Atomistry » Iron » PDB 7p7k-7pq1 » 7p7l
Atomistry »
  Iron »
    PDB 7p7k-7pq1 »
      7p7l »

Iron in PDB 7p7l: Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State

Other elements in 7p7l:

The structure of Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Iron atom in the Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State (pdb code 7p7l). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 32 binding sites of Iron where determined in the Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State, PDB code: 7p7l:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 32 in 7p7l

Go back to Iron Binding Sites List in 7p7l
Iron binding site 1 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe501

b:131.5
occ:1.00
 FE1 F:SF4501 0.0 131.5 1.0
S4 F:SF4501 2.3 101.1 1.0
S3 F:SF4501 2.3 163.0 1.0
S2 F:SF4501 2.3 158.2 1.0
SG F:CYS354 2.3 81.3 1.0
FE2 F:SF4501 2.6 152.6 1.0
FE3 F:SF4501 2.7 124.7 1.0
FE4 F:SF4501 2.8 184.5 1.0
CB F:CYS354 3.5 70.0 1.0
N F:CYS354 3.5 53.4 1.0
S1 F:SF4501 3.9 130.9 1.0
CA F:CYS354 4.0 48.3 1.0
CB F:PHE397 4.0 126.9 1.0
O F:CYS354 4.1 59.6 1.0
N F:PHE397 4.2 112.0 1.0
CB F:CYS357 4.3 47.0 1.0
C F:CYS354 4.4 48.6 1.0
SG F:CYS357 4.5 112.8 1.0
CB F:TRP353 4.6 86.7 1.0
N F:TRP353 4.6 97.9 1.0
C F:TRP353 4.6 65.5 1.0
CA F:PHE397 4.7 117.0 1.0
CB F:THR396 4.7 90.0 1.0
N F:CYS398 4.8 116.6 1.0
CA F:TRP353 4.8 82.6 1.0
SG F:CYS351 4.9 160.1 1.0

Iron binding site 2 out of 32 in 7p7l

Go back to Iron Binding Sites List in 7p7l
Iron binding site 2 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe501

b:152.6
occ:1.00
 FE2 F:SF4501 0.0 152.6 1.0
S4 F:SF4501 2.3 101.1 1.0
S3 F:SF4501 2.3 163.0 1.0
S1 F:SF4501 2.3 130.9 1.0
SG F:CYS357 2.3 112.8 1.0
FE1 F:SF4501 2.6 131.5 1.0
FE4 F:SF4501 2.7 184.5 1.0
FE3 F:SF4501 2.8 124.7 1.0
OG F:SER350 3.1 117.1 1.0
CB F:CYS357 3.1 47.0 1.0
ND1 F:HIS400 3.7 160.4 1.0
S2 F:SF4501 3.9 158.2 1.0
CE1 F:HIS400 4.2 159.3 1.0
CB F:SER350 4.4 111.9 1.0
CA F:CYS357 4.5 33.3 1.0
N F:GLY352 4.5 130.4 1.0
SG F:CYS354 4.5 81.3 1.0
N F:CYS351 4.7 131.3 1.0
CB F:ALA401 4.7 94.5 1.0
CG F:HIS400 4.8 158.6 1.0
N F:ARG358 4.8 27.3 1.0
SG F:CYS351 4.9 160.1 1.0
C F:CYS357 4.9 29.9 1.0

Iron binding site 3 out of 32 in 7p7l

Go back to Iron Binding Sites List in 7p7l
Iron binding site 3 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe501

b:124.7
occ:1.00
 FE3 F:SF4501 0.0 124.7 1.0
S4 F:SF4501 2.3 101.1 1.0
S2 F:SF4501 2.3 158.2 1.0
S1 F:SF4501 2.3 130.9 1.0
FE4 F:SF4501 2.6 184.5 1.0
FE1 F:SF4501 2.7 131.5 1.0
FE2 F:SF4501 2.8 152.6 1.0
SG F:CYS398 3.1 117.3 1.0
S3 F:SF4501 3.9 163.0 1.0
CB F:CYS398 4.0 125.8 1.0
CB F:HIS400 4.1 147.1 1.0
ND1 F:HIS400 4.2 160.4 1.0
N F:CYS398 4.2 116.6 1.0
CG F:HIS400 4.5 158.6 1.0
CA F:CYS398 4.5 121.5 1.0
SG F:CYS351 4.7 160.1 1.0
CG F:PRO197 4.7 125.5 1.0
N F:HIS400 4.7 138.6 1.0
C F:CYS398 4.8 120.5 1.0
CD1 F:ILE179 4.8 121.9 1.0
SG F:CYS354 4.8 81.3 1.0
SG F:CYS357 4.9 112.8 1.0
O F:CYS398 4.9 114.2 1.0
N F:ALA401 4.9 120.4 1.0
CA F:HIS400 4.9 137.8 1.0
CB F:PHE397 5.0 126.9 1.0

Iron binding site 4 out of 32 in 7p7l

Go back to Iron Binding Sites List in 7p7l
Iron binding site 4 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe501

b:184.5
occ:1.00
 FE4 F:SF4501 0.0 184.5 1.0
S2 F:SF4501 2.3 158.2 1.0
S3 F:SF4501 2.3 163.0 1.0
S1 F:SF4501 2.3 130.9 1.0
SG F:CYS351 2.3 160.1 1.0
FE3 F:SF4501 2.6 124.7 1.0
FE2 F:SF4501 2.7 152.6 1.0
FE1 F:SF4501 2.8 131.5 1.0
CB F:CYS351 3.4 152.6 1.0
N F:TRP353 3.5 97.9 1.0
N F:GLY352 3.6 130.4 1.0
CB F:TRP353 3.9 86.7 1.0
S4 F:SF4501 3.9 101.1 1.0
N F:CYS351 4.0 131.3 1.0
CA F:CYS351 4.0 144.2 1.0
C F:CYS351 4.0 140.0 1.0
OG F:SER350 4.2 117.1 1.0
CA F:TRP353 4.3 82.6 1.0
N F:CYS354 4.5 53.4 1.0
C F:GLY352 4.5 106.0 1.0
CA F:GLY352 4.5 113.6 1.0
CD F:PRO197 4.8 122.0 1.0
SG F:CYS357 4.9 112.8 1.0
CG F:PRO197 4.9 125.5 1.0
O F:CYS351 4.9 137.3 1.0
C F:TRP353 4.9 65.5 1.0
SG F:CYS354 5.0 81.3 1.0

Iron binding site 5 out of 32 in 7p7l

Go back to Iron Binding Sites List in 7p7l
Iron binding site 5 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:124.1
occ:1.00
 FE1 E:FES201 0.0 124.1 1.0
S2 E:FES201 2.2 150.0 1.0
S1 E:FES201 2.2 125.0 1.0
SG E:CYS92 2.3 150.8 1.0
SG E:CYS97 2.3 137.3 1.0
FE2 E:FES201 2.7 124.1 1.0
CB E:CYS92 3.3 121.0 1.0
CB E:CYS97 3.6 123.5 1.0
ND2 E:ASN142 3.7 115.3 1.0
N E:CYS97 4.2 118.2 1.0
CA E:CYS97 4.5 117.5 1.0
CB E:SER94 4.5 119.8 1.0
N E:LEU134 4.6 124.8 1.0
CA E:CYS92 4.7 112.2 1.0
OG E:SER94 4.8 123.8 1.0
N E:SER94 4.8 107.4 1.0
CG E:ASN142 4.9 118.1 1.0
CA E:CYS133 4.9 138.0 1.0
C E:CYS92 4.9 112.9 1.0

Iron binding site 6 out of 32 in 7p7l

Go back to Iron Binding Sites List in 7p7l
Iron binding site 6 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:124.1
occ:1.00
 FE2 E:FES201 0.0 124.1 1.0
S2 E:FES201 2.2 150.0 1.0
S1 E:FES201 2.2 125.0 1.0
FE1 E:FES201 2.7 124.1 1.0
SG E:CYS133 3.1 171.4 1.0
SG E:CYS137 3.1 139.0 1.0
CB E:CYS137 3.9 157.3 1.0
N E:CYS137 3.9 157.8 1.0
CA E:CYS137 3.9 162.1 1.0
N E:LEU134 4.1 124.8 1.0
N E:GLY135 4.2 125.8 1.0
N E:ASN136 4.2 142.6 1.0
CB E:CYS133 4.2 150.2 1.0
SG E:CYS92 4.3 150.8 1.0
CA E:CYS133 4.3 138.0 1.0
C E:ASN136 4.4 152.9 1.0
N F:GLY97 4.5 142.7 1.0
C E:CYS133 4.7 134.4 1.0
SG E:CYS97 4.7 137.3 1.0
ND2 E:ASN142 4.7 115.3 1.0
CA E:GLY135 4.8 130.2 1.0
O E:ASN136 4.8 151.5 1.0
CB E:VAL96 4.8 123.5 1.0
C E:GLY135 4.9 139.5 1.0
CA E:ASN136 4.9 146.3 1.0
C E:LEU134 5.0 124.1 1.0
CA E:LEU134 5.0 118.8 1.0

Iron binding site 7 out of 32 in 7p7l

Go back to Iron Binding Sites List in 7p7l
Iron binding site 7 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe1001

b:25.6
occ:1.00
 FE1 G:SF41001 0.0 25.6 1.0
S2 G:SF41001 2.3 47.8 1.0
S3 G:SF41001 2.3 51.0 1.0
S4 G:SF41001 2.3 31.1 1.0
SG G:CYS114 2.3 22.2 1.0
FE4 G:SF41001 2.7 25.0 1.0
FE3 G:SF41001 2.7 23.3 1.0
FE2 G:SF41001 2.7 16.2 1.0
CB G:CYS114 3.3 19.0 1.0
S1 G:SF41001 3.9 28.9 1.0
CG G:GLN117 4.1 21.7 1.0
NE2 G:HIS101 4.2 25.4 1.0
CD G:GLN117 4.5 20.3 1.0
CB G:LEU116 4.5 33.6 1.0
N G:GLN117 4.6 16.4 1.0
CB G:GLU110 4.7 24.6 1.0
NE2 G:GLN117 4.7 33.1 1.0
CA G:CYS114 4.7 16.5 1.0
SG G:CYS108 4.8 27.4 1.0
CD2 G:LEU116 4.8 45.9 1.0
SG G:CYS105 4.8 22.8 1.0
CE1 G:HIS101 4.9 16.1 1.0
N G:GLY206 4.9 24.7 1.0
CA G:THR205 4.9 26.0 1.0
CB G:GLN117 4.9 21.8 1.0
CG G:LEU116 5.0 38.6 1.0

Iron binding site 8 out of 32 in 7p7l

Go back to Iron Binding Sites List in 7p7l
Iron binding site 8 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe1001

b:16.2
occ:1.00
 FE2 G:SF41001 0.0 16.2 1.0
S1 G:SF41001 2.3 28.9 1.0
S3 G:SF41001 2.3 51.0 1.0
S4 G:SF41001 2.3 31.1 1.0
SG G:CYS105 2.3 22.8 1.0
FE4 G:SF41001 2.7 25.0 1.0
FE3 G:SF41001 2.7 23.3 1.0
FE1 G:SF41001 2.7 25.6 1.0
CB G:CYS105 3.5 14.2 1.0
CA G:CYS105 3.6 13.5 1.0
NE2 G:GLN117 3.7 33.1 1.0
S2 G:SF41001 3.9 47.8 1.0
NE2 G:HIS101 4.0 25.4 1.0
N G:CYS105 4.0 14.1 1.0
CG G:GLN117 4.2 21.7 1.0
CD G:GLN117 4.3 20.3 1.0
CD2 G:HIS101 4.6 27.6 1.0
CG1 C:ILE516 4.7 30.4 1.0
C G:ASP104 4.8 17.3 1.0
SG G:CYS108 4.8 27.4 1.0
CD1 C:ILE516 4.8 26.2 1.0
SG G:CYS114 4.8 22.2 1.0
CB G:CYS108 4.9 13.0 1.0
CD1 C:ILE512 4.9 51.3 1.0
C G:CYS105 5.0 13.5 1.0

Iron binding site 9 out of 32 in 7p7l

Go back to Iron Binding Sites List in 7p7l
Iron binding site 9 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe1001

b:23.3
occ:1.00
 FE3 G:SF41001 0.0 23.3 1.0
NE2 G:HIS101 1.9 25.4 1.0
S2 G:SF41001 2.3 47.8 1.0
S1 G:SF41001 2.3 28.9 1.0
S4 G:SF41001 2.3 31.1 1.0
CE1 G:HIS101 2.6 16.1 1.0
FE1 G:SF41001 2.7 25.6 1.0
FE2 G:SF41001 2.7 16.2 1.0
FE4 G:SF41001 2.7 25.0 1.0
CD2 G:HIS101 3.2 27.6 1.0
ND1 G:HIS101 3.8 22.5 1.0
S3 G:SF41001 3.9 51.0 1.0
CG G:HIS101 4.1 25.7 1.0
CB G:ARG152 4.2 22.3 1.0
CG G:ARG152 4.2 21.4 1.0
CD2 G:LEU116 4.4 45.9 1.0
CD G:ARG152 4.6 19.8 1.0
SG G:CYS114 4.8 22.2 1.0
SG G:CYS105 4.8 22.8 1.0
SG G:CYS108 4.8 27.4 1.0
CA G:ARG152 4.9 22.6 1.0
O G:ARG152 5.0 41.1 1.0

Iron binding site 10 out of 32 in 7p7l

Go back to Iron Binding Sites List in 7p7l
Iron binding site 10 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Complex I From E. Coli, Ddm/Lmng-Purified, with Nadh and Fmn, Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe1001

b:25.0
occ:1.00
 FE4 G:SF41001 0.0 25.0 1.0
S2 G:SF41001 2.3 47.8 1.0
S3 G:SF41001 2.3 51.0 1.0
S1 G:SF41001 2.3 28.9 1.0
SG G:CYS108 2.3 27.4 1.0
FE1 G:SF41001 2.7 25.6 1.0
FE2 G:SF41001 2.7 16.2 1.0
FE3 G:SF41001 2.7 23.3 1.0
CB G:CYS108 3.2 13.0 1.0
S4 G:SF41001 3.9 31.1 1.0
CD G:ARG152 4.2 19.8 1.0
CB G:GLU110 4.4 24.6 1.0
NE G:ARG152 4.5 28.4 1.0
N G:GLY206 4.6 24.7 1.0
CA G:CYS108 4.6 18.6 1.0
NE2 G:HIS101 4.6 25.4 1.0
CA G:CYS105 4.7 13.5 1.0
CG G:ARG152 4.7 21.4 1.0
CA G:GLY206 4.7 22.5 1.0
SG G:CYS114 4.8 22.2 1.0
N G:GLY111 4.8 15.8 1.0
SG G:CYS105 4.8 22.8 1.0
C G:GLU110 4.9 16.4 1.0
N G:GLU110 4.9 15.9 1.0
CA G:GLU110 5.0 17.5 1.0
N G:CYS105 5.0 14.1 1.0

Reference:

V.Kravchuk, O.Petrova, D.Kampjut, A.Wojciechowska-Bason, Z.Breese, L.Sazanov. A Universal Coupling Mechanism of Respiratory Complex I. Nature V. 609 808 2022.
ISSN: ESSN 1476-4687
PubMed: 36104567
DOI: 10.1038/S41586-022-05199-7
Page generated: Thu Aug 8 16:30:25 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy