Iron in PDB 7p7m: Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State

The structure of Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Iron atom in the Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State (pdb code 7p7m). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 32 binding sites of Iron where determined in the Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State, PDB code: 7p7m:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe501 b:59.3 occ:1.00 FE1 F:SF4501 0.0 59.3 1.0 S4 F:SF4501 2.3 86.6 1.0 S2 F:SF4501 2.3 104.4 1.0 S3 F:SF4501 2.3 107.6 1.0 SG F:CYS354 2.3 29.4 1.0 FE2 F:SF4501 2.6 88.6 1.0 FE3 F:SF4501 2.7 96.5 1.0 FE4 F:SF4501 2.8 89.6 1.0 CB F:CYS354 3.5 20.2 1.0 N F:CYS354 3.7 14.9 1.0 S1 F:SF4501 3.9 70.0 1.0 CA F:CYS354 4.0 18.7 1.0 CB F:CYS357 4.1 19.8 1.0 O F:CYS354 4.2 38.6 1.0 CB F:PHE397 4.2 53.6 1.0 N F:PHE397 4.3 64.7 1.0 SG F:CYS357 4.4 66.6 1.0 N F:CYS398 4.5 85.0 1.0 C F:CYS354 4.5 29.8 1.0 CB F:TRP353 4.7 26.7 1.0 C F:TRP353 4.8 23.4 1.0 CA F:PHE397 4.8 66.1 1.0 CB F:THR396 4.8 91.7 1.0 SG F:CYS398 4.8 84.1 1.0 N F:TRP353 4.9 45.6 1.0 SG F:CYS351 4.9 62.5 1.0

Iron binding site 2 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe501 b:88.6 occ:1.00 FE2 F:SF4501 0.0 88.6 1.0 S4 F:SF4501 2.3 86.6 1.0 S3 F:SF4501 2.3 107.6 1.0 S1 F:SF4501 2.3 70.0 1.0 SG F:CYS357 2.3 66.6 1.0 FE1 F:SF4501 2.6 59.3 1.0 FE4 F:SF4501 2.7 89.6 1.0 FE3 F:SF4501 2.7 96.5 1.0 CB F:CYS357 3.0 19.8 1.0 CD2 F:HIS400 3.6 96.5 1.0 OG F:SER350 3.7 57.5 1.0 S2 F:SF4501 3.9 104.4 1.0 CB F:SER350 4.2 50.1 1.0 CG F:HIS400 4.4 99.8 1.0 CA F:CYS357 4.5 29.3 1.0 NE2 F:HIS400 4.5 99.0 1.0 N F:CYS351 4.5 57.8 1.0 SG F:CYS354 4.6 29.4 1.0 CB F:HIS400 4.7 89.0 1.0 CA F:SER350 4.7 51.0 1.0 N F:ARG358 4.9 28.9 1.0 SG F:CYS351 4.9 62.5 1.0 C F:CYS357 4.9 38.1 1.0 SG F:CYS398 4.9 84.1 1.0 CB F:ALA401 4.9 60.5 1.0

Iron binding site 3 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe501 b:96.5 occ:1.00 FE3 F:SF4501 0.0 96.5 1.0 S4 F:SF4501 2.3 86.6 1.0 S2 F:SF4501 2.3 104.4 1.0 S1 F:SF4501 2.3 70.0 1.0 SG F:CYS398 2.3 84.1 1.0 FE4 F:SF4501 2.6 89.6 1.0 FE2 F:SF4501 2.7 88.6 1.0 FE1 F:SF4501 2.7 59.3 1.0 CB F:CYS398 3.4 83.6 1.0 CB F:HIS400 3.9 89.0 1.0 S3 F:SF4501 3.9 107.6 1.0 N F:CYS398 4.0 85.0 1.0 CA F:CYS398 4.1 84.3 1.0 C F:CYS398 4.3 83.8 1.0 N F:HIS400 4.4 82.8 1.0 CD1 F:ILE179 4.4 102.8 1.0 O F:CYS398 4.5 85.1 1.0 CG F:HIS400 4.5 99.8 1.0 CD2 F:HIS400 4.6 96.5 1.0 SG F:CYS351 4.6 62.5 1.0 CG F:PRO197 4.7 90.7 1.0 CA F:HIS400 4.7 79.8 1.0 SG F:CYS354 4.8 29.4 1.0 SG F:CYS357 4.9 66.6 1.0 N F:ALA399 4.9 79.9 1.0 CG1 F:ILE179 4.9 104.3 1.0 N F:ALA401 4.9 68.7 1.0

Iron binding site 4 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe501 b:89.6 occ:1.00 FE4 F:SF4501 0.0 89.6 1.0 S1 F:SF4501 2.3 70.0 1.0 S3 F:SF4501 2.3 107.6 1.0 S2 F:SF4501 2.3 104.4 1.0 SG F:CYS351 2.3 62.5 1.0 FE3 F:SF4501 2.6 96.5 1.0 FE2 F:SF4501 2.7 88.6 1.0 FE1 F:SF4501 2.8 59.3 1.0 CB F:CYS351 3.6 55.5 1.0 N F:CYS351 3.7 57.8 1.0 S4 F:SF4501 3.9 86.6 1.0 N F:TRP353 3.9 45.6 1.0 CB F:TRP353 4.0 26.7 1.0 CA F:CYS351 4.0 57.3 1.0 N F:GLY352 4.1 58.7 1.0 C F:CYS351 4.3 61.4 1.0 OG F:SER350 4.5 57.5 1.0 CA F:TRP353 4.5 32.0 1.0 CD F:PRO197 4.6 83.0 1.0 N F:CYS354 4.6 14.9 1.0 SG F:CYS398 4.7 84.1 1.0 CG F:PRO197 4.8 90.7 1.0 CG1 F:ILE179 4.9 104.3 1.0 C F:SER350 4.9 57.9 1.0 SG F:CYS357 4.9 66.6 1.0 C F:GLY352 4.9 50.5 1.0 SG F:CYS354 5.0 29.4 1.0 CA F:GLY352 5.0 48.7 1.0

Iron binding site 5 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe201 b:107.9 occ:1.00 FE1 E:FES201 0.0 107.9 1.0 S2 E:FES201 2.2 95.3 1.0 S1 E:FES201 2.2 101.9 1.0 SG E:CYS92 2.3 90.8 1.0 SG E:CYS97 2.3 81.2 1.0 FE2 E:FES201 2.7 99.7 1.0 CB E:CYS92 3.5 85.4 1.0 CB E:CYS97 3.7 82.9 1.0 ND2 E:ASN142 3.7 92.8 1.0 N E:CYS97 4.1 87.8 1.0 N E:LEU134 4.3 93.0 1.0 CA E:CYS133 4.3 89.3 1.0 CB E:SER94 4.4 94.4 1.0 SG E:CYS133 4.4 110.3 1.0 CA E:CYS97 4.5 93.5 1.0 CB E:CYS133 4.6 90.2 1.0 SG E:CYS137 4.7 117.3 1.0 CA E:CYS137 4.7 113.7 1.0 CA E:CYS92 4.8 89.0 1.0 C E:CYS133 4.8 90.8 1.0 CG E:ASN142 4.9 90.8 1.0 N E:SER94 4.9 81.3 1.0 CB E:CYS137 5.0 116.3 1.0

Iron binding site 6 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe201 b:99.7 occ:1.00 FE2 E:FES201 0.0 99.7 1.0 S2 E:FES201 2.2 95.3 1.0 S1 E:FES201 2.2 101.9 1.0 SG E:CYS133 2.3 110.3 1.0 SG E:CYS137 2.3 117.3 1.0 FE1 E:FES201 2.7 107.9 1.0 CB E:CYS137 3.3 116.3 1.0 CB E:CYS133 3.4 90.2 1.0 CA E:CYS137 3.7 113.7 1.0 N E:CYS137 3.8 111.5 1.0 N E:LEU134 3.9 93.0 1.0 CA E:CYS133 3.9 89.3 1.0 N E:GLY135 4.0 93.5 1.0 C E:CYS133 4.2 90.8 1.0 N E:ASN136 4.2 106.5 1.0 N F:GLY97 4.3 102.2 1.0 SG E:CYS92 4.4 90.8 1.0 C E:ASN136 4.5 104.0 1.0 CA E:GLY135 4.6 96.8 1.0 SG E:CYS97 4.7 81.2 1.0 ND2 E:ASN142 4.7 92.8 1.0 CG2 E:VAL96 4.8 90.9 1.0 CA F:PRO96 4.8 95.0 1.0 CB E:VAL96 4.8 98.5 1.0 C E:GLY135 4.9 108.2 1.0 C E:LEU134 4.9 94.4 1.0 CA E:LEU134 4.9 95.2 1.0

Iron binding site 7 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe1001 b:32.6 occ:1.00 FE1 G:SF41001 0.0 32.6 1.0 S2 G:SF41001 2.3 23.1 1.0 S4 G:SF41001 2.3 28.3 1.0 S3 G:SF41001 2.3 29.3 1.0 SG G:CYS114 2.3 22.2 1.0 FE4 G:SF41001 2.7 19.8 1.0 FE2 G:SF41001 2.7 32.7 1.0 FE3 G:SF41001 2.7 31.5 1.0 CB G:CYS114 3.3 15.1 1.0 S1 G:SF41001 3.9 45.3 1.0 CG G:GLN117 4.2 39.8 1.0 NE2 G:HIS101 4.3 18.9 1.0 CB G:LEU116 4.5 15.5 1.0 CD G:GLN117 4.7 37.6 1.0 N G:GLN117 4.7 25.0 1.0 CA G:CYS114 4.7 20.9 1.0 N G:GLY206 4.8 28.8 1.0 SG G:CYS108 4.8 26.1 1.0 SG G:CYS105 4.8 38.5 1.0 CB G:GLU110 4.8 43.6 1.0 CD2 G:LEU116 4.8 43.7 1.0 CA G:THR205 4.9 22.2 1.0 NE2 G:GLN117 4.9 62.5 1.0 CE1 G:HIS101 4.9 14.6 1.0 CB G:GLN117 5.0 35.6 1.0

Iron binding site 8 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe1001 b:32.7 occ:1.00 FE2 G:SF41001 0.0 32.7 1.0 S1 G:SF41001 2.3 45.3 1.0 S3 G:SF41001 2.3 29.3 1.0 S4 G:SF41001 2.3 28.3 1.0 SG G:CYS105 2.3 38.5 1.0 FE4 G:SF41001 2.7 19.8 1.0 FE3 G:SF41001 2.7 31.5 1.0 FE1 G:SF41001 2.7 32.6 1.0 CB G:CYS105 3.5 24.0 1.0 CA G:CYS105 3.6 19.1 1.0 S2 G:SF41001 3.9 23.1 1.0 NE2 G:HIS101 4.0 18.9 1.0 N G:CYS105 4.0 19.2 1.0 NE2 G:GLN117 4.0 62.5 1.0 CG G:GLN117 4.4 39.8 1.0 CD2 G:HIS101 4.5 17.6 1.0 CD G:GLN117 4.6 37.6 1.0 CG1 C:ILE516 4.6 29.8 1.0 C G:ASP104 4.7 25.8 1.0 SG G:CYS108 4.8 26.1 1.0 CD1 C:ILE516 4.8 49.4 1.0 CB G:CYS108 4.8 33.7 1.0 SG G:CYS114 4.8 22.2 1.0 CD1 C:ILE512 4.9 38.7 1.0 C G:CYS105 4.9 17.6 1.0

Iron binding site 9 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe1001 b:31.5 occ:1.00 FE3 G:SF41001 0.0 31.5 1.0 NE2 G:HIS101 2.0 18.9 1.0 S2 G:SF41001 2.3 23.1 1.0 S4 G:SF41001 2.3 28.3 1.0 S1 G:SF41001 2.3 45.3 1.0 CE1 G:HIS101 2.7 14.6 1.0 FE2 G:SF41001 2.7 32.7 1.0 FE4 G:SF41001 2.7 19.8 1.0 FE1 G:SF41001 2.7 32.6 1.0 CD2 G:HIS101 3.2 17.6 1.0 ND1 G:HIS101 3.9 15.1 1.0 S3 G:SF41001 3.9 29.3 1.0 CG G:ARG152 3.9 31.1 1.0 CB G:ARG152 4.1 33.4 1.0 CG G:HIS101 4.1 18.4 1.0 CD G:ARG152 4.5 32.6 1.0 CD2 G:LEU116 4.5 43.7 1.0 SG G:CYS105 4.8 38.5 1.0 O G:ARG152 4.8 35.2 1.0 SG G:CYS108 4.8 26.1 1.0 CA G:ARG152 4.8 33.9 1.0 SG G:CYS114 4.8 22.2 1.0 N G:GLY206 4.9 28.8 1.0

Iron binding site 10 out of 32 in the Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Complex I From E. Coli, Ddm/Lmng-Purified, Inhibited By Piericidin A, Open State within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe1001 b:19.8 occ:1.00 FE4 G:SF41001 0.0 19.8 1.0 S2 G:SF41001 2.3 23.1 1.0 S1 G:SF41001 2.3 45.3 1.0 S3 G:SF41001 2.3 29.3 1.0 SG G:CYS108 2.3 26.1 1.0 FE1 G:SF41001 2.7 32.6 1.0 FE2 G:SF41001 2.7 32.7 1.0 FE3 G:SF41001 2.7 31.5 1.0 CB G:CYS108 3.2 33.7 1.0 S4 G:SF41001 3.9 28.3 1.0 CD G:ARG152 4.1 32.6 1.0 NE G:ARG152 4.3 46.4 1.0 N G:GLY206 4.4 28.8 1.0 CB G:GLU110 4.4 43.6 1.0 CG G:ARG152 4.5 31.1 1.0 CA G:GLY206 4.5 29.6 1.0 CA G:CYS108 4.6 28.3 1.0 NE2 G:HIS101 4.6 18.9 1.0 CA G:CYS105 4.7 19.1 1.0 SG G:CYS114 4.8 22.2 1.0 SG G:CYS105 4.8 38.5 1.0 N G:GLY111 4.9 37.1 1.0 CZ G:ARG152 4.9 49.0 1.0 N G:GLU110 5.0 39.7 1.0 O G:ASP104 5.0 33.2 1.0 C G:GLU110 5.0 37.9 1.0

V.Kravchuk, O.Petrova, D.Kampjut, A.Wojciechowska-Bason, Z.Breese, L.Sazanov. A Universal Coupling Mechanism of Respiratory Complex I. Nature V. 609 808 2022.
ISSN: ESSN 1476-4687
PubMed: 36104567
DOI: 10.1038/S41586-022-05199-7