Iron in PDB 7oy2: High Resolution Structure of Cytochrome Bd-II Oxidase From E. Coli
Enzymatic activity of High Resolution Structure of Cytochrome Bd-II Oxidase From E. Coli
All present enzymatic activity of High Resolution Structure of Cytochrome Bd-II Oxidase From E. Coli:
1.10.3.10;
7.1.1.3;
Iron Binding Sites:
The binding sites of Iron atom in the High Resolution Structure of Cytochrome Bd-II Oxidase From E. Coli
(pdb code 7oy2). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the
High Resolution Structure of Cytochrome Bd-II Oxidase From E. Coli, PDB code: 7oy2:
Jump to Iron binding site number:
1;
2;
3;
Iron binding site 1 out
of 3 in 7oy2
Go back to
Iron Binding Sites List in 7oy2
Iron binding site 1 out
of 3 in the High Resolution Structure of Cytochrome Bd-II Oxidase From E. Coli
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of High Resolution Structure of Cytochrome Bd-II Oxidase From E. Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe602
b:8.9
occ:1.00
|
FE
|
C:HEB602
|
0.0
|
8.9
|
1.0
|
OE1
|
C:GLU445
|
1.9
|
5.6
|
1.0
|
NA
|
C:HEB602
|
2.1
|
8.9
|
1.0
|
NB
|
C:HEB602
|
2.1
|
8.9
|
1.0
|
NC
|
C:HEB602
|
2.2
|
8.9
|
1.0
|
ND
|
C:HEB602
|
2.3
|
8.9
|
1.0
|
CD
|
C:GLU445
|
3.1
|
5.6
|
1.0
|
C1A
|
C:HEB602
|
3.2
|
8.9
|
1.0
|
C1B
|
C:HEB602
|
3.2
|
8.9
|
1.0
|
C4B
|
C:HEB602
|
3.2
|
8.9
|
1.0
|
C4A
|
C:HEB602
|
3.2
|
8.9
|
1.0
|
C1C
|
C:HEB602
|
3.2
|
8.9
|
1.0
|
C4C
|
C:HEB602
|
3.3
|
8.9
|
1.0
|
C1D
|
C:HEB602
|
3.4
|
8.9
|
1.0
|
C4D
|
C:HEB602
|
3.4
|
8.9
|
1.0
|
CE1
|
C:PHE12
|
3.4
|
8.9
|
1.0
|
CHB
|
C:HEB602
|
3.7
|
8.9
|
1.0
|
CHC
|
C:HEB602
|
3.7
|
8.9
|
1.0
|
CD1
|
C:PHE12
|
3.7
|
8.9
|
1.0
|
CG
|
C:GLU445
|
3.7
|
5.6
|
1.0
|
CHA
|
C:HEB602
|
3.7
|
8.9
|
1.0
|
CHD
|
C:HEB602
|
3.8
|
8.9
|
1.0
|
NH2
|
C:ARG448
|
4.0
|
7.2
|
1.0
|
OE2
|
C:GLU445
|
4.1
|
5.6
|
1.0
|
C2B
|
C:HEB602
|
4.2
|
8.9
|
1.0
|
C2A
|
C:HEB602
|
4.2
|
8.9
|
1.0
|
C2C
|
C:HEB602
|
4.2
|
8.9
|
1.0
|
C3B
|
C:HEB602
|
4.3
|
8.9
|
1.0
|
C3A
|
C:HEB602
|
4.3
|
8.9
|
1.0
|
CB
|
C:GLU445
|
4.3
|
5.6
|
1.0
|
CB
|
C:ALA16
|
4.3
|
7.1
|
1.0
|
C3C
|
C:HEB602
|
4.4
|
8.9
|
1.0
|
C2D
|
C:HEB602
|
4.4
|
8.9
|
1.0
|
C3D
|
C:HEB602
|
4.6
|
8.9
|
1.0
|
CZ
|
C:PHE12
|
4.6
|
8.9
|
1.0
|
ND2
|
C:ASN148
|
4.9
|
3.5
|
1.0
|
CG
|
C:PHE12
|
5.0
|
8.9
|
1.0
|
|
Iron binding site 2 out
of 3 in 7oy2
Go back to
Iron Binding Sites List in 7oy2
Iron binding site 2 out
of 3 in the High Resolution Structure of Cytochrome Bd-II Oxidase From E. Coli
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of High Resolution Structure of Cytochrome Bd-II Oxidase From E. Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe603
b:8.9
occ:1.00
|
FE
|
C:HEB603
|
0.0
|
8.9
|
1.0
|
NA
|
C:HEB603
|
2.1
|
8.9
|
1.0
|
NB
|
C:HEB603
|
2.2
|
8.9
|
1.0
|
NC
|
C:HEB603
|
2.2
|
8.9
|
1.0
|
SD
|
C:MET393
|
2.3
|
10.2
|
1.0
|
NE2
|
C:HIS186
|
2.3
|
4.0
|
1.0
|
ND
|
C:HEB603
|
2.3
|
8.9
|
1.0
|
CD2
|
C:HIS186
|
3.1
|
4.0
|
1.0
|
C1A
|
C:HEB603
|
3.2
|
8.9
|
1.0
|
C1C
|
C:HEB603
|
3.2
|
8.9
|
1.0
|
C1B
|
C:HEB603
|
3.2
|
8.9
|
1.0
|
C4A
|
C:HEB603
|
3.3
|
8.9
|
1.0
|
C4B
|
C:HEB603
|
3.3
|
8.9
|
1.0
|
C4C
|
C:HEB603
|
3.3
|
8.9
|
1.0
|
C4D
|
C:HEB603
|
3.3
|
8.9
|
1.0
|
CG
|
C:MET393
|
3.4
|
10.2
|
1.0
|
C1D
|
C:HEB603
|
3.4
|
8.9
|
1.0
|
CE1
|
C:HIS186
|
3.4
|
4.0
|
1.0
|
CE
|
C:MET393
|
3.5
|
10.2
|
1.0
|
CHC
|
C:HEB603
|
3.7
|
8.9
|
1.0
|
CHB
|
C:HEB603
|
3.7
|
8.9
|
1.0
|
CHA
|
C:HEB603
|
3.7
|
8.9
|
1.0
|
CHD
|
C:HEB603
|
3.8
|
8.9
|
1.0
|
C2A
|
C:HEB603
|
4.2
|
8.9
|
1.0
|
C2C
|
C:HEB603
|
4.2
|
8.9
|
1.0
|
C2B
|
C:HEB603
|
4.2
|
8.9
|
1.0
|
C3A
|
C:HEB603
|
4.3
|
8.9
|
1.0
|
C3B
|
C:HEB603
|
4.3
|
8.9
|
1.0
|
CG
|
C:HIS186
|
4.3
|
4.0
|
1.0
|
C3C
|
C:HEB603
|
4.3
|
8.9
|
1.0
|
C2D
|
C:HEB603
|
4.4
|
8.9
|
1.0
|
ND1
|
C:HIS186
|
4.4
|
4.0
|
1.0
|
C3D
|
C:HEB603
|
4.5
|
8.9
|
1.0
|
CB
|
C:MET393
|
4.8
|
10.2
|
1.0
|
CA
|
C:GLY238
|
4.9
|
7.1
|
1.0
|
CA
|
C:GLY440
|
5.0
|
5.9
|
1.0
|
|
Iron binding site 3 out
of 3 in 7oy2
Go back to
Iron Binding Sites List in 7oy2
Iron binding site 3 out
of 3 in the High Resolution Structure of Cytochrome Bd-II Oxidase From E. Coli
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of High Resolution Structure of Cytochrome Bd-II Oxidase From E. Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe604
b:8.9
occ:1.00
|
FE
|
C:HDD604
|
0.0
|
8.9
|
1.0
|
ND
|
C:HDD604
|
1.8
|
8.9
|
1.0
|
NA
|
C:HDD604
|
2.1
|
8.9
|
1.0
|
NC
|
C:HDD604
|
2.1
|
8.9
|
1.0
|
NB
|
C:HDD604
|
2.1
|
8.9
|
1.0
|
NE2
|
C:HIS19
|
2.5
|
8.9
|
1.0
|
O2
|
C:OXY605
|
2.7
|
9.6
|
1.0
|
C4D
|
C:HDD604
|
2.8
|
8.9
|
1.0
|
C1D
|
C:HDD604
|
2.8
|
8.9
|
1.0
|
C4C
|
C:HDD604
|
3.0
|
8.9
|
1.0
|
C1A
|
C:HDD604
|
3.0
|
8.9
|
1.0
|
C1B
|
C:HDD604
|
3.1
|
8.9
|
1.0
|
C4B
|
C:HDD604
|
3.1
|
8.9
|
1.0
|
C1C
|
C:HDD604
|
3.1
|
8.9
|
1.0
|
C4A
|
C:HDD604
|
3.1
|
8.9
|
1.0
|
O1
|
C:OXY605
|
3.2
|
9.6
|
1.0
|
CHA
|
C:HDD604
|
3.3
|
8.9
|
1.0
|
CHD
|
C:HDD604
|
3.3
|
8.9
|
1.0
|
CD2
|
C:HIS19
|
3.4
|
8.9
|
1.0
|
CHC
|
C:HDD604
|
3.4
|
8.9
|
1.0
|
CE1
|
C:HIS19
|
3.4
|
8.9
|
1.0
|
CHB
|
C:HDD604
|
3.5
|
8.9
|
1.0
|
C3D
|
C:HDD604
|
4.1
|
8.9
|
1.0
|
C2D
|
C:HDD604
|
4.1
|
8.9
|
1.0
|
C3C
|
C:HDD604
|
4.3
|
8.9
|
1.0
|
C2A
|
C:HDD604
|
4.3
|
8.9
|
1.0
|
C2B
|
C:HDD604
|
4.4
|
8.9
|
1.0
|
C3B
|
C:HDD604
|
4.4
|
8.9
|
1.0
|
CZ
|
C:PHE104
|
4.4
|
4.6
|
1.0
|
C3A
|
C:HDD604
|
4.4
|
8.9
|
1.0
|
C2C
|
C:HDD604
|
4.4
|
8.9
|
1.0
|
CG2
|
C:VAL23
|
4.5
|
4.2
|
1.0
|
CG
|
C:HIS19
|
4.5
|
8.9
|
1.0
|
ND1
|
C:HIS19
|
4.5
|
8.9
|
1.0
|
CA
|
C:GLY70
|
4.6
|
3.6
|
1.0
|
OND
|
C:HDD604
|
4.7
|
8.9
|
1.0
|
CE1
|
C:PHE104
|
4.7
|
4.6
|
1.0
|
CAD
|
C:HDD604
|
4.8
|
8.9
|
1.0
|
|
Reference:
T.N.Grund,
M.Radloff,
D.Wu,
H.G.Goojani,
L.F.Witte,
W.Josting,
S.Buschmann,
H.Muller,
I.Elamri,
S.Welsch,
H.Schwalbe,
H.Michel,
D.Bald,
S.Safarian.
Mechanistic and Structural Diversity Between Cytochrome Bd Isoforms of Escherichia Coli . Proc.Natl.Acad.Sci.Usa V. 118 2021.
ISSN: ESSN 1091-6490
PubMed: 34873041
DOI: 10.1073/PNAS.2114013118
Page generated: Thu Aug 8 14:51:01 2024
|