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Iron in PDB 7px0: Drosophila Melanogaster Aldehyde Oxidase 1

Enzymatic activity of Drosophila Melanogaster Aldehyde Oxidase 1

All present enzymatic activity of Drosophila Melanogaster Aldehyde Oxidase 1:
1.2.3.8;

Protein crystallography data

The structure of Drosophila Melanogaster Aldehyde Oxidase 1, PDB code: 7px0 was solved by G.Vilela-Alves, C.Mota, M.J.Romao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.66 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 144.663, 127.914, 152.547, 90, 110.63, 90
R / Rfree (%) 17.5 / 22

Other elements in 7px0:

The structure of Drosophila Melanogaster Aldehyde Oxidase 1 also contains other interesting chemical elements:

Molybdenum (Mo) 4 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iron atom in the Drosophila Melanogaster Aldehyde Oxidase 1 (pdb code 7px0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the Drosophila Melanogaster Aldehyde Oxidase 1, PDB code: 7px0:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 16 in 7px0

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Iron binding site 1 out of 16 in the Drosophila Melanogaster Aldehyde Oxidase 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Drosophila Melanogaster Aldehyde Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1301

b:19.5
occ:1.00
 FE1 A:FES1301 0.0 19.5 1.0
S2 A:FES1301 2.2 19.8 1.0
S1 A:FES1301 2.2 21.4 1.0
SG A:CYS115 2.3 20.7 1.0
SG A:CYS148 2.3 18.2 1.0
FE2 A:FES1301 2.8 19.1 1.0
CB A:CYS148 3.3 16.7 1.0
CB A:CYS115 3.5 18.8 1.0
CA A:CYS148 3.7 17.1 1.0
N A:ARG149 4.2 17.5 1.0
C A:CYS148 4.4 17.3 1.0
CB A:CYS150 4.4 19.2 1.0
N A:CYS115 4.4 17.5 1.0
O A:HOH1475 4.4 22.4 1.0
N A:CYS150 4.5 17.9 1.0
CA A:CYS115 4.5 18.0 1.0
SG A:CYS150 4.5 20.9 1.0
SG A:CYS112 4.7 17.7 1.0
CG2 A:THR151 4.8 15.6 1.0
N A:CYS148 4.9 16.5 1.0
O A:ILE147 5.0 16.0 1.0

Iron binding site 2 out of 16 in 7px0

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Iron binding site 2 out of 16 in the Drosophila Melanogaster Aldehyde Oxidase 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Drosophila Melanogaster Aldehyde Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1301

b:19.1
occ:1.00
 FE2 A:FES1301 0.0 19.1 1.0
S2 A:FES1301 2.2 19.8 1.0
S1 A:FES1301 2.2 21.4 1.0
SG A:CYS112 2.3 17.7 1.0
SG A:CYS150 2.4 20.9 1.0
FE1 A:FES1301 2.8 19.5 1.0
CB A:CYS112 3.3 18.1 1.0
CB A:CYS150 3.3 19.2 1.0
N A:CYS112 3.6 16.0 1.0
O A:HOH1869 3.7 11.2 1.0
N A:GLY113 3.9 17.2 1.0
CA A:CYS112 3.9 16.5 1.0
N A:CYS150 4.2 17.9 1.0
C A:CYS112 4.3 17.5 1.0
CA A:CYS150 4.4 17.7 1.0
SG A:CYS148 4.4 18.2 1.0
OH A:TYR780 4.5 24.7 1.0
N A:TYR114 4.5 17.2 1.0
SG A:CYS115 4.7 20.7 1.0
C A:GLN111 4.7 16.2 1.0
CB A:GLN111 4.8 16.4 1.0
N A:ARG149 4.8 17.5 1.0
CA A:GLY113 4.9 17.5 1.0

Iron binding site 3 out of 16 in 7px0

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Iron binding site 3 out of 16 in the Drosophila Melanogaster Aldehyde Oxidase 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Drosophila Melanogaster Aldehyde Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1302

b:18.9
occ:1.00
 FE1 A:FES1302 0.0 18.9 1.0
S1 A:FES1302 2.2 17.8 1.0
SG A:CYS47 2.3 19.1 1.0
S2 A:FES1302 2.3 18.2 1.0
SG A:CYS42 2.3 20.9 1.0
FE2 A:FES1302 2.7 18.3 1.0
CB A:CYS47 3.4 17.7 1.0
CB A:CYS42 3.5 20.7 1.0
N A:CYS42 3.6 19.4 1.0
N A:CYS47 3.6 17.5 1.0
N A:GLY48 3.8 16.1 1.0
N A:GLN43 3.8 20.6 1.0
CA A:CYS47 3.9 16.7 1.0
CA A:CYS42 3.9 20.5 1.0
C A:CYS47 4.2 15.9 1.0
C A:CYS42 4.3 20.3 1.0
N A:GLY46 4.4 16.9 1.0
SG A:CYS72 4.4 21.0 1.0
N A:GLY45 4.4 18.6 1.0
N A:VAL49 4.5 16.3 1.0
N A:GLU44 4.5 19.6 1.0
SG A:CYS50 4.6 19.1 1.0
N A:MET41 4.6 20.0 1.0
CG2 A:VAL49 4.6 18.1 1.0
C A:MET41 4.7 20.3 1.0
C A:GLY46 4.8 17.8 1.0
CA A:GLN43 4.8 22.8 1.0
C A:GLY45 4.8 17.8 1.0
CA A:GLY48 4.9 16.1 1.0
CA A:GLY45 4.9 18.6 1.0

Iron binding site 4 out of 16 in 7px0

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Iron binding site 4 out of 16 in the Drosophila Melanogaster Aldehyde Oxidase 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Drosophila Melanogaster Aldehyde Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1302

b:18.3
occ:1.00
 FE2 A:FES1302 0.0 18.3 1.0
S1 A:FES1302 2.2 17.8 1.0
S2 A:FES1302 2.2 18.2 1.0
SG A:CYS72 2.3 21.0 1.0
SG A:CYS50 2.3 19.1 1.0
FE1 A:FES1302 2.7 18.9 1.0
CB A:CYS72 3.1 21.1 1.0
CB A:CYS50 3.4 18.5 1.0
N A:CYS72 4.2 19.7 1.0
CA A:CYS72 4.3 19.8 1.0
SG A:CYS42 4.3 20.9 1.0
N A:GLY45 4.3 18.6 1.0
CB A:ASN70 4.3 23.6 1.0
N A:CYS50 4.4 18.0 1.0
ND2 A:ASN70 4.4 23.5 1.0
N A:GLN43 4.5 20.6 1.0
CA A:CYS50 4.5 18.0 1.0
CA A:GLN43 4.6 22.8 1.0
SG A:CYS47 4.6 19.1 1.0
CA A:GLY45 4.7 18.6 1.0
N A:GLU44 4.7 19.6 1.0
CG A:ASN70 4.9 24.2 1.0
C A:GLN43 4.9 20.6 1.0
N A:GLY48 4.9 16.1 1.0
CA A:ASN70 5.0 22.2 1.0

Iron binding site 5 out of 16 in 7px0

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Iron binding site 5 out of 16 in the Drosophila Melanogaster Aldehyde Oxidase 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Drosophila Melanogaster Aldehyde Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1301

b:23.7
occ:1.00
 FE1 B:FES1301 0.0 23.7 1.0
S2 B:FES1301 2.2 21.5 1.0
S1 B:FES1301 2.2 21.3 1.0
SG B:CYS115 2.3 21.5 1.0
SG B:CYS148 2.3 22.4 1.0
FE2 B:FES1301 2.8 22.9 1.0
CB B:CYS115 3.4 20.5 1.0
CB B:CYS148 3.4 21.6 1.0
CA B:CYS148 3.7 21.2 1.0
N B:ARG149 4.2 18.8 1.0
N B:CYS115 4.3 18.4 1.0
C B:CYS148 4.4 19.3 1.0
CA B:CYS115 4.4 18.8 1.0
O B:HOH1549 4.5 29.1 1.0
CB B:CYS150 4.5 23.1 1.0
N B:CYS150 4.5 21.6 1.0
SG B:CYS150 4.6 21.5 1.0
CG2 B:THR151 4.6 21.4 1.0
SG B:CYS112 4.7 21.0 1.0
N B:CYS148 5.0 22.5 1.0
O B:ILE147 5.0 21.4 1.0

Iron binding site 6 out of 16 in 7px0

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Iron binding site 6 out of 16 in the Drosophila Melanogaster Aldehyde Oxidase 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Drosophila Melanogaster Aldehyde Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1301

b:22.9
occ:1.00
 FE2 B:FES1301 0.0 22.9 1.0
S2 B:FES1301 2.2 21.5 1.0
S1 B:FES1301 2.2 21.3 1.0
SG B:CYS112 2.3 21.0 1.0
SG B:CYS150 2.4 21.5 1.0
FE1 B:FES1301 2.8 23.7 1.0
CB B:CYS112 3.3 20.6 1.0
CB B:CYS150 3.3 23.1 1.0
N B:CYS112 3.5 18.2 1.0
O B:HOH1817 3.7 19.1 1.0
CA B:CYS112 3.8 19.4 1.0
N B:GLY113 3.9 21.1 1.0
N B:CYS150 4.2 21.6 1.0
C B:CYS112 4.3 20.6 1.0
CA B:CYS150 4.4 21.7 1.0
OH B:TYR780 4.4 21.1 1.0
SG B:CYS148 4.4 22.4 1.0
N B:TYR114 4.5 19.5 1.0
C B:GLN111 4.6 19.0 1.0
SG B:CYS115 4.7 21.5 1.0
N B:ARG149 4.7 18.8 1.0
CB B:GLN111 4.8 16.9 1.0
N B:CYS115 5.0 18.4 1.0

Iron binding site 7 out of 16 in 7px0

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Iron binding site 7 out of 16 in the Drosophila Melanogaster Aldehyde Oxidase 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Drosophila Melanogaster Aldehyde Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1302

b:21.7
occ:1.00
 FE1 B:FES1302 0.0 21.7 1.0
S2 B:FES1302 2.2 21.5 1.0
S1 B:FES1302 2.2 22.9 1.0
SG B:CYS47 2.3 22.5 1.0
SG B:CYS42 2.3 22.1 1.0
FE2 B:FES1302 2.7 20.9 1.0
CB B:CYS47 3.4 24.3 1.0
CB B:CYS42 3.6 22.4 1.0
N B:CYS42 3.6 19.3 1.0
N B:CYS47 3.6 20.9 1.0
N B:GLN43 3.7 22.0 1.0
N B:GLY48 3.9 17.8 1.0
CA B:CYS47 3.9 21.3 1.0
CA B:CYS42 4.0 21.6 1.0
C B:CYS47 4.3 20.8 1.0
C B:CYS42 4.3 22.1 1.0
N B:GLY46 4.4 21.5 1.0
SG B:CYS50 4.5 20.2 1.0
SG B:CYS72 4.5 20.9 1.0
N B:GLY45 4.5 22.0 1.0
N B:VAL49 4.5 17.3 1.0
CG2 B:VAL49 4.6 16.9 1.0
N B:MET41 4.6 17.5 1.0
N B:GLU44 4.7 22.8 1.0
C B:MET41 4.7 19.9 1.0
CA B:GLN43 4.7 24.7 1.0
C B:GLY46 4.8 22.1 1.0
C B:GLY45 4.9 23.2 1.0
CA B:GLY48 4.9 18.5 1.0
CA B:GLY45 5.0 22.9 1.0
CB B:MET41 5.0 16.9 1.0

Iron binding site 8 out of 16 in 7px0

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Iron binding site 8 out of 16 in the Drosophila Melanogaster Aldehyde Oxidase 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Drosophila Melanogaster Aldehyde Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1302

b:20.9
occ:1.00
 FE2 B:FES1302 0.0 20.9 1.0
S1 B:FES1302 2.2 22.9 1.0
S2 B:FES1302 2.2 21.5 1.0
SG B:CYS50 2.3 20.2 1.0
SG B:CYS72 2.3 20.9 1.0
FE1 B:FES1302 2.7 21.7 1.0
CB B:CYS72 3.1 19.4 1.0
CB B:CYS50 3.4 19.2 1.0
CB B:ASN70 4.2 19.9 1.0
N B:CYS72 4.3 19.2 1.0
CA B:CYS72 4.3 19.4 1.0
SG B:CYS42 4.3 22.1 1.0
N B:GLY45 4.3 22.0 1.0
N B:GLN43 4.3 22.0 1.0
CA B:GLN43 4.4 24.7 1.0
N B:CYS50 4.5 19.3 1.0
ND2 B:ASN70 4.5 22.1 1.0
CA B:CYS50 4.5 19.5 1.0
CA B:GLY45 4.6 22.9 1.0
N B:GLU44 4.7 22.8 1.0
SG B:CYS47 4.7 22.5 1.0
CG B:ASN70 4.8 20.7 1.0
CA B:ASN70 4.9 19.7 1.0
C B:GLN43 4.9 22.6 1.0

Iron binding site 9 out of 16 in 7px0

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Iron binding site 9 out of 16 in the Drosophila Melanogaster Aldehyde Oxidase 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Drosophila Melanogaster Aldehyde Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1301

b:23.5
occ:1.00
 FE1 C:FES1301 0.0 23.5 1.0
S2 C:FES1301 2.2 22.3 1.0
S1 C:FES1301 2.2 22.4 1.0
SG C:CYS115 2.3 29.0 1.0
SG C:CYS148 2.3 26.0 1.0
FE2 C:FES1301 2.8 23.8 1.0
CB C:CYS148 3.3 28.0 1.0
CB C:CYS115 3.5 26.0 1.0
CA C:CYS148 3.7 25.8 1.0
N C:ARG149 4.3 20.9 1.0
N C:CYS115 4.4 23.6 1.0
C C:CYS148 4.4 23.7 1.0
CB C:CYS150 4.4 27.4 1.0
O C:HOH1622 4.4 23.7 1.0
CA C:CYS115 4.5 24.6 1.0
N C:CYS150 4.5 23.4 1.0
SG C:CYS150 4.6 25.6 1.0
SG C:CYS112 4.7 23.0 1.0
CG2 C:THR151 4.8 22.6 1.0
N C:CYS148 5.0 24.4 1.0

Iron binding site 10 out of 16 in 7px0

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Iron binding site 10 out of 16 in the Drosophila Melanogaster Aldehyde Oxidase 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Drosophila Melanogaster Aldehyde Oxidase 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1301

b:23.8
occ:1.00
 FE2 C:FES1301 0.0 23.8 1.0
S2 C:FES1301 2.2 22.3 1.0
S1 C:FES1301 2.2 22.4 1.0
SG C:CYS112 2.3 23.0 1.0
SG C:CYS150 2.4 25.6 1.0
FE1 C:FES1301 2.8 23.5 1.0
CB C:CYS112 3.2 23.1 1.0
CB C:CYS150 3.3 27.4 1.0
N C:CYS112 3.5 22.8 1.0
O C:HOH1729 3.7 19.4 1.0
CA C:CYS112 3.8 22.0 1.0
N C:GLY113 3.8 22.3 1.0
C C:CYS112 4.2 22.6 1.0
N C:CYS150 4.3 23.4 1.0
CA C:CYS150 4.4 25.4 1.0
SG C:CYS148 4.4 26.0 1.0
N C:TYR114 4.4 21.5 1.0
OH C:TYR780 4.5 25.7 1.0
C C:GLN111 4.6 22.5 1.0
SG C:CYS115 4.7 29.0 1.0
CB C:GLN111 4.8 23.3 1.0
N C:ARG149 4.8 20.9 1.0
CA C:GLY113 4.9 21.9 1.0
N C:GLN111 5.0 23.9 1.0

Reference:

G.Vilela-Alves, C.Mota, M.J.Romao. Drosophila Melanogaster'S Aldehyde Oxidase 1: the First Invertebrate Aox Structure To Be Published.
Page generated: Thu Aug 8 17:47:44 2024

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