Iron in PDB 7p5h: Tmhydabc- D2 Map
Enzymatic activity of Tmhydabc- D2 Map
All present enzymatic activity of Tmhydabc- D2 Map:
1.12.1.4;
Other elements in 7p5h:
The structure of Tmhydabc- D2 Map also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
104;
Binding sites:
The binding sites of Iron atom in the Tmhydabc- D2 Map
(pdb code 7p5h). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 104 binding sites of Iron where determined in the
Tmhydabc- D2 Map, PDB code: 7p5h:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 104 in 7p5h
Go back to
Iron Binding Sites List in 7p5h
Iron binding site 1 out
of 104 in the Tmhydabc- D2 Map
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Tmhydabc- D2 Map within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe701
b:18.5
occ:1.00
|
FE1
|
A:SF4701
|
0.0
|
18.5
|
1.0
|
SG
|
A:CYS350
|
2.3
|
18.5
|
1.0
|
S3
|
A:SF4701
|
2.3
|
18.5
|
1.0
|
S4
|
A:SF4701
|
2.3
|
18.5
|
1.0
|
S2
|
A:SF4701
|
2.3
|
18.5
|
1.0
|
HB2
|
A:CYS350
|
2.5
|
18.5
|
1.0
|
FE2
|
A:SF4701
|
2.7
|
18.5
|
1.0
|
FE4
|
A:SF4701
|
2.7
|
18.5
|
1.0
|
FE3
|
A:SF4701
|
2.7
|
18.5
|
1.0
|
CB
|
A:CYS350
|
2.9
|
18.5
|
1.0
|
HB3
|
A:CYS350
|
3.5
|
18.5
|
1.0
|
O
|
A:HOH845
|
3.6
|
8.2
|
1.0
|
HB3
|
A:ALA352
|
3.7
|
18.5
|
1.0
|
HD2
|
A:PRO296
|
3.8
|
18.5
|
1.0
|
S1
|
A:SF4701
|
3.9
|
18.5
|
1.0
|
HA
|
A:CYS350
|
3.9
|
18.5
|
1.0
|
CA
|
A:CYS350
|
4.0
|
18.5
|
1.0
|
HG2
|
A:LYS353
|
4.1
|
18.5
|
1.0
|
HE2
|
A:LYS353
|
4.1
|
18.5
|
1.0
|
O
|
A:HOH934
|
4.2
|
16.6
|
1.0
|
H
|
A:ALA352
|
4.3
|
18.5
|
1.0
|
HG2
|
A:PRO296
|
4.5
|
18.5
|
1.0
|
CB
|
A:ALA352
|
4.6
|
18.5
|
1.0
|
CD
|
A:PRO296
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS486
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS482
|
4.7
|
18.5
|
1.0
|
HB2
|
A:ALA352
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS295
|
4.7
|
18.5
|
1.0
|
H
|
A:ALA297
|
4.8
|
18.5
|
1.0
|
H
|
A:LYS353
|
4.8
|
18.5
|
1.0
|
HA
|
A:CYS486
|
4.8
|
18.5
|
1.0
|
HG2
|
A:PRO349
|
4.9
|
18.5
|
1.0
|
HG3
|
A:LYS353
|
4.9
|
18.5
|
1.0
|
HA
|
A:CYS295
|
4.9
|
18.5
|
1.0
|
HA3
|
A:GLY489
|
4.9
|
18.5
|
1.0
|
HA2
|
A:GLY489
|
4.9
|
18.5
|
1.0
|
C
|
A:CYS350
|
4.9
|
18.5
|
1.0
|
CG
|
A:LYS353
|
4.9
|
18.5
|
1.0
|
HB2
|
A:ALA297
|
5.0
|
18.5
|
1.0
|
|
Iron binding site 2 out
of 104 in 7p5h
Go back to
Iron Binding Sites List in 7p5h
Iron binding site 2 out
of 104 in the Tmhydabc- D2 Map
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Tmhydabc- D2 Map within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe701
b:18.5
occ:1.00
|
FE2
|
A:SF4701
|
0.0
|
18.5
|
1.0
|
SG
|
A:CYS295
|
2.3
|
18.5
|
1.0
|
S1
|
A:SF4701
|
2.3
|
18.5
|
1.0
|
S4
|
A:SF4701
|
2.3
|
18.5
|
1.0
|
S3
|
A:SF4701
|
2.3
|
18.5
|
1.0
|
FE4
|
A:SF4701
|
2.7
|
18.5
|
1.0
|
FE1
|
A:SF4701
|
2.7
|
18.5
|
1.0
|
FE3
|
A:SF4701
|
2.7
|
18.5
|
1.0
|
HE3
|
A:MET480
|
3.2
|
16.1
|
1.0
|
H
|
A:ALA481
|
3.2
|
18.5
|
1.0
|
HB2
|
A:CYS295
|
3.4
|
18.5
|
1.0
|
CB
|
A:CYS295
|
3.4
|
18.5
|
1.0
|
HB3
|
A:ALA481
|
3.4
|
18.5
|
1.0
|
HA
|
A:CYS295
|
3.5
|
18.5
|
1.0
|
HD2
|
A:PRO296
|
3.6
|
18.5
|
1.0
|
HB3
|
A:ALA297
|
3.8
|
18.5
|
1.0
|
S2
|
A:SF4701
|
3.9
|
18.5
|
1.0
|
CA
|
A:CYS295
|
3.9
|
18.5
|
1.0
|
N
|
A:ALA481
|
4.0
|
18.5
|
1.0
|
H
|
A:ALA297
|
4.0
|
18.5
|
1.0
|
CE
|
A:MET480
|
4.1
|
16.1
|
1.0
|
H
|
A:CYS482
|
4.1
|
18.5
|
1.0
|
HA
|
A:MET480
|
4.2
|
16.1
|
1.0
|
CB
|
A:ALA481
|
4.2
|
18.5
|
1.0
|
HB3
|
A:CYS295
|
4.2
|
18.5
|
1.0
|
HB2
|
A:ALA481
|
4.2
|
18.5
|
1.0
|
HE2
|
A:MET480
|
4.3
|
16.1
|
1.0
|
HE1
|
A:MET480
|
4.5
|
16.1
|
1.0
|
CD
|
A:PRO296
|
4.5
|
18.5
|
1.0
|
HB3
|
A:MET480
|
4.5
|
16.1
|
1.0
|
C
|
A:CYS295
|
4.5
|
18.5
|
1.0
|
HB2
|
A:ALA297
|
4.6
|
18.5
|
1.0
|
CB
|
A:ALA297
|
4.6
|
18.5
|
1.0
|
CA
|
A:ALA481
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS482
|
4.7
|
18.5
|
1.0
|
H
|
A:TRP298
|
4.7
|
18.5
|
1.0
|
N
|
A:PRO296
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS486
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS350
|
4.7
|
18.5
|
1.0
|
N
|
A:CYS482
|
4.8
|
18.5
|
1.0
|
N
|
A:ALA297
|
4.8
|
18.5
|
1.0
|
CA
|
A:MET480
|
4.9
|
16.1
|
1.0
|
HB3
|
A:ALA352
|
4.9
|
18.5
|
1.0
|
C
|
A:MET480
|
4.9
|
16.1
|
1.0
|
HD3
|
A:PRO296
|
5.0
|
18.5
|
1.0
|
HB1
|
A:ALA481
|
5.0
|
18.5
|
1.0
|
|
Iron binding site 3 out
of 104 in 7p5h
Go back to
Iron Binding Sites List in 7p5h
Iron binding site 3 out
of 104 in the Tmhydabc- D2 Map
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Tmhydabc- D2 Map within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe701
b:18.5
occ:1.00
|
FE3
|
A:SF4701
|
0.0
|
18.5
|
1.0
|
SG
|
A:CYS486
|
2.3
|
18.5
|
1.0
|
S4
|
A:SF4701
|
2.3
|
18.5
|
1.0
|
S1
|
A:SF4701
|
2.3
|
18.5
|
1.0
|
S2
|
A:SF4701
|
2.3
|
18.5
|
1.0
|
FE2
|
A:SF4701
|
2.7
|
18.5
|
1.0
|
FE1
|
A:SF4701
|
2.7
|
18.5
|
1.0
|
FE4
|
A:SF4701
|
2.7
|
18.5
|
1.0
|
HA
|
A:CYS486
|
2.8
|
18.5
|
1.0
|
CB
|
A:CYS486
|
3.3
|
18.5
|
1.0
|
HE3
|
A:MET480
|
3.3
|
16.1
|
1.0
|
CA
|
A:CYS486
|
3.4
|
18.5
|
1.0
|
HB3
|
A:CYS486
|
3.5
|
18.5
|
1.0
|
HE2
|
A:MET480
|
3.5
|
16.1
|
1.0
|
O
|
A:HOH934
|
3.6
|
16.6
|
1.0
|
CE
|
A:MET480
|
3.7
|
16.1
|
1.0
|
HE1
|
A:MET480
|
3.8
|
16.1
|
1.0
|
N
|
A:CYS486
|
3.8
|
18.5
|
1.0
|
S3
|
A:SF4701
|
3.9
|
18.5
|
1.0
|
HB2
|
A:CYS350
|
4.0
|
18.5
|
1.0
|
H
|
A:CYS486
|
4.1
|
18.5
|
1.0
|
HB2
|
A:CYS486
|
4.1
|
18.5
|
1.0
|
C
|
A:GLY485
|
4.4
|
18.5
|
1.0
|
HG2
|
A:PRO349
|
4.5
|
18.5
|
1.0
|
HB2
|
A:CYS482
|
4.6
|
18.5
|
1.0
|
HB3
|
A:MET480
|
4.7
|
16.1
|
1.0
|
O
|
A:GLY485
|
4.7
|
18.5
|
1.0
|
O
|
A:HOH885
|
4.7
|
23.9
|
1.0
|
C
|
A:CYS486
|
4.8
|
18.5
|
1.0
|
CB
|
A:CYS350
|
4.8
|
18.5
|
1.0
|
HA2
|
A:GLY485
|
4.8
|
18.5
|
1.0
|
SG
|
A:CYS295
|
4.8
|
18.5
|
1.0
|
H
|
A:CYS482
|
4.8
|
18.5
|
1.0
|
SG
|
A:CYS482
|
4.9
|
18.5
|
1.0
|
SG
|
A:CYS350
|
4.9
|
18.5
|
1.0
|
HA2
|
A:GLY489
|
4.9
|
18.5
|
1.0
|
HA
|
A:CYS295
|
4.9
|
18.5
|
1.0
|
HA3
|
A:GLY489
|
4.9
|
18.5
|
1.0
|
O
|
A:HOH812
|
4.9
|
14.2
|
1.0
|
HB2
|
A:CYS295
|
4.9
|
18.5
|
1.0
|
|
Iron binding site 4 out
of 104 in 7p5h
Go back to
Iron Binding Sites List in 7p5h
Iron binding site 4 out
of 104 in the Tmhydabc- D2 Map
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Tmhydabc- D2 Map within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe701
b:18.5
occ:1.00
|
FE4
|
A:SF4701
|
0.0
|
18.5
|
1.0
|
SG
|
A:CYS482
|
2.3
|
18.5
|
1.0
|
S2
|
A:SF4701
|
2.3
|
18.5
|
1.0
|
S3
|
A:SF4701
|
2.3
|
18.5
|
1.0
|
S1
|
A:SF4701
|
2.3
|
18.5
|
1.0
|
FE2
|
A:SF4701
|
2.7
|
18.5
|
1.0
|
FE1
|
A:SF4701
|
2.7
|
18.5
|
1.0
|
FE3
|
A:SF4701
|
2.7
|
18.5
|
1.0
|
HB2
|
A:CYS482
|
3.1
|
18.5
|
1.0
|
H
|
A:CYS482
|
3.2
|
18.5
|
1.0
|
CB
|
A:CYS482
|
3.3
|
18.5
|
1.0
|
HA2
|
A:GLY489
|
3.4
|
18.5
|
1.0
|
HB3
|
A:ALA481
|
3.6
|
18.5
|
1.0
|
N
|
A:CYS482
|
3.8
|
18.5
|
1.0
|
O
|
A:HOH845
|
3.8
|
8.2
|
1.0
|
HA
|
A:CYS486
|
3.8
|
18.5
|
1.0
|
S4
|
A:SF4701
|
3.9
|
18.5
|
1.0
|
HB3
|
A:CYS482
|
4.0
|
18.5
|
1.0
|
CA
|
A:CYS482
|
4.2
|
18.5
|
1.0
|
HA3
|
A:GLY489
|
4.2
|
18.5
|
1.0
|
CA
|
A:GLY489
|
4.3
|
18.5
|
1.0
|
H
|
A:ALA481
|
4.3
|
18.5
|
1.0
|
H
|
A:GLY490
|
4.4
|
15.4
|
1.0
|
HB2
|
A:CYS350
|
4.5
|
18.5
|
1.0
|
CB
|
A:ALA481
|
4.5
|
18.5
|
1.0
|
O
|
A:GLY485
|
4.6
|
18.5
|
1.0
|
SG
|
A:CYS350
|
4.7
|
18.5
|
1.0
|
C
|
A:ALA481
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS295
|
4.7
|
18.5
|
1.0
|
HA
|
A:CYS482
|
4.7
|
18.5
|
1.0
|
N
|
A:ALA481
|
4.7
|
18.5
|
1.0
|
CA
|
A:CYS486
|
4.8
|
18.5
|
1.0
|
HE21
|
A:GLN191
|
4.8
|
18.5
|
1.0
|
HB2
|
A:CYS189
|
4.8
|
18.5
|
1.0
|
HE3
|
A:MET480
|
4.9
|
16.1
|
1.0
|
CA
|
A:ALA481
|
4.9
|
18.5
|
1.0
|
SG
|
A:CYS486
|
4.9
|
18.5
|
1.0
|
C
|
A:GLY485
|
5.0
|
18.5
|
1.0
|
HB3
|
A:ALA297
|
5.0
|
18.5
|
1.0
|
HB1
|
A:ALA481
|
5.0
|
18.5
|
1.0
|
N
|
A:GLY489
|
5.0
|
18.5
|
1.0
|
|
Iron binding site 5 out
of 104 in 7p5h
Go back to
Iron Binding Sites List in 7p5h
Iron binding site 5 out
of 104 in the Tmhydabc- D2 Map
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Tmhydabc- D2 Map within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe702
b:18.5
occ:1.00
|
FE1
|
A:SF4702
|
0.0
|
18.5
|
1.0
|
SG
|
A:CYS192
|
2.3
|
18.5
|
1.0
|
S2
|
A:SF4702
|
2.3
|
18.5
|
1.0
|
S4
|
A:SF4702
|
2.3
|
18.5
|
1.0
|
S3
|
A:SF4702
|
2.3
|
18.5
|
1.0
|
FE2
|
A:SF4702
|
2.7
|
18.5
|
1.0
|
FE4
|
A:SF4702
|
2.7
|
18.5
|
1.0
|
FE3
|
A:SF4702
|
2.7
|
18.5
|
1.0
|
HB3
|
A:CYS192
|
3.0
|
18.5
|
1.0
|
H
|
A:CYS192
|
3.2
|
18.5
|
1.0
|
CB
|
A:CYS192
|
3.2
|
18.5
|
1.0
|
O
|
A:HOH935
|
3.8
|
14.1
|
1.0
|
S1
|
A:SF4702
|
3.9
|
18.5
|
1.0
|
H
|
A:GLY190
|
3.9
|
18.5
|
1.0
|
HD13
|
A:ILE162
|
3.9
|
16.5
|
1.0
|
HB2
|
A:CYS192
|
3.9
|
18.5
|
1.0
|
N
|
A:CYS192
|
3.9
|
18.5
|
1.0
|
HG11
|
A:VAL136
|
4.1
|
15.6
|
1.0
|
CA
|
A:CYS192
|
4.2
|
18.5
|
1.0
|
HA2
|
A:GLY190
|
4.3
|
18.5
|
1.0
|
H
|
A:GLN191
|
4.4
|
18.5
|
1.0
|
HG21
|
A:VAL136
|
4.4
|
15.6
|
1.0
|
HB2
|
A:CYS153
|
4.4
|
18.5
|
1.0
|
H
|
A:VAL193
|
4.5
|
18.5
|
1.0
|
N
|
A:GLY190
|
4.6
|
18.5
|
1.0
|
SG
|
A:CYS189
|
4.6
|
18.5
|
1.0
|
N
|
A:GLN191
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS186
|
4.7
|
18.5
|
1.0
|
HD11
|
A:ILE162
|
4.7
|
16.5
|
1.0
|
HD21
|
A:LEU181
|
4.7
|
15.6
|
1.0
|
CD1
|
A:ILE162
|
4.7
|
16.5
|
1.0
|
SG
|
A:CYS153
|
4.8
|
18.5
|
1.0
|
CA
|
A:GLY190
|
4.8
|
18.5
|
1.0
|
HG23
|
A:VAL193
|
4.8
|
18.5
|
1.0
|
HA
|
A:CYS192
|
4.9
|
18.5
|
1.0
|
C
|
A:GLY190
|
4.9
|
18.5
|
1.0
|
|
Iron binding site 6 out
of 104 in 7p5h
Go back to
Iron Binding Sites List in 7p5h
Iron binding site 6 out
of 104 in the Tmhydabc- D2 Map
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Tmhydabc- D2 Map within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe702
b:18.5
occ:1.00
|
FE2
|
A:SF4702
|
0.0
|
18.5
|
1.0
|
SG
|
A:CYS186
|
2.3
|
18.5
|
1.0
|
S1
|
A:SF4702
|
2.3
|
18.5
|
1.0
|
S3
|
A:SF4702
|
2.3
|
18.5
|
1.0
|
S4
|
A:SF4702
|
2.3
|
18.5
|
1.0
|
FE4
|
A:SF4702
|
2.7
|
18.5
|
1.0
|
FE1
|
A:SF4702
|
2.7
|
18.5
|
1.0
|
FE3
|
A:SF4702
|
2.7
|
18.5
|
1.0
|
H
|
A:LEU188
|
3.1
|
18.5
|
1.0
|
HB2
|
A:CYS186
|
3.2
|
18.5
|
1.0
|
CB
|
A:CYS186
|
3.3
|
18.5
|
1.0
|
HA
|
A:CYS186
|
3.5
|
18.5
|
1.0
|
HG11
|
A:VAL161
|
3.6
|
14.5
|
1.0
|
H
|
A:VAL187
|
3.6
|
18.5
|
1.0
|
HA
|
A:LEU188
|
3.8
|
18.5
|
1.0
|
CA
|
A:CYS186
|
3.8
|
18.5
|
1.0
|
N
|
A:LEU188
|
3.9
|
18.5
|
1.0
|
S2
|
A:SF4702
|
3.9
|
18.5
|
1.0
|
HD21
|
A:LEU181
|
3.9
|
15.6
|
1.0
|
N
|
A:VAL187
|
4.0
|
18.5
|
1.0
|
HD11
|
A:LEU181
|
4.0
|
15.6
|
1.0
|
H
|
A:CYS189
|
4.1
|
18.5
|
1.0
|
HB3
|
A:CYS186
|
4.1
|
18.5
|
1.0
|
HG12
|
A:VAL161
|
4.2
|
14.5
|
1.0
|
C
|
A:CYS186
|
4.2
|
18.5
|
1.0
|
CG1
|
A:VAL161
|
4.3
|
14.5
|
1.0
|
CA
|
A:LEU188
|
4.4
|
18.5
|
1.0
|
H
|
A:GLY190
|
4.4
|
18.5
|
1.0
|
HG22
|
A:VAL187
|
4.5
|
18.5
|
1.0
|
HG13
|
A:VAL161
|
4.5
|
14.5
|
1.0
|
HD23
|
A:LEU188
|
4.6
|
18.5
|
1.0
|
N
|
A:CYS189
|
4.7
|
18.5
|
1.0
|
HG21
|
A:VAL136
|
4.8
|
15.6
|
1.0
|
HG23
|
A:VAL187
|
4.8
|
18.5
|
1.0
|
SG
|
A:CYS153
|
4.8
|
18.5
|
1.0
|
SG
|
A:CYS192
|
4.8
|
18.5
|
1.0
|
HG
|
A:LEU181
|
4.8
|
15.6
|
1.0
|
C
|
A:VAL187
|
4.8
|
18.5
|
1.0
|
CD2
|
A:LEU181
|
4.8
|
15.6
|
1.0
|
HG11
|
A:VAL159
|
4.9
|
16.0
|
1.0
|
SG
|
A:CYS189
|
4.9
|
18.5
|
1.0
|
CD1
|
A:LEU181
|
4.9
|
15.6
|
1.0
|
CA
|
A:VAL187
|
5.0
|
18.5
|
1.0
|
|
Iron binding site 7 out
of 104 in 7p5h
Go back to
Iron Binding Sites List in 7p5h
Iron binding site 7 out
of 104 in the Tmhydabc- D2 Map
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Tmhydabc- D2 Map within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe702
b:18.5
occ:1.00
|
FE3
|
A:SF4702
|
0.0
|
18.5
|
1.0
|
S4
|
A:SF4702
|
2.3
|
18.5
|
1.0
|
SG
|
A:CYS189
|
2.3
|
18.5
|
1.0
|
S1
|
A:SF4702
|
2.3
|
18.5
|
1.0
|
S2
|
A:SF4702
|
2.3
|
18.5
|
1.0
|
FE2
|
A:SF4702
|
2.7
|
18.5
|
1.0
|
FE1
|
A:SF4702
|
2.7
|
18.5
|
1.0
|
FE4
|
A:SF4702
|
2.7
|
18.5
|
1.0
|
H
|
A:CYS189
|
3.0
|
18.5
|
1.0
|
H
|
A:GLY190
|
3.3
|
18.5
|
1.0
|
HG3
|
A:GLN157
|
3.5
|
18.5
|
1.0
|
H
|
A:GLN191
|
3.6
|
18.5
|
1.0
|
N
|
A:CYS189
|
3.7
|
18.5
|
1.0
|
CB
|
A:CYS189
|
3.7
|
18.5
|
1.0
|
HG23
|
A:VAL187
|
3.8
|
18.5
|
1.0
|
HG22
|
A:VAL187
|
3.8
|
18.5
|
1.0
|
N
|
A:GLY190
|
3.9
|
18.5
|
1.0
|
S3
|
A:SF4702
|
3.9
|
18.5
|
1.0
|
HB3
|
A:CYS189
|
4.0
|
18.5
|
1.0
|
H
|
A:CYS192
|
4.0
|
18.5
|
1.0
|
HB2
|
A:GLN191
|
4.1
|
18.5
|
1.0
|
CA
|
A:CYS189
|
4.1
|
18.5
|
1.0
|
H
|
A:LEU188
|
4.1
|
18.5
|
1.0
|
CG2
|
A:VAL187
|
4.3
|
18.5
|
1.0
|
H
|
A:VAL187
|
4.3
|
18.5
|
1.0
|
N
|
A:GLN191
|
4.3
|
18.5
|
1.0
|
C
|
A:CYS189
|
4.4
|
18.5
|
1.0
|
HB2
|
A:CYS189
|
4.4
|
18.5
|
1.0
|
CG
|
A:GLN157
|
4.5
|
18.5
|
1.0
|
N
|
A:LEU188
|
4.5
|
18.5
|
1.0
|
HA
|
A:LEU188
|
4.6
|
18.5
|
1.0
|
HB3
|
A:GLN157
|
4.6
|
18.5
|
1.0
|
HE21
|
A:GLN157
|
4.6
|
18.5
|
1.0
|
C
|
A:LEU188
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS186
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS192
|
4.7
|
18.5
|
1.0
|
HG21
|
A:VAL187
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS153
|
4.8
|
18.5
|
1.0
|
CA
|
A:GLY190
|
4.8
|
18.5
|
1.0
|
HB2
|
A:GLN157
|
4.8
|
18.5
|
1.0
|
HG21
|
A:VAL159
|
4.8
|
16.0
|
1.0
|
CA
|
A:LEU188
|
4.8
|
18.5
|
1.0
|
HA2
|
A:GLY190
|
4.8
|
18.5
|
1.0
|
HG2
|
A:GLN157
|
4.9
|
18.5
|
1.0
|
N
|
A:CYS192
|
4.9
|
18.5
|
1.0
|
HA
|
A:CYS153
|
4.9
|
18.5
|
1.0
|
HG2
|
A:GLN191
|
4.9
|
18.5
|
1.0
|
HB3
|
A:CYS192
|
4.9
|
18.5
|
1.0
|
CB
|
A:GLN157
|
4.9
|
18.5
|
1.0
|
CB
|
A:GLN191
|
4.9
|
18.5
|
1.0
|
N
|
A:VAL187
|
4.9
|
18.5
|
1.0
|
|
Iron binding site 8 out
of 104 in 7p5h
Go back to
Iron Binding Sites List in 7p5h
Iron binding site 8 out
of 104 in the Tmhydabc- D2 Map
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Tmhydabc- D2 Map within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe702
b:18.5
occ:1.00
|
FE4
|
A:SF4702
|
0.0
|
18.5
|
1.0
|
S3
|
A:SF4702
|
2.3
|
18.5
|
1.0
|
SG
|
A:CYS153
|
2.3
|
18.5
|
1.0
|
S2
|
A:SF4702
|
2.3
|
18.5
|
1.0
|
S1
|
A:SF4702
|
2.3
|
18.5
|
1.0
|
FE2
|
A:SF4702
|
2.7
|
18.5
|
1.0
|
FE1
|
A:SF4702
|
2.7
|
18.5
|
1.0
|
FE3
|
A:SF4702
|
2.7
|
18.5
|
1.0
|
HB2
|
A:CYS153
|
3.1
|
18.5
|
1.0
|
CB
|
A:CYS153
|
3.3
|
18.5
|
1.0
|
HG12
|
A:VAL161
|
3.4
|
14.5
|
1.0
|
HA
|
A:CYS153
|
3.6
|
18.5
|
1.0
|
HB
|
A:VAL159
|
3.8
|
16.0
|
1.0
|
HG11
|
A:VAL161
|
3.8
|
14.5
|
1.0
|
S4
|
A:SF4702
|
3.9
|
18.5
|
1.0
|
HD13
|
A:ILE162
|
3.9
|
16.5
|
1.0
|
CA
|
A:CYS153
|
4.0
|
18.5
|
1.0
|
HB3
|
A:CYS153
|
4.0
|
18.5
|
1.0
|
CG1
|
A:VAL161
|
4.1
|
14.5
|
1.0
|
HB3
|
A:CYS192
|
4.2
|
18.5
|
1.0
|
H
|
A:VAL161
|
4.3
|
14.5
|
1.0
|
HG12
|
A:ILE162
|
4.4
|
16.5
|
1.0
|
HG11
|
A:VAL159
|
4.5
|
16.0
|
1.0
|
HD11
|
A:ILE162
|
4.6
|
16.5
|
1.0
|
HB2
|
A:GLN157
|
4.6
|
18.5
|
1.0
|
HG3
|
A:GLN157
|
4.6
|
18.5
|
1.0
|
HG13
|
A:VAL161
|
4.6
|
14.5
|
1.0
|
CD1
|
A:ILE162
|
4.6
|
16.5
|
1.0
|
CB
|
A:VAL159
|
4.6
|
16.0
|
1.0
|
HA
|
A:CYS186
|
4.6
|
18.5
|
1.0
|
HG23
|
A:ILE162
|
4.7
|
16.5
|
1.0
|
HG21
|
A:VAL159
|
4.7
|
16.0
|
1.0
|
SG
|
A:CYS192
|
4.8
|
18.5
|
1.0
|
HG12
|
A:VAL159
|
4.8
|
16.0
|
1.0
|
H
|
A:GLY160
|
4.8
|
13.2
|
1.0
|
SG
|
A:CYS189
|
4.8
|
18.5
|
1.0
|
H
|
A:CYS192
|
4.8
|
18.5
|
1.0
|
CG1
|
A:VAL159
|
4.9
|
16.0
|
1.0
|
SG
|
A:CYS186
|
4.9
|
18.5
|
1.0
|
H
|
A:VAL187
|
4.9
|
18.5
|
1.0
|
HB2
|
A:CYS186
|
4.9
|
18.5
|
1.0
|
C
|
A:CYS153
|
5.0
|
18.5
|
1.0
|
CB
|
A:CYS192
|
5.0
|
18.5
|
1.0
|
|
Iron binding site 9 out
of 104 in 7p5h
Go back to
Iron Binding Sites List in 7p5h
Iron binding site 9 out
of 104 in the Tmhydabc- D2 Map
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Tmhydabc- D2 Map within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe703
b:18.5
occ:1.00
|
FE1
|
A:SF4703
|
0.0
|
18.5
|
1.0
|
SG
|
A:CYS196
|
2.3
|
18.5
|
1.0
|
S4
|
A:SF4703
|
2.3
|
18.5
|
1.0
|
S2
|
A:SF4703
|
2.3
|
18.5
|
1.0
|
S3
|
A:SF4703
|
2.3
|
18.5
|
1.0
|
FE4
|
A:SF4703
|
2.7
|
18.5
|
1.0
|
FE2
|
A:SF4703
|
2.7
|
18.5
|
1.0
|
FE3
|
A:SF4703
|
2.7
|
18.5
|
1.0
|
HD2
|
A:PRO197
|
2.9
|
18.5
|
1.0
|
HB3
|
A:ALA200
|
3.2
|
18.5
|
1.0
|
HG1
|
A:THR198
|
3.2
|
18.5
|
1.0
|
CB
|
A:CYS196
|
3.4
|
18.5
|
1.0
|
HB2
|
A:CYS196
|
3.4
|
18.5
|
1.0
|
HA
|
A:CYS196
|
3.5
|
18.5
|
1.0
|
HD12
|
A:LEU201
|
3.5
|
18.5
|
1.0
|
CD
|
A:PRO197
|
3.8
|
18.5
|
1.0
|
S1
|
A:SF4703
|
3.9
|
18.5
|
1.0
|
CA
|
A:CYS196
|
3.9
|
18.5
|
1.0
|
H
|
A:THR198
|
3.9
|
18.5
|
1.0
|
HG
|
A:LEU201
|
4.0
|
18.5
|
1.0
|
OG1
|
A:THR198
|
4.0
|
18.5
|
1.0
|
CB
|
A:ALA200
|
4.1
|
18.5
|
1.0
|
HD3
|
A:PRO197
|
4.1
|
18.5
|
1.0
|
HB3
|
A:CYS149
|
4.2
|
18.5
|
1.0
|
HB3
|
A:CYS196
|
4.2
|
18.5
|
1.0
|
CD1
|
A:LEU201
|
4.3
|
18.5
|
1.0
|
HD11
|
A:LEU201
|
4.3
|
18.5
|
1.0
|
HA
|
A:CYS143
|
4.3
|
18.5
|
1.0
|
H
|
A:LEU201
|
4.4
|
18.5
|
1.0
|
HB2
|
A:ALA200
|
4.4
|
18.5
|
1.0
|
N
|
A:PRO197
|
4.4
|
18.5
|
1.0
|
HB1
|
A:ALA200
|
4.4
|
18.5
|
1.0
|
C
|
A:CYS196
|
4.6
|
18.5
|
1.0
|
CG
|
A:LEU201
|
4.6
|
18.5
|
1.0
|
HG2
|
A:PRO197
|
4.6
|
18.5
|
1.0
|
HG23
|
A:THR198
|
4.6
|
18.5
|
1.0
|
SG
|
A:CYS146
|
4.7
|
18.5
|
1.0
|
HB2
|
A:LEU201
|
4.7
|
18.5
|
1.0
|
H
|
A:ALA200
|
4.7
|
18.5
|
1.0
|
N
|
A:THR198
|
4.8
|
18.5
|
1.0
|
H
|
A:ILE144
|
4.8
|
18.5
|
1.0
|
SG
|
A:CYS149
|
4.8
|
18.5
|
1.0
|
CG
|
A:PRO197
|
4.8
|
18.5
|
1.0
|
H
|
A:CYS149
|
4.8
|
18.5
|
1.0
|
HB2
|
A:CYS143
|
4.9
|
18.5
|
1.0
|
N
|
A:LEU201
|
4.9
|
18.5
|
1.0
|
SG
|
A:CYS143
|
4.9
|
18.5
|
1.0
|
CB
|
A:CYS149
|
5.0
|
18.5
|
1.0
|
|
Iron binding site 10 out
of 104 in 7p5h
Go back to
Iron Binding Sites List in 7p5h
Iron binding site 10 out
of 104 in the Tmhydabc- D2 Map
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Tmhydabc- D2 Map within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe703
b:18.5
occ:1.00
|
FE2
|
A:SF4703
|
0.0
|
18.5
|
1.0
|
SG
|
A:CYS149
|
2.3
|
18.5
|
1.0
|
S4
|
A:SF4703
|
2.3
|
18.5
|
1.0
|
S1
|
A:SF4703
|
2.3
|
18.5
|
1.0
|
S3
|
A:SF4703
|
2.3
|
18.5
|
1.0
|
FE4
|
A:SF4703
|
2.7
|
18.5
|
1.0
|
FE3
|
A:SF4703
|
2.7
|
18.5
|
1.0
|
FE1
|
A:SF4703
|
2.7
|
18.5
|
1.0
|
HB3
|
A:CYS149
|
2.8
|
18.5
|
1.0
|
H
|
A:CYS149
|
3.0
|
18.5
|
1.0
|
CB
|
A:CYS149
|
3.1
|
18.5
|
1.0
|
HD11
|
A:LEU201
|
3.6
|
18.5
|
1.0
|
HD12
|
A:LEU201
|
3.7
|
18.5
|
1.0
|
N
|
A:CYS149
|
3.8
|
18.5
|
1.0
|
HB2
|
A:CYS149
|
3.9
|
18.5
|
1.0
|
S2
|
A:SF4703
|
3.9
|
18.5
|
1.0
|
HG11
|
A:VAL173
|
4.0
|
14.2
|
1.0
|
H
|
A:GLY147
|
4.0
|
18.5
|
1.0
|
HG21
|
A:VAL173
|
4.0
|
14.2
|
1.0
|
CA
|
A:CYS149
|
4.1
|
18.5
|
1.0
|
CD1
|
A:LEU201
|
4.2
|
18.5
|
1.0
|
H
|
A:ASP148
|
4.3
|
18.5
|
1.0
|
H
|
A:VAL150
|
4.4
|
18.5
|
1.0
|
SG
|
A:CYS146
|
4.5
|
18.5
|
1.0
|
HA2
|
A:GLY147
|
4.6
|
18.5
|
1.0
|
HG
|
A:LEU201
|
4.6
|
18.5
|
1.0
|
N
|
A:ASP148
|
4.6
|
18.5
|
1.0
|
HB
|
A:VAL173
|
4.6
|
14.2
|
1.0
|
N
|
A:GLY147
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS143
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS196
|
4.7
|
18.5
|
1.0
|
HG23
|
A:VAL150
|
4.7
|
18.5
|
1.0
|
CG1
|
A:VAL173
|
4.7
|
14.2
|
1.0
|
HA
|
A:CYS149
|
4.7
|
18.5
|
1.0
|
HB2
|
A:CYS196
|
4.7
|
18.5
|
1.0
|
HB2
|
A:ASP148
|
4.8
|
18.5
|
1.0
|
HD2
|
A:PRO197
|
4.8
|
18.5
|
1.0
|
HA
|
A:CYS196
|
4.8
|
18.5
|
1.0
|
HG12
|
A:VAL173
|
4.8
|
14.2
|
1.0
|
H
|
A:CYS146
|
4.9
|
18.5
|
1.0
|
HD13
|
A:LEU201
|
4.9
|
18.5
|
1.0
|
CG2
|
A:VAL173
|
4.9
|
14.2
|
1.0
|
C
|
A:GLY147
|
4.9
|
18.5
|
1.0
|
C
|
A:ASP148
|
4.9
|
18.5
|
1.0
|
CA
|
A:GLY147
|
4.9
|
18.5
|
1.0
|
N
|
A:VAL150
|
4.9
|
18.5
|
1.0
|
|
Reference:
C.Furlan,
N.Chongdar,
P.Gupta,
W.Lubitz,
H.Ogata,
J.N.Blaza,
J.A.Birrell.
Structural Insight on the Mechanism of An Electron-Bifurcating [Fefe] Hydrogenase. Elife V. 11 2022.
ISSN: ESSN 2050-084X
PubMed: 36018003
DOI: 10.7554/ELIFE.79361
Page generated: Thu Aug 8 14:56:50 2024
|