Iron in PDB 7p62: Complex I From E. Coli, Ddm-Purified, Apo, Resting State

The structure of Complex I From E. Coli, Ddm-Purified, Apo, Resting State also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Iron atom in the Complex I From E. Coli, Ddm-Purified, Apo, Resting State (pdb code 7p62). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 32 binding sites of Iron where determined in the Complex I From E. Coli, Ddm-Purified, Apo, Resting State, PDB code: 7p62:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 32 in the Complex I From E. Coli, Ddm-Purified, Apo, Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Complex I From E. Coli, Ddm-Purified, Apo, Resting State within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe501 b:86.0 occ:1.00 FE1 F:SF4501 0.0 86.0 1.0 S4 F:SF4501 2.3 149.6 1.0 S2 F:SF4501 2.3 86.7 1.0 S3 F:SF4501 2.3 141.9 1.0 SG F:CYS354 2.3 72.4 1.0 FE2 F:SF4501 2.6 103.6 1.0 FE3 F:SF4501 2.7 98.3 1.0 FE4 F:SF4501 2.8 76.3 1.0 CB F:CYS354 3.4 53.7 1.0 N F:CYS354 3.8 47.7 1.0 S1 F:SF4501 3.9 106.7 1.0 O F:CYS354 4.0 50.6 1.0 CA F:CYS354 4.0 48.5 1.0 CB F:CYS357 4.2 42.7 1.0 CB F:PHE397 4.3 45.5 1.0 C F:CYS354 4.3 42.3 1.0 N F:PHE397 4.4 48.5 1.0 SG F:CYS357 4.5 62.1 1.0 N F:CYS398 4.6 52.2 1.0 CB F:THR396 4.8 44.5 1.0 CA F:PHE397 4.8 45.0 1.0 SG F:CYS398 4.8 61.1 1.0 SG F:CYS351 4.8 38.7 1.0 CB F:TRP353 4.9 42.1 1.0 C F:TRP353 4.9 48.8 1.0

Iron binding site 2 out of 32 in the Complex I From E. Coli, Ddm-Purified, Apo, Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Complex I From E. Coli, Ddm-Purified, Apo, Resting State within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe501 b:103.6 occ:1.00 FE2 F:SF4501 0.0 103.6 1.0 S4 F:SF4501 2.3 149.6 1.0 S1 F:SF4501 2.3 106.7 1.0 S3 F:SF4501 2.3 141.9 1.0 SG F:CYS357 2.3 62.1 1.0 FE1 F:SF4501 2.6 86.0 1.0 FE4 F:SF4501 2.7 76.3 1.0 FE3 F:SF4501 2.7 98.3 1.0 CB F:CYS357 3.0 42.7 1.0 S2 F:SF4501 3.9 86.7 1.0 CB F:SER350 4.0 38.8 1.0 OG F:SER350 4.3 16.3 1.0 ND1 F:HIS400 4.3 69.0 1.0 O F:CYS351 4.4 63.9 1.0 CA F:CYS357 4.4 40.0 1.0 CB F:HIS400 4.5 64.1 1.0 N F:CYS351 4.5 46.2 1.0 SG F:CYS354 4.6 72.4 1.0 CG F:HIS400 4.7 69.3 1.0 C F:CYS357 4.8 45.5 1.0 N F:ARG358 4.9 31.6 1.0 SG F:CYS398 4.9 61.1 1.0 SG F:CYS351 4.9 38.7 1.0 CA F:SER350 5.0 49.5 1.0 O F:CYS354 5.0 50.6 1.0

Iron binding site 3 out of 32 in the Complex I From E. Coli, Ddm-Purified, Apo, Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Complex I From E. Coli, Ddm-Purified, Apo, Resting State within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe501 b:98.3 occ:1.00 FE3 F:SF4501 0.0 98.3 1.0 S4 F:SF4501 2.3 149.6 1.0 S2 F:SF4501 2.3 86.7 1.0 S1 F:SF4501 2.3 106.7 1.0 SG F:CYS398 2.3 61.1 1.0 FE4 F:SF4501 2.7 76.3 1.0 FE2 F:SF4501 2.7 103.6 1.0 FE1 F:SF4501 2.7 86.0 1.0 CB F:CYS398 3.4 58.9 1.0 CB F:HIS400 3.9 64.1 1.0 S3 F:SF4501 3.9 141.9 1.0 N F:CYS398 4.0 52.2 1.0 CA F:CYS398 4.1 47.3 1.0 C F:CYS398 4.4 48.5 1.0 CD1 F:ILE179 4.5 69.7 1.0 N F:HIS400 4.5 54.0 1.0 CG F:PRO197 4.6 48.1 1.0 O F:CYS398 4.6 57.0 1.0 SG F:CYS351 4.7 38.7 1.0 CA F:HIS400 4.8 47.8 1.0 CG F:HIS400 4.8 69.3 1.0 SG F:CYS354 4.8 72.4 1.0 SG F:CYS357 4.9 62.1 1.0 N F:ALA399 4.9 46.1 1.0

Iron binding site 4 out of 32 in the Complex I From E. Coli, Ddm-Purified, Apo, Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Complex I From E. Coli, Ddm-Purified, Apo, Resting State within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe501 b:76.3 occ:1.00 FE4 F:SF4501 0.0 76.3 1.0 S1 F:SF4501 2.3 106.7 1.0 S3 F:SF4501 2.3 141.9 1.0 S2 F:SF4501 2.3 86.7 1.0 SG F:CYS351 2.3 38.7 1.0 FE3 F:SF4501 2.7 98.3 1.0 FE2 F:SF4501 2.7 103.6 1.0 FE1 F:SF4501 2.8 86.0 1.0 CB F:CYS351 3.6 40.1 1.0 N F:CYS351 3.8 46.2 1.0 O F:CYS351 3.8 63.9 1.0 S4 F:SF4501 3.9 149.6 1.0 C F:CYS351 3.9 60.1 1.0 CA F:CYS351 3.9 42.6 1.0 N F:TRP353 4.2 42.2 1.0 CB F:TRP353 4.2 42.1 1.0 N F:CYS354 4.6 47.7 1.0 N F:GLY352 4.7 61.6 1.0 CD F:PRO197 4.7 46.6 1.0 SG F:CYS398 4.7 61.1 1.0 CA F:TRP353 4.7 46.5 1.0 CG F:PRO197 4.8 48.1 1.0 SG F:CYS357 4.9 62.1 1.0 CG1 F:ILE179 4.9 70.8 1.0 SG F:CYS354 4.9 72.4 1.0 C F:SER350 5.0 48.8 1.0

Iron binding site 5 out of 32 in the Complex I From E. Coli, Ddm-Purified, Apo, Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Complex I From E. Coli, Ddm-Purified, Apo, Resting State within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe201 b:83.1 occ:1.00 FE1 E:FES201 0.0 83.1 1.0 S2 E:FES201 2.2 73.8 1.0 S1 E:FES201 2.2 114.3 1.0 SG E:CYS92 2.3 95.3 1.0 SG E:CYS97 2.3 86.5 1.0 FE2 E:FES201 2.7 85.3 1.0 OG E:SER94 3.2 65.6 1.0 CB E:CYS92 3.5 69.0 1.0 CB E:CYS97 3.6 69.9 1.0 ND2 E:ASN142 3.7 75.4 1.0 N E:CYS97 4.1 68.2 1.0 SG E:CYS133 4.3 79.1 1.0 CA E:CYS97 4.5 72.7 1.0 CB E:SER94 4.5 47.9 1.0 SG E:CYS137 4.6 88.8 1.0 N E:LEU134 4.6 81.8 1.0 CA E:CYS137 4.8 79.2 1.0 CG E:ASN142 4.9 71.2 1.0 CA E:CYS92 4.9 65.2 1.0

Iron binding site 6 out of 32 in the Complex I From E. Coli, Ddm-Purified, Apo, Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Complex I From E. Coli, Ddm-Purified, Apo, Resting State within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe201 b:85.3 occ:1.00 FE2 E:FES201 0.0 85.3 1.0 S2 E:FES201 2.2 73.8 1.0 S1 E:FES201 2.2 114.3 1.0 SG E:CYS137 2.3 88.8 1.0 SG E:CYS133 2.3 79.1 1.0 FE1 E:FES201 2.7 83.1 1.0 CB E:CYS137 3.6 76.9 1.0 CA E:CYS137 3.9 79.2 1.0 CB E:CYS133 3.9 75.4 1.0 N E:GLY135 3.9 66.5 1.0 N E:LEU134 4.0 81.8 1.0 OG E:SER94 4.0 65.6 1.0 N E:CYS137 4.1 79.1 1.0 N F:GLY97 4.2 83.5 1.0 CA F:PRO96 4.3 100.5 1.0 N E:ASN136 4.3 78.8 1.0 SG E:CYS92 4.3 95.3 1.0 CA E:CYS133 4.5 76.4 1.0 CA E:GLY135 4.6 69.5 1.0 C E:ASN136 4.7 83.5 1.0 ND2 E:ASN142 4.7 75.4 1.0 SG E:CYS97 4.7 86.5 1.0 C E:CYS133 4.8 92.0 1.0 C F:PRO96 4.8 90.4 1.0 O F:GLU95 4.8 107.6 1.0 C E:LEU134 4.8 76.3 1.0 C E:GLY135 4.9 78.5 1.0 CA E:LEU134 4.9 72.3 1.0 CB F:PRO96 5.0 108.1 1.0

Iron binding site 7 out of 32 in the Complex I From E. Coli, Ddm-Purified, Apo, Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Complex I From E. Coli, Ddm-Purified, Apo, Resting State within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe1001 b:29.7 occ:1.00 FE1 G:SF41001 0.0 29.7 1.0 S2 G:SF41001 2.3 64.3 1.0 S3 G:SF41001 2.3 52.8 1.0 S4 G:SF41001 2.3 58.8 1.0 SG G:CYS114 2.3 44.6 1.0 FE4 G:SF41001 2.7 14.7 1.0 FE3 G:SF41001 2.7 52.5 1.0 FE2 G:SF41001 2.7 44.6 1.0 CB G:CYS114 3.4 34.0 1.0 CG G:GLN117 3.9 36.6 1.0 S1 G:SF41001 3.9 60.3 1.0 NE2 G:GLN117 4.1 52.1 1.0 NE2 G:HIS101 4.5 54.1 1.0 CD G:GLN117 4.5 35.5 1.0 CB G:LEU116 4.5 28.3 1.0 CD2 G:LEU116 4.7 46.5 1.0 N G:GLN117 4.7 26.3 1.0 SG G:CYS108 4.7 31.6 1.0 CB G:GLU110 4.8 28.7 1.0 CA G:CYS114 4.8 27.1 1.0 N G:GLY206 4.8 66.4 1.0 CE1 G:HIS101 4.9 42.3 1.0 SG G:CYS105 4.9 73.9 1.0 CA G:THR205 4.9 46.0 1.0 CG G:LEU116 5.0 40.4 1.0

Iron binding site 8 out of 32 in the Complex I From E. Coli, Ddm-Purified, Apo, Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Complex I From E. Coli, Ddm-Purified, Apo, Resting State within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe1001 b:44.6 occ:1.00 FE2 G:SF41001 0.0 44.6 1.0 S1 G:SF41001 2.3 60.3 1.0 S3 G:SF41001 2.3 52.8 1.0 S4 G:SF41001 2.3 58.8 1.0 SG G:CYS105 2.3 73.9 1.0 FE4 G:SF41001 2.7 14.7 1.0 FE3 G:SF41001 2.7 52.5 1.0 FE1 G:SF41001 2.7 29.7 1.0 CB G:CYS105 3.5 26.6 1.0 NE2 G:GLN117 3.5 52.1 1.0 CA G:CYS105 3.7 40.2 1.0 NE2 G:HIS101 3.8 54.1 1.0 S2 G:SF41001 3.9 64.3 1.0 CD1 C:ILE516 4.2 49.2 1.0 N G:CYS105 4.3 38.4 1.0 CG G:GLN117 4.4 36.6 1.0 CD G:GLN117 4.4 35.5 1.0 CD2 G:HIS101 4.6 49.5 1.0 SG G:CYS108 4.8 31.6 1.0 CE1 G:HIS101 4.8 42.3 1.0 SG G:CYS114 4.9 44.6 1.0 CB G:CYS108 4.9 26.0 1.0 CD1 C:ILE512 4.9 25.8 1.0 C G:CYS105 4.9 35.7 1.0 C G:ASP104 5.0 39.3 1.0

Iron binding site 9 out of 32 in the Complex I From E. Coli, Ddm-Purified, Apo, Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Complex I From E. Coli, Ddm-Purified, Apo, Resting State within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe1001 b:52.5 occ:1.00 FE3 G:SF41001 0.0 52.5 1.0 NE2 G:HIS101 2.1 54.1 1.0 S2 G:SF41001 2.3 64.3 1.0 S4 G:SF41001 2.3 58.8 1.0 S1 G:SF41001 2.3 60.3 1.0 CE1 G:HIS101 2.5 42.3 1.0 FE2 G:SF41001 2.7 44.6 1.0 FE4 G:SF41001 2.7 14.7 1.0 FE1 G:SF41001 2.7 29.7 1.0 CD2 G:HIS101 3.5 49.5 1.0 CG G:ARG152 3.6 26.9 1.0 ND1 G:HIS101 3.8 42.1 1.0 S3 G:SF41001 3.9 52.8 1.0 CB G:ARG152 4.0 32.6 1.0 CG G:HIS101 4.3 38.3 1.0 CD2 G:LEU116 4.4 46.5 1.0 O G:ARG152 4.5 30.7 1.0 CA G:ARG152 4.6 30.4 1.0 SG G:CYS105 4.8 73.9 1.0 SG G:CYS114 4.8 44.6 1.0 SG G:CYS108 4.8 31.6 1.0 N G:GLY206 4.9 66.4 1.0 CD G:ARG152 5.0 39.6 1.0

Iron binding site 10 out of 32 in the Complex I From E. Coli, Ddm-Purified, Apo, Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Complex I From E. Coli, Ddm-Purified, Apo, Resting State within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe1001 b:14.7 occ:1.00 FE4 G:SF41001 0.0 14.7 1.0 S2 G:SF41001 2.3 64.3 1.0 S1 G:SF41001 2.3 60.3 1.0 S3 G:SF41001 2.3 52.8 1.0 SG G:CYS108 2.3 31.6 1.0 FE1 G:SF41001 2.7 29.7 1.0 FE2 G:SF41001 2.7 44.6 1.0 FE3 G:SF41001 2.7 52.5 1.0 CB G:CYS108 3.2 26.0 1.0 S4 G:SF41001 3.9 58.8 1.0 CG G:ARG152 4.1 26.9 1.0 NH1 G:ARG152 4.1 47.1 1.0 CZ G:ARG152 4.4 54.9 1.0 N G:GLY206 4.4 66.4 1.0 CB G:GLU110 4.5 28.7 1.0 CA G:GLY206 4.6 55.8 1.0 CA G:CYS108 4.7 28.6 1.0 CA G:CYS105 4.7 40.2 1.0 NE2 G:HIS101 4.7 54.1 1.0 SG G:CYS114 4.7 44.6 1.0 SG G:CYS105 4.8 73.9 1.0 NE G:ARG152 4.8 56.0 1.0 N G:GLY111 4.9 35.5 1.0 O G:ASP104 4.9 47.7 1.0 NH2 G:ARG152 4.9 64.1 1.0 NE2 G:GLN117 5.0 52.1 1.0 CB G:ARG152 5.0 32.6 1.0 CD G:ARG152 5.0 39.6 1.0

V.Kravchuk, O.Petrova, D.Kampjut, A.Wojciechowska-Bason, Z.Breese, L.Sazanov. A Universal Coupling Mechanism of Respiratory Complex I. Nature V. 609 808 2022.
ISSN: ESSN 1476-4687
PubMed: 36104567
DOI: 10.1038/S41586-022-05199-7