Iron in PDB 7o26: Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine)
Protein crystallography data
The structure of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine), PDB code: 7o26
was solved by
R.Rohac,
L.Martin,
L.Liu,
D.Basu,
L.Tao,
R.D.Britt,
T.Rauchfuss,
Y.Nicolet,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.81 /
1.50
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
50.88,
79.84,
86.17,
90,
90,
90
|
R / Rfree (%)
|
17.8 /
21.7
|
Other elements in 7o26:
The structure of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine) also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine)
(pdb code 7o26). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 9 binding sites of Iron where determined in the
Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine), PDB code: 7o26:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Iron binding site 1 out
of 9 in 7o26
Go back to
Iron Binding Sites List in 7o26
Iron binding site 1 out
of 9 in the Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe402
b:21.0
occ:0.76
|
C
|
A:CYN405
|
1.8
|
22.9
|
0.7
|
C
|
A:CMO403
|
1.8
|
19.4
|
0.7
|
C
|
A:CMO404
|
1.8
|
21.1
|
0.9
|
O
|
A:CYS401
|
2.1
|
29.1
|
0.8
|
N
|
A:CYS401
|
2.1
|
20.9
|
0.8
|
SG
|
A:CYS401
|
2.2
|
26.4
|
0.8
|
CA
|
A:CYS401
|
2.7
|
25.3
|
0.8
|
C
|
A:CYS401
|
2.8
|
32.2
|
0.8
|
N
|
A:CYN405
|
2.9
|
22.4
|
0.7
|
O
|
A:CMO403
|
3.0
|
21.6
|
0.7
|
O
|
A:CMO404
|
3.0
|
19.3
|
0.9
|
CB
|
A:CYS401
|
3.0
|
28.0
|
0.8
|
NH2
|
A:ARG159
|
3.3
|
14.9
|
0.4
|
CL
|
A:CL419
|
3.8
|
31.1
|
0.1
|
CL
|
A:CL419
|
3.9
|
24.7
|
0.2
|
OXT
|
A:CYS401
|
4.0
|
32.1
|
0.8
|
CZ
|
A:ARG159
|
4.3
|
14.7
|
0.4
|
NH1
|
A:ARG159
|
4.4
|
29.3
|
0.6
|
SD
|
A:MET291
|
4.5
|
23.9
|
0.6
|
CE
|
A:MET291
|
4.6
|
14.2
|
0.6
|
OG1
|
A:THR269
|
4.7
|
24.6
|
0.8
|
CD1
|
A:ILE56
|
4.7
|
20.1
|
0.5
|
O
|
A:HOH586
|
4.7
|
21.4
|
1.0
|
NE
|
A:ARG159
|
4.8
|
16.4
|
0.4
|
CD2
|
A:LEU157
|
4.8
|
23.6
|
0.6
|
CG2
|
A:THR268
|
4.8
|
15.7
|
1.0
|
CB
|
A:THR268
|
4.8
|
14.5
|
1.0
|
NE2
|
A:GLN107
|
4.9
|
17.4
|
1.0
|
|
Iron binding site 2 out
of 9 in 7o26
Go back to
Iron Binding Sites List in 7o26
Iron binding site 2 out
of 9 in the Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe410
b:21.4
occ:0.45
|
FE1
|
A:FES410
|
0.0
|
21.4
|
0.5
|
FE1
|
A:FES410
|
1.0
|
28.6
|
0.3
|
SG
|
A:CYS311
|
1.6
|
33.4
|
0.3
|
S2
|
A:FES410
|
2.0
|
28.5
|
0.3
|
S
|
A:H2S407
|
2.1
|
18.1
|
0.5
|
SG
|
A:CYS311
|
2.2
|
36.5
|
0.7
|
S1
|
A:FES410
|
2.2
|
26.8
|
0.5
|
S2
|
A:FES410
|
2.2
|
23.7
|
0.5
|
SG
|
A:CYS319
|
2.2
|
16.2
|
0.1
|
FE2
|
A:FES410
|
2.6
|
25.1
|
0.5
|
S1
|
A:FES410
|
2.7
|
29.4
|
0.3
|
FE2
|
A:FES410
|
2.7
|
23.7
|
0.3
|
CB
|
A:CYS311
|
2.8
|
42.2
|
0.3
|
SG
|
A:CYS319
|
3.2
|
23.1
|
0.9
|
CB
|
A:CYS311
|
3.3
|
27.9
|
0.7
|
CB
|
A:CYS319
|
3.7
|
17.4
|
0.9
|
CB
|
A:CYS319
|
3.8
|
23.2
|
0.1
|
SG
|
A:CYS322
|
3.8
|
20.5
|
0.1
|
CA
|
A:CYS311
|
4.0
|
24.1
|
0.7
|
CA
|
A:CYS311
|
4.1
|
35.8
|
0.3
|
O
|
A:HOH720
|
4.1
|
38.9
|
1.0
|
CA
|
A:CYS319
|
4.2
|
21.5
|
0.1
|
CA
|
A:CYS319
|
4.2
|
17.0
|
0.9
|
NH1
|
A:ARG279
|
4.5
|
24.2
|
1.0
|
N
|
A:CYS311
|
4.5
|
27.9
|
0.7
|
NH2
|
A:ARG279
|
4.6
|
23.1
|
1.0
|
N
|
A:CYS311
|
4.7
|
29.1
|
0.3
|
S
|
A:H2S408
|
4.7
|
20.7
|
0.3
|
SG
|
A:CYS322
|
4.8
|
19.5
|
0.5
|
CB
|
A:CYS322
|
4.9
|
18.8
|
0.1
|
CB
|
A:CYS322
|
4.9
|
18.8
|
0.4
|
CB
|
A:CYS322
|
4.9
|
20.0
|
0.5
|
|
Iron binding site 3 out
of 9 in 7o26
Go back to
Iron Binding Sites List in 7o26
Iron binding site 3 out
of 9 in the Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe410
b:28.6
occ:0.30
|
FE1
|
A:FES410
|
0.0
|
28.6
|
0.3
|
FE1
|
A:FES410
|
1.0
|
21.4
|
0.5
|
S
|
A:H2S407
|
1.3
|
18.1
|
0.5
|
SG
|
A:CYS319
|
1.9
|
16.2
|
0.1
|
S1
|
A:FES410
|
2.2
|
29.4
|
0.3
|
S2
|
A:FES410
|
2.2
|
28.5
|
0.3
|
SG
|
A:CYS311
|
2.3
|
33.4
|
0.3
|
SG
|
A:CYS319
|
2.5
|
23.1
|
0.9
|
S1
|
A:FES410
|
2.6
|
26.8
|
0.5
|
S2
|
A:FES410
|
2.7
|
23.7
|
0.5
|
FE2
|
A:FES410
|
2.8
|
23.7
|
0.3
|
SG
|
A:CYS311
|
2.8
|
36.5
|
0.7
|
CB
|
A:CYS311
|
3.0
|
42.2
|
0.3
|
CB
|
A:CYS319
|
3.1
|
17.4
|
0.9
|
FE2
|
A:FES410
|
3.1
|
25.1
|
0.5
|
CB
|
A:CYS319
|
3.2
|
23.2
|
0.1
|
CA
|
A:CYS319
|
3.4
|
17.0
|
0.9
|
CA
|
A:CYS319
|
3.4
|
21.5
|
0.1
|
CB
|
A:CYS311
|
3.5
|
27.9
|
0.7
|
SG
|
A:CYS322
|
3.6
|
20.5
|
0.1
|
CA
|
A:CYS311
|
4.2
|
24.1
|
0.7
|
N
|
A:CYS319
|
4.2
|
19.9
|
1.0
|
CA
|
A:CYS311
|
4.2
|
35.8
|
0.3
|
CB
|
A:CYS322
|
4.4
|
18.8
|
0.1
|
CB
|
A:CYS322
|
4.4
|
18.8
|
0.4
|
CB
|
A:CYS322
|
4.4
|
20.0
|
0.5
|
SG
|
A:CYS322
|
4.5
|
19.5
|
0.5
|
CG
|
A:GLU314
|
4.5
|
35.5
|
1.0
|
SG
|
A:CYS322
|
4.6
|
26.7
|
0.4
|
C
|
A:CYS319
|
4.6
|
15.4
|
1.0
|
O
|
A:CYS319
|
4.7
|
18.3
|
1.0
|
C
|
A:ALA318
|
4.8
|
22.3
|
1.0
|
O
|
A:HOH720
|
4.9
|
38.9
|
1.0
|
N
|
A:CYS311
|
4.9
|
27.9
|
0.7
|
S
|
A:H2S408
|
4.9
|
20.7
|
0.3
|
CB
|
A:GLU314
|
5.0
|
32.7
|
1.0
|
|
Iron binding site 4 out
of 9 in 7o26
Go back to
Iron Binding Sites List in 7o26
Iron binding site 4 out
of 9 in the Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe410
b:25.1
occ:0.45
|
FE2
|
A:FES410
|
0.0
|
25.1
|
0.5
|
S2
|
A:FES410
|
1.5
|
28.5
|
0.3
|
FE2
|
A:FES410
|
1.7
|
23.7
|
0.3
|
S2
|
A:FES410
|
2.2
|
23.7
|
0.5
|
S1
|
A:FES410
|
2.2
|
26.8
|
0.5
|
S
|
A:H2S408
|
2.2
|
20.7
|
0.3
|
SG
|
A:CYS322
|
2.4
|
20.5
|
0.1
|
FE1
|
A:FES410
|
2.6
|
21.4
|
0.5
|
NH2
|
A:ARG279
|
2.6
|
23.1
|
1.0
|
NH1
|
A:ARG279
|
3.1
|
24.2
|
1.0
|
FE1
|
A:FES410
|
3.1
|
28.6
|
0.3
|
CZ
|
A:ARG279
|
3.3
|
20.4
|
1.0
|
SG
|
A:CYS322
|
3.4
|
19.5
|
0.5
|
SG
|
A:CYS311
|
3.6
|
33.4
|
0.3
|
S1
|
A:FES410
|
3.6
|
29.4
|
0.3
|
CB
|
A:CYS322
|
4.1
|
18.8
|
0.4
|
CB
|
A:CYS322
|
4.1
|
20.0
|
0.5
|
CB
|
A:CYS322
|
4.1
|
18.8
|
0.1
|
CG1
|
A:VAL323
|
4.1
|
14.8
|
1.0
|
O
|
A:HOH790
|
4.2
|
44.5
|
1.0
|
SG
|
A:CYS311
|
4.3
|
36.5
|
0.7
|
SG
|
A:CYS319
|
4.3
|
16.2
|
0.1
|
S
|
A:H2S407
|
4.4
|
18.1
|
0.5
|
CE
|
A:MET326
|
4.6
|
20.9
|
1.0
|
NE
|
A:ARG279
|
4.6
|
20.4
|
1.0
|
O
|
A:HOH574
|
4.6
|
26.7
|
1.0
|
O
|
A:CYS319
|
5.0
|
18.3
|
1.0
|
N
|
A:VAL323
|
5.0
|
14.4
|
1.0
|
CD1
|
A:ILE310
|
5.0
|
35.0
|
1.0
|
|
Iron binding site 5 out
of 9 in 7o26
Go back to
Iron Binding Sites List in 7o26
Iron binding site 5 out
of 9 in the Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe410
b:23.7
occ:0.30
|
FE2
|
A:FES410
|
0.0
|
23.7
|
0.3
|
FE2
|
A:FES410
|
1.7
|
25.1
|
0.5
|
S1
|
A:FES410
|
1.8
|
26.8
|
0.5
|
SG
|
A:CYS322
|
1.8
|
20.5
|
0.1
|
S2
|
A:FES410
|
2.2
|
28.5
|
0.3
|
S1
|
A:FES410
|
2.2
|
29.4
|
0.3
|
SG
|
A:CYS322
|
2.3
|
19.5
|
0.5
|
S
|
A:H2S408
|
2.5
|
20.7
|
0.3
|
FE1
|
A:FES410
|
2.7
|
21.4
|
0.5
|
FE1
|
A:FES410
|
2.8
|
28.6
|
0.3
|
CB
|
A:CYS322
|
3.2
|
18.8
|
0.4
|
CB
|
A:CYS322
|
3.2
|
20.0
|
0.5
|
CB
|
A:CYS322
|
3.2
|
18.8
|
0.1
|
S2
|
A:FES410
|
3.3
|
23.7
|
0.5
|
SG
|
A:CYS311
|
3.6
|
33.4
|
0.3
|
SG
|
A:CYS322
|
3.7
|
26.7
|
0.4
|
O
|
A:HOH790
|
3.8
|
44.5
|
1.0
|
S
|
A:H2S407
|
3.8
|
18.1
|
0.5
|
NH2
|
A:ARG279
|
3.9
|
23.1
|
1.0
|
SG
|
A:CYS319
|
4.5
|
16.2
|
0.1
|
CA
|
A:CYS322
|
4.5
|
16.0
|
0.1
|
CA
|
A:CYS322
|
4.6
|
15.7
|
0.4
|
CA
|
A:CYS322
|
4.6
|
15.7
|
0.5
|
SG
|
A:CYS311
|
4.7
|
36.5
|
0.7
|
O
|
A:HOH820
|
4.8
|
42.9
|
0.9
|
CZ
|
A:ARG279
|
4.8
|
20.4
|
1.0
|
NH1
|
A:ARG279
|
4.8
|
24.2
|
1.0
|
C
|
A:CYS322
|
4.8
|
16.5
|
1.0
|
O
|
A:HOH574
|
4.9
|
26.7
|
1.0
|
CA
|
A:CYS319
|
5.0
|
17.0
|
0.9
|
CA
|
A:CYS319
|
5.0
|
21.5
|
0.1
|
|
Iron binding site 6 out
of 9 in 7o26
Go back to
Iron Binding Sites List in 7o26
Iron binding site 6 out
of 9 in the Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe417
b:21.1
occ:1.00
|
FE1
|
A:SF4417
|
0.0
|
21.1
|
1.0
|
SG
|
A:CYS70
|
2.3
|
19.5
|
1.0
|
S3
|
A:SF4417
|
2.3
|
19.4
|
1.0
|
S4
|
A:SF4417
|
2.3
|
20.7
|
1.0
|
S2
|
A:SF4417
|
2.3
|
20.4
|
1.0
|
FE3
|
A:SF4417
|
2.7
|
21.2
|
1.0
|
FE2
|
A:SF4417
|
2.7
|
20.2
|
1.0
|
FE4
|
A:SF4417
|
2.8
|
24.0
|
1.0
|
CB
|
A:CYS70
|
3.0
|
18.5
|
1.0
|
S1
|
A:SF4417
|
3.8
|
21.6
|
1.0
|
SD
|
A:MET406
|
4.2
|
33.2
|
1.0
|
CB
|
A:LEU72
|
4.3
|
21.0
|
1.0
|
CA
|
A:CYS70
|
4.5
|
20.6
|
1.0
|
CE
|
A:MET406
|
4.6
|
31.4
|
1.0
|
CD2
|
A:LEU305
|
4.7
|
33.2
|
1.0
|
N
|
A:ARG73
|
4.7
|
20.9
|
1.0
|
SG
|
A:CYS67
|
4.7
|
21.8
|
1.0
|
C
|
A:LEU72
|
4.8
|
20.7
|
1.0
|
CB
|
A:CYS67
|
4.8
|
17.6
|
1.0
|
SG
|
A:CYS63
|
4.8
|
20.5
|
1.0
|
OXT
|
A:MET406
|
4.8
|
36.0
|
1.0
|
N
|
A:LEU72
|
4.9
|
20.1
|
1.0
|
CG
|
A:LEU72
|
4.9
|
22.0
|
1.0
|
CA
|
A:LEU72
|
4.9
|
19.9
|
1.0
|
C
|
A:CYS70
|
5.0
|
23.5
|
1.0
|
|
Iron binding site 7 out
of 9 in 7o26
Go back to
Iron Binding Sites List in 7o26
Iron binding site 7 out
of 9 in the Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe417
b:20.2
occ:1.00
|
FE2
|
A:SF4417
|
0.0
|
20.2
|
1.0
|
SG
|
A:CYS63
|
2.2
|
20.5
|
1.0
|
S4
|
A:SF4417
|
2.3
|
20.7
|
1.0
|
S1
|
A:SF4417
|
2.3
|
21.6
|
1.0
|
S3
|
A:SF4417
|
2.3
|
19.4
|
1.0
|
FE1
|
A:SF4417
|
2.7
|
21.1
|
1.0
|
FE3
|
A:SF4417
|
2.7
|
21.2
|
1.0
|
FE4
|
A:SF4417
|
2.8
|
24.0
|
1.0
|
CB
|
A:CYS63
|
3.3
|
22.6
|
1.0
|
S2
|
A:SF4417
|
3.9
|
20.4
|
1.0
|
CB
|
A:LYS65
|
4.2
|
17.8
|
1.0
|
N
|
A:MET406
|
4.2
|
33.2
|
1.0
|
N
|
A:GLU110
|
4.4
|
18.7
|
1.0
|
CA
|
A:GLY109
|
4.6
|
17.9
|
1.0
|
O
|
A:LYS65
|
4.6
|
23.8
|
1.0
|
CA
|
A:CYS63
|
4.7
|
19.4
|
1.0
|
SG
|
A:CYS70
|
4.8
|
19.5
|
1.0
|
N
|
A:LYS65
|
4.8
|
19.8
|
1.0
|
SG
|
A:CYS67
|
4.8
|
21.8
|
1.0
|
C
|
A:LYS65
|
4.8
|
20.3
|
1.0
|
CA
|
A:LYS65
|
4.8
|
18.7
|
1.0
|
OXT
|
A:MET406
|
4.8
|
36.0
|
1.0
|
O
|
A:LEU72
|
4.9
|
22.3
|
1.0
|
CB
|
A:LEU72
|
5.0
|
21.0
|
1.0
|
|
Iron binding site 8 out
of 9 in 7o26
Go back to
Iron Binding Sites List in 7o26
Iron binding site 8 out
of 9 in the Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe417
b:21.2
occ:1.00
|
FE3
|
A:SF4417
|
0.0
|
21.2
|
1.0
|
S1
|
A:SF4417
|
2.3
|
21.6
|
1.0
|
S4
|
A:SF4417
|
2.3
|
20.7
|
1.0
|
S2
|
A:SF4417
|
2.3
|
20.4
|
1.0
|
SG
|
A:CYS67
|
2.3
|
21.8
|
1.0
|
FE1
|
A:SF4417
|
2.7
|
21.1
|
1.0
|
FE2
|
A:SF4417
|
2.7
|
20.2
|
1.0
|
FE4
|
A:SF4417
|
2.9
|
24.0
|
1.0
|
CB
|
A:CYS67
|
3.2
|
17.6
|
1.0
|
O
|
A:HOH590
|
3.9
|
21.0
|
1.0
|
S3
|
A:SF4417
|
3.9
|
19.4
|
1.0
|
OXT
|
A:MET406
|
4.2
|
36.0
|
1.0
|
N
|
A:CYS67
|
4.3
|
19.4
|
1.0
|
CB
|
A:LYS65
|
4.4
|
17.8
|
1.0
|
CA
|
A:CYS67
|
4.4
|
18.7
|
1.0
|
CB
|
A:CYS70
|
4.4
|
18.5
|
1.0
|
NH2
|
A:ARG172
|
4.5
|
22.6
|
1.0
|
SG
|
A:CYS70
|
4.6
|
19.5
|
1.0
|
OH
|
A:TYR69
|
4.7
|
19.0
|
1.0
|
SG
|
A:CYS63
|
4.7
|
20.5
|
1.0
|
O
|
A:HOH583
|
4.8
|
18.3
|
1.0
|
CE1
|
A:TYR69
|
4.9
|
17.4
|
1.0
|
CD
|
A:LYS65
|
4.9
|
18.4
|
1.0
|
NE
|
A:ARG172
|
5.0
|
21.3
|
1.0
|
|
Iron binding site 9 out
of 9 in 7o26
Go back to
Iron Binding Sites List in 7o26
Iron binding site 9 out
of 9 in the Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Complex-B Bound [Fefe]-Hydrogenase Maturase Hyde Fromt. Maritima (5'Da + Methionine) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe417
b:24.0
occ:1.00
|
FE4
|
A:SF4417
|
0.0
|
24.0
|
1.0
|
OXT
|
A:MET406
|
2.2
|
36.0
|
1.0
|
S2
|
A:SF4417
|
2.3
|
20.4
|
1.0
|
S3
|
A:SF4417
|
2.3
|
19.4
|
1.0
|
S1
|
A:SF4417
|
2.3
|
21.6
|
1.0
|
N
|
A:MET406
|
2.5
|
33.2
|
1.0
|
FE1
|
A:SF4417
|
2.8
|
21.1
|
1.0
|
SD
|
A:MET406
|
2.8
|
33.2
|
1.0
|
FE2
|
A:SF4417
|
2.8
|
20.2
|
1.0
|
FE3
|
A:SF4417
|
2.9
|
21.2
|
1.0
|
C
|
A:MET406
|
3.1
|
36.5
|
1.0
|
CA
|
A:MET406
|
3.3
|
34.4
|
1.0
|
CE
|
A:MET406
|
3.8
|
31.4
|
1.0
|
CG
|
A:MET406
|
3.9
|
33.7
|
1.0
|
S4
|
A:SF4417
|
4.0
|
20.7
|
1.0
|
CB
|
A:MET406
|
4.1
|
33.0
|
1.0
|
O
|
A:HOH590
|
4.1
|
21.0
|
1.0
|
O
|
A:HOH583
|
4.2
|
18.3
|
1.0
|
O
|
A:MET406
|
4.3
|
36.6
|
1.0
|
SG
|
A:CYS63
|
4.7
|
20.5
|
1.0
|
SG
|
A:CYS70
|
4.8
|
19.5
|
1.0
|
|
Reference:
Y.Nicolet,
J.K.Rubach,
M.C.Posewitz,
P.Amara,
C.Mathevon,
M.Atta,
M.Fontecave,
J.C.Fontecilla-Camps.
X-Ray Structure of the [Fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima* Journal of Biological V. 283 18861 2008CHEMISTRY.
DOI: 10.1074/JBC.M801161200
Page generated: Thu Aug 8 10:25:39 2024
|