Iron in PDB 7plm: Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions

All present enzymatic activity of Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions:
1.2.7.1;

The structure of Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Calcium	(Ca)	2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Iron atom in the Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions (pdb code 7plm). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 24 binding sites of Iron where determined in the Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions, PDB code: 7plm:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 24 in the Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1301 b:37.3 occ:1.00 FE1 A:SF41301 0.0 37.3 1.0 SG A:CYS755 2.3 39.1 1.0 S2 A:SF41301 2.3 25.4 1.0 S3 A:SF41301 2.3 14.2 1.0 S4 A:SF41301 2.3 36.4 1.0 FE4 A:SF41301 2.7 34.4 1.0 FE2 A:SF41301 2.7 54.5 1.0 FE3 A:SF41301 2.7 31.2 1.0 CB A:CYS755 3.5 25.4 1.0 CD A:PRO756 3.8 24.9 1.0 CB A:ALA761 3.9 23.9 1.0 S1 A:SF41301 3.9 25.5 1.0 CA A:CYS755 3.9 24.9 1.0 CD1 A:LEU762 4.3 19.9 1.0 CD A:PRO757 4.4 37.3 1.0 N A:PRO756 4.4 27.9 1.0 C A:CYS755 4.5 27.7 1.0 SG A:CYS695 4.6 28.2 1.0 SG A:CYS692 4.7 16.1 0.5 CG A:LEU762 4.8 17.4 1.0 SG A:CYS689 4.8 19.3 1.0 CG A:PRO757 4.8 33.7 1.0 CA A:ALA761 4.9 23.8 1.0 CB A:CYS695 5.0 12.1 1.0

Iron binding site 2 out of 24 in the Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1301 b:54.5 occ:1.00 FE2 A:SF41301 0.0 54.5 1.0 S4 A:SF41301 2.3 36.4 1.0 S1 A:SF41301 2.3 25.5 1.0 SG A:CYS695 2.3 28.2 1.0 S3 A:SF41301 2.3 14.2 1.0 FE3 A:SF41301 2.7 31.2 1.0 FE4 A:SF41301 2.7 34.4 1.0 FE1 A:SF41301 2.7 37.3 1.0 CB A:CYS695 3.4 12.1 1.0 S2 A:SF41301 3.9 25.4 1.0 N A:CYS695 4.1 5.6 1.0 CD1 A:ILE738 4.1 20.7 1.0 CD1 A:LEU762 4.2 19.9 1.0 CA A:CYS695 4.4 11.1 1.0 CG1 A:ILE738 4.5 20.5 1.0 SG A:CYS692 4.7 16.1 0.5 SG A:CYS689 4.7 19.3 1.0 SG A:CYS755 4.8 39.1 1.0 N A:GLN694 4.8 22.1 1.0 N A:ASN693 4.8 21.0 1.0 CG2 A:ILE738 4.9 23.4 1.0

Iron binding site 3 out of 24 in the Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1301 b:31.2 occ:1.00 FE3 A:SF41301 0.0 31.2 1.0 SG A:CYS692 2.2 16.1 0.5 S4 A:SF41301 2.3 36.4 1.0 S1 A:SF41301 2.3 25.5 1.0 S2 A:SF41301 2.3 25.4 1.0 FE2 A:SF41301 2.7 54.5 1.0 FE4 A:SF41301 2.7 34.4 1.0 FE1 A:SF41301 2.7 37.3 1.0 CB A:CYS692 3.3 18.4 0.5 N A:CYS692 3.5 22.2 0.5 N A:CYS692 3.5 22.3 0.5 CB A:CYS692 3.6 18.6 0.5 CD A:PRO756 3.7 24.9 1.0 S3 A:SF41301 3.9 14.2 1.0 CA A:CYS692 3.9 21.2 0.5 CA A:CYS692 4.0 21.2 0.5 N A:ASN693 4.0 21.0 1.0 C A:CYS692 4.3 21.5 0.5 C A:CYS692 4.3 21.4 0.5 N A:GLN694 4.4 22.1 1.0 CG A:PRO756 4.4 28.0 1.0 CG1 A:ILE690 4.4 23.4 1.0 N A:GLN691 4.6 25.1 1.0 C A:GLN691 4.7 27.4 1.0 SG A:CYS695 4.7 28.2 1.0 SG A:CYS689 4.7 19.3 1.0 SG A:CYS755 4.7 39.1 1.0 N A:CYS695 4.9 5.6 1.0 CA A:GLN691 4.9 26.8 1.0 SG A:CYS692 4.9 15.5 0.5 CA A:ASN693 5.0 18.2 1.0

Iron binding site 4 out of 24 in the Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1301 b:34.4 occ:1.00 FE4 A:SF41301 0.0 34.4 1.0 SG A:CYS689 2.3 19.3 1.0 S3 A:SF41301 2.3 14.2 1.0 S2 A:SF41301 2.3 25.4 1.0 S1 A:SF41301 2.3 25.5 1.0 FE1 A:SF41301 2.7 37.3 1.0 FE2 A:SF41301 2.7 54.5 1.0 FE3 A:SF41301 2.7 31.2 1.0 CB A:CYS689 3.4 25.7 1.0 CA A:CYS689 3.8 24.2 1.0 N A:GLN691 3.8 25.1 1.0 S4 A:SF41301 3.9 36.4 1.0 N A:ILE690 4.0 18.2 1.0 NE1 A:TRP684 4.0 10.0 1.0 C A:CYS689 4.3 23.6 1.0 CA A:GLN691 4.4 26.8 1.0 CB A:ALA761 4.4 23.9 1.0 N A:CYS692 4.5 22.2 0.5 N A:CYS692 4.5 22.3 0.5 CG1 A:ILE738 4.7 20.5 1.0 SG A:CYS755 4.8 39.1 1.0 C A:ILE690 4.8 22.5 1.0 SG A:CYS692 4.8 16.1 0.5 CD1 A:TRP684 4.9 17.1 1.0 CE2 A:TRP684 4.9 12.2 1.0 SG A:CYS695 4.9 28.2 1.0 CA A:ILE690 4.9 20.5 1.0 CD1 A:ILE738 5.0 20.7 1.0

Iron binding site 5 out of 24 in the Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1302 b:22.2 occ:1.00 FE1 A:SF41302 0.0 22.2 1.0 S2 A:SF41302 2.3 16.2 1.0 SG A:CYS751 2.3 10.3 1.0 S4 A:SF41302 2.3 10.7 1.0 S3 A:SF41302 2.3 0.0 1.0 FE3 A:SF41302 2.7 20.6 1.0 FE4 A:SF41302 2.7 29.8 1.0 FE2 A:SF41302 2.7 28.0 1.0 CB A:CYS751 3.5 14.3 1.0 CG A:PRO682 3.9 19.1 1.0 S1 A:SF41302 3.9 20.4 1.0 N A:CYS751 4.1 14.3 1.0 CD A:PRO682 4.3 19.4 1.0 CD1 A:ILE704 4.4 5.9 1.0 N A:GLY749 4.4 13.4 1.0 CA A:CYS751 4.4 15.8 1.0 N A:ASN750 4.6 8.8 1.0 SG A:CYS745 4.7 13.1 1.0 SG A:CYS699 4.7 7.8 1.0 CA A:GLY749 4.7 4.6 1.0 SG A:CYS748 4.7 12.0 1.0 CB A:PRO682 4.8 15.3 1.0 CG1 A:ILE704 4.9 11.6 1.0 C A:GLY749 5.0 7.5 1.0

Iron binding site 6 out of 24 in the Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1302 b:28.0 occ:1.00 FE2 A:SF41302 0.0 28.0 1.0 SG A:CYS699 2.3 7.8 1.0 S1 A:SF41302 2.3 20.4 1.0 S3 A:SF41302 2.3 0.0 1.0 S4 A:SF41302 2.3 10.7 1.0 FE4 A:SF41302 2.7 29.8 1.0 FE1 A:SF41302 2.7 22.2 1.0 FE3 A:SF41302 2.7 20.6 1.0 CB A:CYS699 3.5 5.5 1.0 S2 A:SF41302 3.9 16.2 1.0 CD A:PRO700 4.1 11.9 1.0 CA A:CYS699 4.2 0.2 1.0 CB A:ALA703 4.4 16.9 1.0 CG1 A:ILE704 4.5 11.6 1.0 SG A:CYS748 4.6 12.0 1.0 N A:PRO700 4.6 16.0 1.0 SG A:CYS751 4.7 10.3 1.0 N A:ALA703 4.7 7.3 1.0 CD1 A:ILE704 4.7 5.9 1.0 C A:CYS699 4.7 13.5 1.0 SG A:CYS745 4.8 13.1 1.0 N A:HIS701 4.9 2.4 1.0

Iron binding site 7 out of 24 in the Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1302 b:20.6 occ:1.00 FE3 A:SF41302 0.0 20.6 1.0 SG A:CYS745 2.3 13.1 1.0 S4 A:SF41302 2.3 10.7 1.0 S2 A:SF41302 2.3 16.2 1.0 S1 A:SF41302 2.3 20.4 1.0 FE1 A:SF41302 2.7 22.2 1.0 FE2 A:SF41302 2.7 28.0 1.0 FE4 A:SF41302 2.7 29.8 1.0 N A:GLY747 3.5 19.0 1.0 CB A:CYS745 3.6 16.4 1.0 N A:MET746 3.8 11.0 1.0 S3 A:SF41302 3.9 0.0 1.0 CA A:CYS745 4.0 17.1 1.0 CD A:PRO682 4.1 19.4 1.0 CA A:GLY747 4.1 14.9 1.0 N A:CYS748 4.2 5.6 1.0 C A:CYS745 4.3 14.1 1.0 CG A:PRO682 4.5 19.1 1.0 C A:MET746 4.5 13.3 1.0 CA A:MET746 4.6 13.8 1.0 C A:GLY747 4.7 11.6 1.0 CB A:ALA703 4.8 16.9 1.0 SG A:CYS699 4.9 7.8 1.0 SG A:CYS748 4.9 12.0 1.0 SG A:CYS751 4.9 10.3 1.0

Iron binding site 8 out of 24 in the Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1302 b:29.8 occ:1.00 FE4 A:SF41302 0.0 29.8 1.0 SG A:CYS748 2.3 12.0 1.0 S3 A:SF41302 2.3 0.0 1.0 S1 A:SF41302 2.3 20.4 1.0 S2 A:SF41302 2.3 16.2 1.0 FE2 A:SF41302 2.7 28.0 1.0 FE1 A:SF41302 2.7 22.2 1.0 FE3 A:SF41302 2.7 20.6 1.0 N A:CYS748 3.2 5.6 1.0 CB A:CYS748 3.4 8.1 1.0 N A:GLY749 3.4 13.4 1.0 CA A:CYS748 3.7 4.8 1.0 S4 A:SF41302 3.9 10.7 1.0 C A:CYS748 3.9 17.2 1.0 N A:ASN750 4.1 8.8 1.0 C A:GLY747 4.3 11.6 1.0 CD A:PRO700 4.4 11.9 1.0 CA A:GLY749 4.4 4.6 1.0 N A:GLY747 4.4 19.0 1.0 ND2 A:ASN750 4.6 5.5 1.0 O A:HOH1433 4.6 13.8 1.0 SG A:CYS751 4.7 10.3 1.0 CA A:GLY747 4.7 14.9 1.0 SG A:CYS699 4.7 7.8 1.0 C A:GLY749 4.7 7.5 1.0 CB A:ASN750 4.8 17.4 1.0 SG A:CYS745 4.8 13.1 1.0 N A:CYS751 4.9 14.3 1.0 CA A:ASN750 5.0 11.8 1.0

Iron binding site 9 out of 24 in the Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1303 b:42.0 occ:1.00 FE1 A:SF41303 0.0 42.0 1.0 SG A:CYS840 2.3 31.0 1.0 S4 A:SF41303 2.3 21.6 1.0 S2 A:SF41303 2.3 15.9 1.0 S3 A:SF41303 2.3 14.5 1.0 FE4 A:SF41303 2.7 28.1 1.0 FE3 A:SF41303 2.7 18.7 1.0 FE2 A:SF41303 2.7 35.5 1.0 CB A:CYS840 3.0 24.1 1.0 S1 A:SF41303 3.9 8.3 1.0 CE A:LYS459 4.0 16.9 1.0 NZ A:LYS459 4.1 20.0 1.0 CB A:SER995 4.3 12.4 1.0 CD A:LYS459 4.4 9.2 1.0 CA A:CYS840 4.4 19.2 1.0 SG A:CYS1071 4.6 17.4 1.0 SG A:CYS812 4.6 20.3 1.0 OE1 A:GLU817 4.7 20.8 1.0 SG A:CYS815 4.7 13.0 1.0 CD1 A:TRP844 4.8 18.4 1.0 NE1 A:TRP844 4.9 8.2 1.0 OD2 B:ASP1198 5.0 57.3 1.0

Iron binding site 10 out of 24 in the Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryoem Reconstruction of Pyruvate Ferredoxin Oxidoreductase (Pfor) in Anaerobic Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1303 b:35.5 occ:1.00 FE2 A:SF41303 0.0 35.5 1.0 SG A:CYS812 2.3 20.3 1.0 S1 A:SF41303 2.3 8.3 1.0 S3 A:SF41303 2.3 14.5 1.0 S4 A:SF41303 2.3 21.6 1.0 FE1 A:SF41303 2.7 42.0 1.0 FE4 A:SF41303 2.7 28.1 1.0 FE3 A:SF41303 2.7 18.7 1.0 CB A:CYS812 2.9 8.5 1.0 N A:CYS812 3.7 14.9 1.0 S2 A:SF41303 3.9 15.9 1.0 CA A:CYS812 3.9 11.7 1.0 CD A:LYS459 4.0 9.2 1.0 OD2 B:ASP1198 4.4 57.3 1.0 CG1 A:ILE1072 4.4 14.0 1.0 SG A:CYS1071 4.5 17.4 1.0 CG2 A:ILE1072 4.6 11.4 1.0 OD1 B:ASP1198 4.6 56.7 1.0 CB A:CYS815 4.6 5.5 1.0 CE A:LYS459 4.6 16.9 1.0 SG A:CYS815 4.7 13.0 1.0 NZ A:LYS459 4.7 20.0 1.0 CG B:ASP1198 4.8 55.5 1.0 SG A:CYS840 4.8 31.0 1.0 N A:ILE1072 4.8 0.0 1.0 CD1 A:ILE1072 4.9 10.3 1.0 C A:ALA811 4.9 10.8 1.0 C A:CYS812 4.9 12.9 1.0

M.V.Cherrier, X.Vernede, D.Fenel, L.Martin, B.Arragain, E.Neumann, J.C.Fontecilla-Camps, G.Schoehn, Y.Nicolet. Oxygen-Sensitive Metalloprotein Structure Determination By Cryo-Electron Microscopy. Biomolecules V. 12 2022.
ISSN: ESSN 2218-273X
PubMed: 35327633
DOI: 10.3390/BIOM12030441