16.7
|
1.0
|
|
SG
|
B:CYS512
|
5.0
|
16.0
|
1.0
|
|
HB3
|
B:CYS509
|
5.0
|
12.8
|
1.0
|
|
SG
|
B:CYS509
|
5.0
|
18.1
|
1.0
|
|
Iron binding site 8 out
of 8 in 7nz5
Go back to
Iron Binding Sites List in 7nz5
Iron binding site 8 out
of 8 in the Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Monomeric Acetyl-Coa Synthase with Zn at the Proximal Position of Cluster A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe801
b:12.8
occ:1.00
|
FE4
|
B:SF4801
|
0.0
|
12.8
|
1.0
|
|
S1
|
B:SF4801
|
2.3
|
16.5
|
1.0
|
|
S2
|
B:SF4801
|
2.3
|
12.7
|
1.0
|
|
S3
|
B:SF4801
|
2.3
|
12.4
|
1.0
|
|
SG
|
B:CYS512
|
2.5
|
16.0
|
1.0
|
|
FE1
|
B:SF4801
|
2.7
|
13.2
|
1.0
|
|
FE2
|
B:SF4801
|
2.7
|
14.6
|
1.0
|
|
FE3
|
B:SF4801
|
2.7
|
12.7
|
1.0
|
|
HB2
|
B:CYS512
|
3.2
|
13.8
|
1.0
|
|
CB
|
B:CYS512
|
3.5
|
11.4
|
1.0
|
|
HD11
|
B:ILE149
|
3.6
|
27.0
|
1.0
|
|
H
|
B:CYS512
|
3.7
|
14.0
|
1.0
|
|
ZN
|
B:ZN802
|
3.8
|
6.3
|
0.5
|
|
HD12
|
B:ILE149
|
3.8
|
27.0
|
1.0
|
|
S4
|
B:SF4801
|
3.9
|
13.4
|
1.0
|
|
HB3
|
B:LEU511
|
3.9
|
18.0
|
1.0
|
|
HB3
|
B:CYS531
|
4.0
|
18.2
|
1.0
|
|
CD1
|
B:ILE149
|
4.1
|
22.4
|
1.0
|
|
HD13
|
B:ILE149
|
4.1
|
27.0
|
1.0
|
|
N
|
B:CYS512
|
4.2
|
11.5
|
1.0
|
|
HB3
|
B:CYS512
|
4.2
|
13.8
|
1.0
|
|
SG
|
B:CYS598
|
4.3
|
17.3
|
1.0
|
|
CA
|
B:CYS512
|
4.4
|
12.7
|
1.0
|
|
HE2
|
B:HIS519
|
4.4
|
21.7
|
1.0
|
|
SG
|
B:CYS600
|
4.5
|
15.3
|
1.0
|
|
HD23
|
B:LEU511
|
4.6
|
26.7
|
1.0
|
|
HG21
|
B:VAL152
|
4.6
|
19.8
|
1.0
|
|
HD2
|
B:HIS519
|
4.6
|
12.9
|
1.0
|
|
HA
|
B:CYS512
|
4.7
|
15.3
|
1.0
|
|
O
|
B:HOH1360
|
4.8
|
12.3
|
1.0
|
|
CB
|
B:CYS531
|
4.8
|
15.1
|
1.0
|
|
CB
|
B:LEU511
|
4.9
|
14.9
|
1.0
|
|
SG
|
B:CYS531
|
4.9
|
18.1
|
1.0
|
|
H
|
B:CYS531
|
4.9
|
14.7
|
1.0
|
|
H
|
B:LEU511
|
4.9
|
12.7
|
1.0
|
|
SG
|
B:CYS509
|
5.0
|
18.1
|
1.0
|
|
Reference:
J.Kreibich,
J.H.Jeoung,
H.Dobbek.
Ligand Binding at the Ni,Ni-[4FE-4S] Cluster of Acetyl-Coa Synthase To Be Published.
Page generated: Thu Aug 8 10:00:13 2024
|
