Iron in PDB 7q21: III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum

All present enzymatic activity of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum:
7.1.1.8; 7.1.1.9;

The structure of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Calcium	(Ca)	2 atoms
Copper	(Cu)	6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iron atom in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum (pdb code 7q21). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum, PDB code: 7q21:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 16 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe602 b:43.5 occ:1.00 FE D:HAS602 0.0 43.5 1.0 NC D:HAS602 2.1 43.0 1.0 ND D:HAS602 2.1 43.4 1.0 NA D:HAS602 2.1 43.0 1.0 NB D:HAS602 2.1 43.9 1.0 NE2 D:HIS398 3.0 26.8 1.0 C4C D:HAS602 3.0 42.1 1.0 C1D D:HAS602 3.1 43.2 1.0 C1C D:HAS602 3.1 43.0 1.0 C1A D:HAS602 3.1 43.2 1.0 C1B D:HAS602 3.1 44.1 1.0 C4D D:HAS602 3.1 43.6 1.0 C4A D:HAS602 3.1 42.7 1.0 C4B D:HAS602 3.1 44.2 1.0 CHB D:HAS602 3.3 44.0 1.0 CHD D:HAS602 3.3 42.8 1.0 CHA D:HAS602 3.3 44.1 1.0 CHC D:HAS602 3.3 43.8 1.0 CD2 D:HIS398 3.9 26.9 1.0 CE1 D:HIS398 3.9 27.2 1.0 C3C D:HAS602 4.4 41.9 1.0 C2D D:HAS602 4.4 43.4 1.0 C2A D:HAS602 4.4 43.1 1.0 C2C D:HAS602 4.4 42.5 1.0 C2B D:HAS602 4.4 44.8 1.0 C3D D:HAS602 4.4 43.3 1.0 C3A D:HAS602 4.4 42.7 1.0 C3B D:HAS602 4.4 45.4 1.0 CU D:CU604 4.6 35.4 1.0 CE1 D:HIS265 4.9 32.8 1.0 CG1 D:VAL268 5.0 38.6 1.0

Iron binding site 2 out of 16 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe603 b:33.0 occ:1.00 FE D:HAS603 0.0 33.0 1.0 ND D:HAS603 2.1 34.0 1.0 NA D:HAS603 2.1 33.6 1.0 NC D:HAS603 2.1 33.9 1.0 NB D:HAS603 2.1 34.8 1.0 NE2 D:HIS400 2.3 26.0 1.0 NE2 D:HIS87 2.5 18.0 1.0 C1A D:HAS603 3.0 33.7 1.0 C1C D:HAS603 3.0 34.2 1.0 C4B D:HAS603 3.0 35.9 1.0 C1D D:HAS603 3.0 34.3 1.0 C4C D:HAS603 3.0 34.1 1.0 C4D D:HAS603 3.1 34.1 1.0 C4A D:HAS603 3.1 33.8 1.0 C1B D:HAS603 3.1 35.1 1.0 CD2 D:HIS400 3.2 25.8 1.0 CE1 D:HIS87 3.3 17.8 1.0 CHC D:HAS603 3.3 35.2 1.0 CE1 D:HIS400 3.3 26.5 1.0 CHA D:HAS603 3.3 33.9 1.0 CHD D:HAS603 3.3 34.0 1.0 CHB D:HAS603 3.3 34.9 1.0 CD2 D:HIS87 3.6 18.3 1.0 C2D D:HAS603 4.3 34.2 1.0 C3C D:HAS603 4.3 34.2 1.0 C2A D:HAS603 4.3 33.9 1.0 C2C D:HAS603 4.4 34.0 1.0 C2B D:HAS603 4.4 36.1 1.0 C3A D:HAS603 4.4 33.8 1.0 CG D:HIS400 4.4 26.2 1.0 C3B D:HAS603 4.4 37.1 1.0 C3D D:HAS603 4.4 34.2 1.0 ND1 D:HIS400 4.4 26.7 1.0 ND1 D:HIS87 4.5 18.3 1.0 CG D:HIS87 4.7 18.8 1.0 CZ D:PHE447 5.0 32.1 1.0

Iron binding site 3 out of 16 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:15.8 occ:1.00 FE1 A:FES501 0.0 15.8 1.0 S2 A:FES501 2.2 16.0 1.0 S1 A:FES501 2.2 16.0 1.0 ND1 A:HIS355 2.4 26.2 1.0 ND1 A:HIS335 2.4 18.7 1.0 CG A:HIS355 3.0 26.0 1.0 CB A:HIS355 3.0 25.7 1.0 FE2 A:FES501 3.0 16.7 1.0 CE1 A:HIS335 3.3 18.4 1.0 CE1 A:HIS355 3.4 26.4 1.0 CG A:HIS335 3.5 19.1 1.0 N A:HIS355 3.7 24.9 1.0 CB A:HIS335 3.7 19.6 1.0 CA A:HIS355 3.8 25.4 1.0 O A:HIS355 4.0 26.0 1.0 CD2 A:HIS355 4.2 26.4 1.0 C A:HIS355 4.3 25.9 1.0 NE2 A:HIS355 4.4 26.4 1.0 SG A:CYS352 4.4 20.4 1.0 N A:ILE336 4.4 21.4 1.0 CB A:CYS354 4.4 25.2 1.0 CG1 A:ILE336 4.5 22.8 1.0 NE2 A:HIS335 4.5 18.8 1.0 SG A:CYS333 4.6 17.7 1.0 CD2 A:HIS335 4.6 19.1 1.0 CB A:ILE336 4.6 22.3 1.0 C A:CYS354 4.7 24.3 1.0 OG A:SER357 4.7 24.6 1.0 CD1 A:ILE336 4.8 23.0 1.0 CA A:HIS335 4.9 20.5 1.0 CG A:PRO371 5.0 24.2 1.0

Iron binding site 4 out of 16 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:16.7 occ:1.00 FE2 A:FES501 0.0 16.7 1.0 SG A:CYS352 2.1 20.4 1.0 S1 A:FES501 2.2 16.0 1.0 S2 A:FES501 2.2 16.0 1.0 SG A:CYS333 2.3 17.7 1.0 CB A:CYS333 2.8 18.5 1.0 FE1 A:FES501 3.0 15.8 1.0 CB A:CYS352 3.2 20.9 1.0 CB A:CYS338 4.1 25.8 1.0 O A:HIS355 4.2 26.0 1.0 CG2 A:THR340 4.2 26.5 1.0 CA A:CYS333 4.3 19.2 1.0 CB A:HIS335 4.3 19.6 1.0 O A:CYS338 4.5 24.4 1.0 CA A:CYS352 4.6 21.8 1.0 OG A:SER357 4.6 24.6 1.0 N A:CYS338 4.6 23.8 1.0 N A:HIS355 4.7 24.9 1.0 CB A:CYS354 4.8 25.2 1.0 ND1 A:HIS335 4.8 18.7 1.0 CA A:CYS338 4.8 24.6 1.0 N A:ILE336 4.8 21.4 1.0 ND1 A:HIS355 4.9 26.2 1.0 C A:CYS338 4.9 24.4 1.0 C A:CYS333 5.0 19.3 1.0

Iron binding site 5 out of 16 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:12.0 occ:1.00 FE B:HEM601 0.0 12.0 1.0 ND B:HEM601 1.9 12.1 1.0 NA B:HEM601 2.0 12.1 1.0 NC B:HEM601 2.1 12.1 1.0 NB B:HEM601 2.1 11.9 1.0 NE2 B:HIS103 2.4 11.1 1.0 NE2 B:HIS204 2.4 12.8 1.0 C4D B:HEM601 2.8 12.1 1.0 C1A B:HEM601 2.9 12.0 1.0 C1D B:HEM601 2.9 12.1 1.0 C4C B:HEM601 3.1 12.2 1.0 C4A B:HEM601 3.1 11.9 1.0 C4B B:HEM601 3.1 12.0 1.0 C1B B:HEM601 3.1 11.8 1.0 CD2 B:HIS103 3.1 11.3 1.0 C1C B:HEM601 3.1 12.1 1.0 CE1 B:HIS204 3.2 13.0 1.0 CHA B:HEM601 3.2 11.9 1.0 CE1 B:HIS103 3.5 11.3 1.0 CHD B:HEM601 3.5 12.0 1.0 CHB B:HEM601 3.5 11.9 1.0 CHC B:HEM601 3.5 12.1 1.0 CD2 B:HIS204 3.5 13.1 1.0 C3D B:HEM601 4.1 12.3 1.0 C2A B:HEM601 4.1 12.0 1.0 C2D B:HEM601 4.2 12.2 1.0 C3A B:HEM601 4.2 11.9 1.0 C3C B:HEM601 4.2 12.3 1.0 C2C B:HEM601 4.3 12.2 1.0 CG B:HIS103 4.3 11.5 1.0 C2B B:HEM601 4.3 11.9 1.0 ND1 B:HIS204 4.3 13.3 1.0 C3B B:HEM601 4.4 12.0 1.0 ND1 B:HIS103 4.4 11.4 1.0 CG B:HIS204 4.6 13.4 1.0 CA B:GLY152 4.9 23.2 1.0

Iron binding site 6 out of 16 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe602 b:15.7 occ:1.00 FE B:HEM602 0.0 15.7 1.0 ND B:HEM602 1.9 15.8 1.0 NA B:HEM602 2.0 16.0 1.0 NC B:HEM602 2.1 15.7 1.0 NB B:HEM602 2.1 15.7 1.0 NE2 B:HIS117 2.4 14.7 1.0 NE2 B:HIS219 2.5 20.1 1.0 C4D B:HEM602 2.8 16.0 1.0 C1A B:HEM602 2.9 16.2 1.0 CD2 B:HIS117 2.9 14.5 1.0 C1D B:HEM602 2.9 15.7 1.0 C4A B:HEM602 3.0 16.2 1.0 C4C B:HEM602 3.1 15.5 1.0 C4B B:HEM602 3.1 15.7 1.0 C1C B:HEM602 3.1 15.6 1.0 C1B B:HEM602 3.1 15.7 1.0 CHA B:HEM602 3.2 16.1 1.0 CD2 B:HIS219 3.3 20.1 1.0 CHD B:HEM602 3.4 15.4 1.0 CHC B:HEM602 3.5 15.7 1.0 CHB B:HEM602 3.5 15.8 1.0 CE1 B:HIS219 3.6 20.5 1.0 CE1 B:HIS117 3.6 14.8 1.0 C3D B:HEM602 4.1 16.1 1.0 C2A B:HEM602 4.1 16.6 1.0 C2D B:HEM602 4.2 15.9 1.0 C3A B:HEM602 4.2 16.4 1.0 CG B:HIS117 4.2 14.6 1.0 C3C B:HEM602 4.2 15.4 1.0 C2C B:HEM602 4.2 15.5 1.0 C2B B:HEM602 4.3 15.7 1.0 C3B B:HEM602 4.3 15.8 1.0 CG B:HIS219 4.5 20.3 1.0 ND1 B:HIS117 4.5 14.8 1.0 ND1 B:HIS219 4.6 20.7 1.0

Iron binding site 7 out of 16 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe302 b:25.4 occ:1.00 FE C:HEC302 0.0 25.4 1.0 NB C:HEC302 2.1 25.7 1.0 ND C:HEC302 2.1 25.8 1.0 NC C:HEC302 2.1 25.8 1.0 NA C:HEC302 2.1 26.0 1.0 NE2 C:HIS71 2.5 33.8 1.0 SD C:MET102 2.9 24.6 1.0 C1B C:HEC302 3.1 25.5 1.0 C1D C:HEC302 3.1 25.8 1.0 C4A C:HEC302 3.1 25.9 1.0 C1C C:HEC302 3.1 25.7 1.0 C4C C:HEC302 3.1 25.7 1.0 C4B C:HEC302 3.1 25.4 1.0 C4D C:HEC302 3.1 25.8 1.0 C1A C:HEC302 3.1 26.4 1.0 CD2 C:HIS71 3.3 34.0 1.0 CE1 C:HIS71 3.3 34.0 1.0 CHB C:HEC302 3.4 25.4 1.0 CHD C:HEC302 3.4 25.4 1.0 CHC C:HEC302 3.5 25.1 1.0 CHA C:HEC302 3.5 26.2 1.0 CG C:MET102 3.8 25.2 1.0 CE C:MET102 3.9 24.6 1.0 CG C:HIS71 4.4 34.3 1.0 C3C C:HEC302 4.4 26.2 1.0 ND1 C:HIS71 4.4 34.2 1.0 C3B C:HEC302 4.4 25.4 1.0 C2B C:HEC302 4.4 25.6 1.0 C2C C:HEC302 4.4 26.2 1.0 C2D C:HEC302 4.4 25.6 1.0 C3A C:HEC302 4.4 26.2 1.0 C3D C:HEC302 4.4 25.4 1.0 C2A C:HEC302 4.4 26.4 1.0 CB C:MET102 4.9 25.1 1.0

Iron binding site 8 out of 16 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe303 b:20.3 occ:1.00 FE C:HEC303 0.0 20.3 1.0 ND C:HEC303 2.1 20.6 1.0 NB C:HEC303 2.1 20.0 1.0 NC C:HEC303 2.1 20.2 1.0 NA C:HEC303 2.1 20.5 1.0 NE2 C:HIS181 2.3 21.4 1.0 C1C C:HEC303 3.1 20.1 1.0 C4D C:HEC303 3.1 20.9 1.0 C1A C:HEC303 3.1 20.8 1.0 C4B C:HEC303 3.1 19.8 1.0 C1B C:HEC303 3.1 19.9 1.0 CE1 C:HIS181 3.1 21.2 1.0 C4C C:HEC303 3.1 20.1 1.0 C4A C:HEC303 3.1 20.4 1.0 C1D C:HEC303 3.1 20.6 1.0 SD C:MET218 3.1 24.2 1.0 CHC C:HEC303 3.3 20.0 1.0 CHA C:HEC303 3.4 20.7 1.0 CHD C:HEC303 3.4 20.3 1.0 CHB C:HEC303 3.4 20.0 1.0 CD2 C:HIS181 3.5 22.2 1.0 CE C:MET218 3.5 24.6 1.0 CG C:MET218 3.6 24.6 1.0 CB C:MET218 4.3 24.7 1.0 ND1 C:HIS181 4.3 22.2 1.0 C3C C:HEC303 4.4 20.1 1.0 C2C C:HEC303 4.4 20.1 1.0 C3D C:HEC303 4.4 21.0 1.0 C2A C:HEC303 4.4 21.0 1.0 C2B C:HEC303 4.4 19.9 1.0 C3B C:HEC303 4.4 19.9 1.0 C2D C:HEC303 4.4 20.6 1.0 C3A C:HEC303 4.4 20.6 1.0 CG C:HIS181 4.5 22.8 1.0

Iron binding site 9 out of 16 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ d:Fe603 b:47.5 occ:1.00 FE d:HAS603 0.0 47.5 1.0 NA d:HAS603 2.1 47.4 1.0 NB d:HAS603 2.1 48.8 1.0 ND d:HAS603 2.1 48.6 1.0 NC d:HAS603 2.1 47.3 1.0 C1A d:HAS603 3.1 47.8 1.0 C1D d:HAS603 3.1 49.4 1.0 C4B d:HAS603 3.1 49.3 1.0 C4C d:HAS603 3.1 47.0 1.0 C1B d:HAS603 3.1 49.1 1.0 C4A d:HAS603 3.1 46.8 1.0 C1C d:HAS603 3.1 47.6 1.0 C4D d:HAS603 3.1 49.9 1.0 NE2 d:HIS398 3.1 35.6 1.0 CHA d:HAS603 3.3 49.7 1.0 CHC d:HAS603 3.3 49.0 1.0 CHB d:HAS603 3.3 49.7 1.0 CHD d:HAS603 3.3 47.5 1.0 CD2 d:HIS398 4.0 36.0 1.0 CE1 d:HIS398 4.0 35.8 1.0 C2D d:HAS603 4.4 50.3 1.0 C3C d:HAS603 4.4 46.6 1.0 C2A d:HAS603 4.4 47.9 1.0 C3B d:HAS603 4.4 50.2 1.0 C3A d:HAS603 4.4 46.8 1.0 C2B d:HAS603 4.4 49.0 1.0 C2C d:HAS603 4.4 46.8 1.0 C3D d:HAS603 4.4 51.0 1.0 CU d:CU605 4.8 46.0 1.0 CE1 d:HIS315 4.9 39.8 1.0 CE1 d:HIS265 4.9 50.6 1.0

Iron binding site 10 out of 16 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ d:Fe604 b:41.5 occ:1.00 FE d:HAS604 0.0 41.5 1.0 NB d:HAS604 2.0 42.8 1.0 NC d:HAS604 2.0 42.7 1.0 NA d:HAS604 2.0 41.7 1.0 ND d:HAS604 2.1 42.4 1.0 NE2 d:HIS400 2.3 35.2 1.0 NE2 d:HIS87 2.4 27.1 1.0 C1C d:HAS604 3.0 43.2 1.0 C4D d:HAS604 3.0 42.4 1.0 C1A d:HAS604 3.0 41.4 1.0 C1B d:HAS604 3.0 43.0 1.0 C4B d:HAS604 3.0 43.4 1.0 C4C d:HAS604 3.0 42.6 1.0 C1D d:HAS604 3.1 42.1 1.0 C4A d:HAS604 3.1 41.8 1.0 CD2 d:HIS400 3.2 35.5 1.0 CE1 d:HIS87 3.2 27.2 1.0 CHC d:HAS604 3.4 43.8 1.0 CHA d:HAS604 3.4 41.5 1.0 CHB d:HAS604 3.4 42.3 1.0 CE1 d:HIS400 3.4 36.0 1.0 CHD d:HAS604 3.4 42.3 1.0 CD2 d:HIS87 3.5 27.6 1.0 C3D d:HAS604 4.3 42.3 1.0 C2C d:HAS604 4.3 42.7 1.0 C3C d:HAS604 4.3 42.8 1.0 C2A d:HAS604 4.3 41.1 1.0 C2B d:HAS604 4.3 43.9 1.0 C2D d:HAS604 4.3 42.2 1.0 C3B d:HAS604 4.3 45.0 1.0 C3A d:HAS604 4.4 41.0 1.0 CG d:HIS400 4.4 36.0 1.0 ND1 d:HIS87 4.4 27.9 1.0 ND1 d:HIS400 4.5 36.6 1.0 CG d:HIS87 4.6 28.3 1.0 CZ d:PHE447 4.9 43.3 1.0 CB d:ALA60 4.9 37.2 1.0

A.Moe, T.Kovalova, S.Krol, D.J.Yanofsky, M.Bott, D.Sjostrand, J.L.Rubinstein, M.Hogbom, P.Brzezinski. The Respiratory Supercomplex From C. Glutamicum. Structure V. 30 338 2022.
ISSN: ISSN 0969-2126
PubMed: 34910901
DOI: 10.1016/J.STR.2021.11.008