Iron in PDB 7o3e: Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation

Enzymatic activity of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation

All present enzymatic activity of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation:
7.1.1.8; 7.1.1.9;

Other elements in 7o3e:

The structure of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation also contains other interesting chemical elements:

Sodium (Na) 1 atom
Zinc (Zn) 1 atom
Copper (Cu) 3 atoms
Magnesium (Mg) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation (pdb code 7o3e). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation, PDB code: 7o3e:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 7o3e

Go back to Iron Binding Sites List in 7o3e
Iron binding site 1 out of 8 in the Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:127.6
occ:1.00
FE C:HEM401 0.0 127.6 1.0
NA C:HEM401 2.0 116.4 1.0
NC C:HEM401 2.0 103.1 1.0
ND C:HEM401 2.0 103.2 1.0
NB C:HEM401 2.0 104.8 1.0
NE2 C:HIS83 2.1 85.2 1.0
NE2 C:HIS182 2.1 82.0 1.0
CE1 C:HIS83 2.9 79.5 1.0
C1A C:HEM401 3.0 104.0 1.0
C4D C:HEM401 3.0 93.6 1.0
C4C C:HEM401 3.0 98.0 1.0
C1D C:HEM401 3.0 105.3 1.0
CE1 C:HIS182 3.0 85.1 1.0
C4B C:HEM401 3.0 101.5 1.0
C1B C:HEM401 3.0 108.2 1.0
C1C C:HEM401 3.1 110.5 1.0
C4A C:HEM401 3.1 101.3 1.0
CD2 C:HIS83 3.2 80.4 1.0
CD2 C:HIS182 3.2 81.2 1.0
CHA C:HEM401 3.4 96.4 1.0
CHD C:HEM401 3.4 100.7 1.0
CHC C:HEM401 3.4 104.9 1.0
CHB C:HEM401 3.5 105.3 1.0
ND1 C:HIS83 4.1 74.7 1.0
ND1 C:HIS182 4.1 80.4 1.0
C2A C:HEM401 4.2 98.5 1.0
C3C C:HEM401 4.2 104.0 1.0
C2B C:HEM401 4.2 104.0 1.0
C3A C:HEM401 4.2 94.4 1.0
C2C C:HEM401 4.2 110.7 1.0
C3D C:HEM401 4.2 94.9 1.0
CG C:HIS83 4.2 70.9 1.0
C2D C:HEM401 4.3 107.9 1.0
C3B C:HEM401 4.3 106.4 1.0
CG C:HIS182 4.3 78.0 1.0
CA C:GLY130 4.6 67.8 1.0
OE1 C:GLN44 4.8 95.5 1.0

Iron binding site 2 out of 8 in 7o3e

Go back to Iron Binding Sites List in 7o3e
Iron binding site 2 out of 8 in the Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe402

b:40.6
occ:1.00
FE C:HEM402 0.0 40.6 1.0
NA C:HEM402 2.0 46.0 1.0
NC C:HEM402 2.0 35.4 1.0
ND C:HEM402 2.0 40.9 1.0
NB C:HEM402 2.0 47.8 1.0
NE2 C:HIS196 2.1 39.6 1.0
NE2 C:HIS97 2.2 42.4 1.0
CE1 C:HIS196 2.9 45.8 1.0
CE1 C:HIS97 2.9 39.6 1.0
C4D C:HEM402 3.0 44.3 1.0
C1A C:HEM402 3.0 49.3 1.0
C4C C:HEM402 3.0 37.7 1.0
C1D C:HEM402 3.0 37.9 1.0
C4B C:HEM402 3.0 47.9 1.0
C1B C:HEM402 3.0 49.6 1.0
C1C C:HEM402 3.0 40.0 1.0
C4A C:HEM402 3.0 44.7 1.0
CD2 C:HIS196 3.2 37.8 1.0
CD2 C:HIS97 3.3 36.0 1.0
CHA C:HEM402 3.4 55.2 1.0
CHD C:HEM402 3.4 38.3 1.0
CHC C:HEM402 3.4 46.2 1.0
CHB C:HEM402 3.5 47.6 1.0
ND1 C:HIS196 4.0 43.0 1.0
ND1 C:HIS97 4.0 44.0 1.0
C2A C:HEM402 4.2 53.3 1.0
C3C C:HEM402 4.2 46.1 1.0
CG C:HIS196 4.2 41.5 1.0
C2C C:HEM402 4.2 40.5 1.0
C3A C:HEM402 4.2 46.2 1.0
C2D C:HEM402 4.2 34.6 1.0
C3D C:HEM402 4.2 36.6 1.0
C2B C:HEM402 4.2 45.2 1.0
CG C:HIS97 4.2 33.5 1.0
C3B C:HEM402 4.3 49.5 1.0

Iron binding site 3 out of 8 in 7o3e

Go back to Iron Binding Sites List in 7o3e
Iron binding site 3 out of 8 in the Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe302

b:137.2
occ:1.00
FE D:HEC302 0.0 137.2 1.0
ND D:HEC302 2.0 123.9 1.0
NA D:HEC302 2.0 122.2 1.0
NE2 D:HIS41 2.0 117.4 1.0
NC D:HEC302 2.1 113.3 1.0
NB D:HEC302 2.1 111.3 1.0
SD D:MET160 2.4 138.0 1.0
CD2 D:HIS41 2.9 110.1 1.0
C4D D:HEC302 3.0 123.2 1.0
C1A D:HEC302 3.0 126.0 1.0
C1D D:HEC302 3.0 118.5 1.0
C4A D:HEC302 3.1 114.9 1.0
C4C D:HEC302 3.1 112.5 1.0
C1B D:HEC302 3.1 108.8 1.0
C1C D:HEC302 3.1 110.7 1.0
C4B D:HEC302 3.1 113.2 1.0
CE1 D:HIS41 3.1 108.6 1.0
CHA D:HEC302 3.4 128.7 1.0
CHD D:HEC302 3.4 117.0 1.0
CHB D:HEC302 3.4 110.4 1.0
CHC D:HEC302 3.5 115.0 1.0
CE D:MET160 3.6 155.1 1.0
CG D:MET160 3.8 137.3 1.0
CG D:HIS41 4.1 98.1 1.0
ND1 D:HIS41 4.2 104.1 1.0
CB D:MET160 4.2 136.6 1.0
C2A D:HEC302 4.3 114.7 1.0
C3A D:HEC302 4.3 120.9 1.0
C3D D:HEC302 4.3 115.8 1.0
C2D D:HEC302 4.3 122.7 1.0
C3C D:HEC302 4.3 114.1 1.0
C2C D:HEC302 4.3 113.3 1.0
C2B D:HEC302 4.3 118.2 1.0
C3B D:HEC302 4.3 116.8 1.0

Iron binding site 4 out of 8 in 7o3e

Go back to Iron Binding Sites List in 7o3e
Iron binding site 4 out of 8 in the Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Fe401

b:122.0
occ:1.00
FE N:HEM401 0.0 122.0 1.0
NA N:HEM401 2.0 119.8 1.0
NC N:HEM401 2.0 115.2 1.0
ND N:HEM401 2.0 106.7 1.0
NB N:HEM401 2.0 101.8 1.0
NE2 N:HIS83 2.1 69.7 1.0
NE2 N:HIS182 2.2 91.0 1.0
CE1 N:HIS83 2.8 65.2 1.0
CE1 N:HIS182 2.9 87.5 1.0
C1A N:HEM401 3.0 114.1 1.0
C4C N:HEM401 3.0 113.5 1.0
C4D N:HEM401 3.0 104.0 1.0
C1D N:HEM401 3.0 111.3 1.0
C1B N:HEM401 3.0 102.5 1.0
C4B N:HEM401 3.0 105.4 1.0
C4A N:HEM401 3.0 109.4 1.0
C1C N:HEM401 3.1 122.1 1.0
CD2 N:HIS83 3.3 63.0 1.0
CHA N:HEM401 3.4 113.6 1.0
CHD N:HEM401 3.4 117.0 1.0
CD2 N:HIS182 3.4 94.4 1.0
CHB N:HEM401 3.4 105.4 1.0
CHC N:HEM401 3.5 117.0 1.0
ND1 N:HIS83 4.0 56.0 1.0
ND1 N:HIS182 4.1 89.0 1.0
C2A N:HEM401 4.2 105.4 1.0
C3C N:HEM401 4.2 110.5 1.0
C3A N:HEM401 4.2 105.1 1.0
C2B N:HEM401 4.2 95.9 1.0
C2C N:HEM401 4.2 108.4 1.0
CG N:HIS83 4.2 57.4 1.0
C2D N:HEM401 4.3 99.9 1.0
C3D N:HEM401 4.3 99.7 1.0
C3B N:HEM401 4.3 99.3 1.0
CG N:HIS182 4.4 85.7 1.0
CA N:GLY130 4.6 69.1 1.0
OE1 N:GLN44 4.7 80.3 1.0

Iron binding site 5 out of 8 in 7o3e

Go back to Iron Binding Sites List in 7o3e
Iron binding site 5 out of 8 in the Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Fe402

b:48.2
occ:1.00
FE N:HEM402 0.0 48.2 1.0
NA N:HEM402 2.0 57.9 1.0
ND N:HEM402 2.0 60.0 1.0
NC N:HEM402 2.0 52.5 1.0
NB N:HEM402 2.0 50.9 1.0
NE2 N:HIS97 2.1 39.4 1.0
NE2 N:HIS196 2.1 52.7 1.0
CD2 N:HIS196 2.9 52.9 1.0
CD2 N:HIS97 2.9 28.7 1.0
C4D N:HEM402 3.0 65.3 1.0
C1A N:HEM402 3.0 57.5 1.0
C1D N:HEM402 3.0 54.2 1.0
C4C N:HEM402 3.0 53.4 1.0
C1B N:HEM402 3.0 54.2 1.0
C4B N:HEM402 3.0 53.9 1.0
C4A N:HEM402 3.0 64.5 1.0
C1C N:HEM402 3.1 53.3 1.0
CE1 N:HIS196 3.2 60.8 1.0
CE1 N:HIS97 3.2 45.3 1.0
CHA N:HEM402 3.4 63.4 1.0
CHD N:HEM402 3.4 47.7 1.0
CHB N:HEM402 3.5 64.6 1.0
CHC N:HEM402 3.5 52.6 1.0
CG N:HIS196 4.1 59.2 1.0
CG N:HIS97 4.1 27.7 1.0
ND1 N:HIS196 4.2 58.7 1.0
C2A N:HEM402 4.2 55.6 1.0
C3C N:HEM402 4.2 58.1 1.0
C2C N:HEM402 4.2 49.6 1.0
ND1 N:HIS97 4.2 40.6 1.0
C3A N:HEM402 4.2 58.8 1.0
C3D N:HEM402 4.2 58.8 1.0
C2B N:HEM402 4.2 50.4 1.0
C2D N:HEM402 4.2 64.8 1.0
C3B N:HEM402 4.3 57.8 1.0
NH2 N:ARG100 4.9 68.7 1.0

Iron binding site 6 out of 8 in 7o3e

Go back to Iron Binding Sites List in 7o3e
Iron binding site 6 out of 8 in the Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe603

b:54.1
occ:1.00
FE a:HEA603 0.0 54.1 1.0
NE2 a:HIS378 2.0 29.0 1.0
NC a:HEA603 2.0 30.0 1.0
ND a:HEA603 2.0 20.2 1.0
NA a:HEA603 2.0 22.1 1.0
NB a:HEA603 2.0 22.7 1.0
NE2 a:HIS61 2.2 23.2 1.0
CE1 a:HIS378 2.7 20.6 1.0
CE1 a:HIS61 2.9 21.4 1.0
C1B a:HEA603 3.0 24.8 1.0
C1D a:HEA603 3.0 20.1 1.0
C4C a:HEA603 3.0 24.9 1.0
C4A a:HEA603 3.0 21.6 1.0
C1C a:HEA603 3.0 29.2 1.0
C1A a:HEA603 3.0 23.5 1.0
C4D a:HEA603 3.0 22.5 1.0
C4B a:HEA603 3.0 20.9 1.0
CD2 a:HIS378 3.2 22.8 1.0
CD2 a:HIS61 3.4 30.2 1.0
CHB a:HEA603 3.4 26.0 1.0
CHA a:HEA603 3.4 24.5 1.0
CHC a:HEA603 3.4 24.0 1.0
CHD a:HEA603 3.4 21.8 1.0
ND1 a:HIS378 3.9 13.5 1.0
ND1 a:HIS61 4.1 21.7 1.0
CG a:HIS378 4.2 14.7 1.0
C3A a:HEA603 4.3 21.8 1.0
C2D a:HEA603 4.3 24.1 1.0
C3C a:HEA603 4.3 25.1 1.0
C2B a:HEA603 4.3 19.3 1.0
C2C a:HEA603 4.3 19.3 1.0
C3B a:HEA603 4.3 23.6 1.0
C2A a:HEA603 4.3 26.8 1.0
C3D a:HEA603 4.3 21.5 1.0
CG a:HIS61 4.4 25.4 1.0
CE1 a:PHE377 4.8 44.8 1.0

Iron binding site 7 out of 8 in 7o3e

Go back to Iron Binding Sites List in 7o3e
Iron binding site 7 out of 8 in the Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe604

b:27.6
occ:1.00
FE a:HEA604 0.0 27.6 1.0
NC a:HEA604 2.0 32.4 1.0
NA a:HEA604 2.0 15.5 1.0
ND a:HEA604 2.0 23.0 1.0
NB a:HEA604 2.0 31.6 1.0
NE2 a:HIS376 2.5 13.8 1.0
C1B a:HEA604 3.0 33.9 1.0
C1C a:HEA604 3.0 28.2 1.0
C1A a:HEA604 3.0 13.1 1.0
C4A a:HEA604 3.0 15.3 1.0
C4C a:HEA604 3.0 36.1 1.0
C1D a:HEA604 3.0 32.4 1.0
C4D a:HEA604 3.0 16.4 1.0
C4B a:HEA604 3.0 25.2 1.0
CE1 a:HIS376 3.3 13.1 1.0
CHB a:HEA604 3.4 25.0 1.0
CHA a:HEA604 3.4 13.0 1.0
CHC a:HEA604 3.4 21.9 1.0
CHD a:HEA604 3.4 42.4 1.0
CD2 a:HIS376 3.5 14.1 1.0
CU a:CU601 4.1 37.4 1.0
C3A a:HEA604 4.3 13.0 1.0
C3C a:HEA604 4.3 33.2 1.0
C2D a:HEA604 4.3 28.1 1.0
C2B a:HEA604 4.3 32.9 1.0
C2C a:HEA604 4.3 31.4 1.0
C2A a:HEA604 4.3 13.3 1.0
C3D a:HEA604 4.3 22.1 1.0
C3B a:HEA604 4.3 41.1 1.0
ND1 a:HIS376 4.5 11.7 1.0
CE1 a:HIS240 4.6 54.8 1.0
CG a:HIS376 4.6 12.8 1.0
ND1 a:HIS240 4.8 40.1 1.0
CE1 a:HIS291 4.9 22.8 1.0
NE2 a:HIS290 5.0 36.8 1.0

Iron binding site 8 out of 8 in 7o3e

Go back to Iron Binding Sites List in 7o3e
Iron binding site 8 out of 8 in the Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Murine Supercomplex CIII2CIV in the Intermediate Locked Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Fe302

b:106.1
occ:1.00
FE O:HEC302 0.0 106.1 1.0
NA O:HEC302 2.0 107.4 1.0
NE2 O:HIS41 2.0 96.5 1.0
ND O:HEC302 2.0 107.7 1.0
NC O:HEC302 2.1 103.0 1.0
NB O:HEC302 2.1 111.4 1.0
SD O:MET160 2.5 96.8 1.0
CE1 O:HIS41 2.9 99.4 1.0
C1A O:HEC302 3.0 110.0 1.0
C4A O:HEC302 3.0 102.4 1.0
C4D O:HEC302 3.0 112.5 1.0
C1D O:HEC302 3.0 102.7 1.0
C4C O:HEC302 3.1 104.5 1.0
C1B O:HEC302 3.1 116.3 1.0
CD2 O:HIS41 3.1 93.4 1.0
CE O:MET160 3.1 82.5 1.0
C4B O:HEC302 3.2 110.9 1.0
C1C O:HEC302 3.2 107.8 1.0
CHA O:HEC302 3.4 114.4 1.0
CHD O:HEC302 3.4 96.9 1.0
CHB O:HEC302 3.4 104.6 1.0
CG O:MET160 3.5 99.3 1.0
CHC O:HEC302 3.6 106.6 1.0
ND1 O:HIS41 4.1 98.3 1.0
CG O:HIS41 4.2 96.9 1.0
C2A O:HEC302 4.2 103.8 1.0
C3A O:HEC302 4.2 103.7 1.0
C2D O:HEC302 4.3 119.4 1.0
C3D O:HEC302 4.3 113.2 1.0
C3C O:HEC302 4.3 116.0 1.0
C2B O:HEC302 4.3 124.2 1.0
C2C O:HEC302 4.4 109.7 1.0
C3B O:HEC302 4.4 113.8 1.0
CB O:MET160 4.9 97.6 1.0

Reference:

I.Vercellino, L.A.Sazanov. Structure and Assembly of the Mammalian Mitochondrial Supercomplex CIII2CIV Nature 2021.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-021-03927-Z
Page generated: Fri Nov 5 14:04:07 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy