Atomistry » Iron » PDB 7o4i-7oq6 » 7ok0
Atomistry »
  Iron »
    PDB 7o4i-7oq6 »
      7ok0 »

Iron in PDB 7ok0: Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A

Enzymatic activity of Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A

All present enzymatic activity of Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A:
2.7.7.6;

Other elements in 7ok0:

The structure of Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 6 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A (pdb code 7ok0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A, PDB code: 7ok0:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in 7ok0

Go back to Iron Binding Sites List in 7ok0
Iron binding site 1 out of 3 in the Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe301

b:73.8
occ:1.00
FE1 D:F3S301 0.0 73.8 1.0
S3 D:F3S301 2.2 73.8 1.0
S1 D:F3S301 2.2 73.8 1.0
S2 D:F3S301 2.2 73.8 1.0
SG D:CYS209 2.3 73.3 1.0
FE3 D:F3S301 3.1 73.8 1.0
FE4 D:F3S301 3.1 73.8 1.0
CB D:CYS209 3.4 73.3 1.0
SG D:CYS206 3.5 62.1 1.0
N D:CYS209 3.5 73.3 1.0
N D:GLU208 3.9 69.5 1.0
N D:GLU207 4.0 68.0 1.0
CA D:CYS209 4.1 73.3 1.0
S4 D:F3S301 4.2 73.8 1.0
SG D:CYS203 4.2 61.1 1.0
CA D:GLU207 4.3 68.0 1.0
CD1 D:ILE219 4.3 73.7 1.0
C D:GLU207 4.5 68.0 1.0
CG1 D:ILE219 4.6 73.7 1.0
C D:GLU208 4.6 69.5 1.0
CA D:GLU208 4.7 69.5 1.0
CE2 D:PHE188 4.8 74.7 1.0
C D:CYS206 5.0 62.1 1.0

Iron binding site 2 out of 3 in 7ok0

Go back to Iron Binding Sites List in 7ok0
Iron binding site 2 out of 3 in the Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe301

b:73.8
occ:1.00
FE3 D:F3S301 0.0 73.8 1.0
S3 D:F3S301 2.2 73.8 1.0
S1 D:F3S301 2.2 73.8 1.0
S4 D:F3S301 2.2 73.8 1.0
SG D:CYS203 2.3 61.1 1.0
SG D:CYS206 2.3 62.1 1.0
FE4 D:F3S301 3.0 73.8 1.0
FE1 D:F3S301 3.1 73.8 1.0
N D:CYS206 3.4 62.1 1.0
CB D:CYS206 3.7 62.1 1.0
CB D:CYS203 3.9 61.1 1.0
N D:ILE204 4.0 55.9 1.0
N D:LEU205 4.0 56.5 1.0
CA D:CYS206 4.1 62.1 1.0
CA D:CYS203 4.2 61.1 1.0
S2 D:F3S301 4.2 73.8 1.0
N D:GLU207 4.3 68.0 1.0
C D:LEU205 4.4 56.5 1.0
CA D:LEU205 4.4 56.5 1.0
C D:CYS203 4.5 61.1 1.0
SG D:CYS183 4.6 67.4 1.0
C D:ILE204 4.7 55.9 1.0
C D:CYS206 4.7 62.1 1.0
CG1 D:ILE204 4.7 55.9 1.0
CA D:ILE204 4.9 55.9 1.0

Iron binding site 3 out of 3 in 7ok0

Go back to Iron Binding Sites List in 7ok0
Iron binding site 3 out of 3 in the Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of the Sulfolobus Acidocaldarius Rna Polymerase at 2.88 A within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe301

b:73.8
occ:1.00
FE4 D:F3S301 0.0 73.8 1.0
S3 D:F3S301 2.2 73.8 1.0
S2 D:F3S301 2.2 73.8 1.0
S4 D:F3S301 2.2 73.8 1.0
SG D:CYS183 2.3 67.4 1.0
CB D:CYS183 2.5 67.4 1.0
FE3 D:F3S301 3.0 73.8 1.0
CA D:CYS183 3.0 67.4 1.0
FE1 D:F3S301 3.1 73.8 1.0
SG D:CYS206 3.4 62.1 1.0
CD D:PRO184 4.0 62.0 1.0
C D:CYS183 4.0 67.4 1.0
N D:CYS183 4.2 67.4 1.0
S1 D:F3S301 4.2 73.8 1.0
N D:PRO184 4.2 62.0 1.0
SG D:CYS203 4.5 61.1 1.0
CE2 D:PHE188 4.5 74.7 1.0
SG D:CYS209 4.8 73.3 1.0
O D:CYS183 4.9 67.4 1.0
N D:GLU185 4.9 64.5 1.0
CG2 D:VAL187 5.0 71.1 1.0
CB D:CYS209 5.0 73.3 1.0
CD2 D:PHE188 5.0 74.7 1.0

Reference:

S.Pilotto, T.Fouqueau, N.Lukoyanova, C.Sheppard, S.Lucas-Staat, L.M.Diaz-Santin, D.Matelska, D.Prangishvili, A.C.M.Cheung, F.Werner. Structural Basis of Rna Polymerase Inhibition By Viral and Host Factors Nat Commun 2021.
ISSN: ESSN 2041-1723
Page generated: Thu Aug 8 14:23:42 2024

Last articles

Zn in 1MC5
Zn in 1MFM
Zn in 1MA0
Zn in 1MED
Zn in 1MEA
Zn in 1MBX
Zn in 1MA3
Zn in 1M9O
Zn in 1M9R
Zn in 1M9Q
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy