Iron in PDB 7q4v: Electron Bifurcating Hydrogenase - Hydabc From A. Woodii
Enzymatic activity of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii
All present enzymatic activity of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii:
1.12.7.2;
Other elements in 7q4v:
The structure of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii also contains other interesting chemical elements:
Iron Binding Sites:
Iron binding site 1 out
of 66 in 7q4v
Go back to
Iron Binding Sites List in 7q4v
Iron binding site 1 out
of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:123.1
occ:1.00
|
FE1
|
A:SF4601
|
0.0
|
123.1
|
1.0
|
SG
|
A:CYS197
|
2.3
|
114.6
|
1.0
|
S3
|
A:SF4601
|
2.3
|
123.1
|
1.0
|
S4
|
A:SF4601
|
2.3
|
123.1
|
1.0
|
S2
|
A:SF4601
|
2.3
|
123.1
|
1.0
|
FE2
|
A:SF4601
|
2.7
|
123.1
|
1.0
|
FE4
|
A:SF4601
|
2.7
|
123.1
|
1.0
|
FE3
|
A:SF4601
|
2.7
|
123.1
|
1.0
|
CB
|
A:CYS197
|
2.8
|
114.6
|
1.0
|
S1
|
A:SF4601
|
3.9
|
123.1
|
1.0
|
SG
|
A:CYS194
|
4.0
|
116.2
|
1.0
|
CA
|
A:CYS197
|
4.1
|
114.6
|
1.0
|
N
|
A:CYS197
|
4.1
|
114.6
|
1.0
|
SG
|
A:CYS191
|
4.6
|
128.7
|
1.0
|
SG
|
A:CYS158
|
4.6
|
105.6
|
1.0
|
|
Iron binding site 2 out
of 66 in 7q4v
Go back to
Iron Binding Sites List in 7q4v
Iron binding site 2 out
of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:123.1
occ:1.00
|
FE2
|
A:SF4601
|
0.0
|
123.1
|
1.0
|
SG
|
A:CYS194
|
2.3
|
116.2
|
1.0
|
S3
|
A:SF4601
|
2.3
|
123.1
|
1.0
|
S4
|
A:SF4601
|
2.3
|
123.1
|
1.0
|
S1
|
A:SF4601
|
2.3
|
123.1
|
1.0
|
FE1
|
A:SF4601
|
2.7
|
123.1
|
1.0
|
FE3
|
A:SF4601
|
2.7
|
123.1
|
1.0
|
FE4
|
A:SF4601
|
2.7
|
123.1
|
1.0
|
NE2
|
A:GLN162
|
2.8
|
132.6
|
1.0
|
CB
|
A:CYS194
|
3.1
|
116.2
|
1.0
|
N
|
A:CYS194
|
3.5
|
116.2
|
1.0
|
CD
|
A:GLN162
|
3.5
|
132.6
|
1.0
|
CA
|
A:CYS194
|
3.8
|
116.2
|
1.0
|
S2
|
A:SF4601
|
3.9
|
123.1
|
1.0
|
OE1
|
A:GLN162
|
4.1
|
132.6
|
1.0
|
N
|
A:GLY195
|
4.2
|
112.3
|
1.0
|
SG
|
A:CYS197
|
4.4
|
114.6
|
1.0
|
CG
|
A:GLN162
|
4.4
|
132.6
|
1.0
|
N
|
A:ASN193
|
4.5
|
127.8
|
1.0
|
C
|
A:CYS194
|
4.6
|
116.2
|
1.0
|
C
|
A:ASN193
|
4.6
|
127.8
|
1.0
|
CB
|
A:ILE192
|
4.7
|
118.5
|
1.0
|
SG
|
A:CYS158
|
4.7
|
105.6
|
1.0
|
SG
|
A:CYS191
|
4.8
|
128.7
|
1.0
|
CB
|
A:CYS197
|
4.9
|
114.6
|
1.0
|
N
|
A:ILE192
|
4.9
|
118.5
|
1.0
|
CA
|
A:ASN193
|
4.9
|
127.8
|
1.0
|
N
|
A:CYS197
|
4.9
|
114.6
|
1.0
|
N
|
A:GLN196
|
5.0
|
101.4
|
1.0
|
|
Iron binding site 3 out
of 66 in 7q4v
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Iron Binding Sites List in 7q4v
Iron binding site 3 out
of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:123.1
occ:1.00
|
FE3
|
A:SF4601
|
0.0
|
123.1
|
1.0
|
SG
|
A:CYS158
|
2.3
|
105.6
|
1.0
|
S4
|
A:SF4601
|
2.3
|
123.1
|
1.0
|
S1
|
A:SF4601
|
2.3
|
123.1
|
1.0
|
S2
|
A:SF4601
|
2.3
|
123.1
|
1.0
|
FE2
|
A:SF4601
|
2.7
|
123.1
|
1.0
|
FE1
|
A:SF4601
|
2.7
|
123.1
|
1.0
|
FE4
|
A:SF4601
|
2.7
|
123.1
|
1.0
|
CB
|
A:CYS158
|
3.4
|
105.6
|
1.0
|
S3
|
A:SF4601
|
3.9
|
123.1
|
1.0
|
NE2
|
A:GLN162
|
4.0
|
132.6
|
1.0
|
CA
|
A:CYS158
|
4.4
|
105.6
|
1.0
|
CG2
|
A:VAL166
|
4.4
|
123.6
|
1.0
|
CD
|
A:GLN162
|
4.6
|
132.6
|
1.0
|
CG
|
A:GLN162
|
4.6
|
132.6
|
1.0
|
SG
|
A:CYS194
|
4.7
|
116.2
|
1.0
|
CB
|
A:VAL164
|
4.9
|
116.6
|
1.0
|
SG
|
A:CYS191
|
4.9
|
128.7
|
1.0
|
CG1
|
A:VAL164
|
4.9
|
116.6
|
1.0
|
CB
|
A:CYS197
|
4.9
|
114.6
|
1.0
|
SG
|
A:CYS197
|
4.9
|
114.6
|
1.0
|
|
Iron binding site 4 out
of 66 in 7q4v
Go back to
Iron Binding Sites List in 7q4v
Iron binding site 4 out
of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:123.1
occ:1.00
|
FE4
|
A:SF4601
|
0.0
|
123.1
|
1.0
|
SG
|
A:CYS191
|
2.3
|
128.7
|
1.0
|
S3
|
A:SF4601
|
2.3
|
123.1
|
1.0
|
S2
|
A:SF4601
|
2.3
|
123.1
|
1.0
|
S1
|
A:SF4601
|
2.3
|
123.1
|
1.0
|
FE1
|
A:SF4601
|
2.7
|
123.1
|
1.0
|
FE2
|
A:SF4601
|
2.7
|
123.1
|
1.0
|
FE3
|
A:SF4601
|
2.7
|
123.1
|
1.0
|
CB
|
A:CYS191
|
3.5
|
128.7
|
1.0
|
N
|
A:ILE192
|
3.6
|
118.5
|
1.0
|
N
|
A:ASN193
|
3.8
|
127.8
|
1.0
|
S4
|
A:SF4601
|
3.9
|
123.1
|
1.0
|
CA
|
A:CYS191
|
3.9
|
128.7
|
1.0
|
C
|
A:CYS191
|
4.1
|
128.7
|
1.0
|
CA
|
A:ASN193
|
4.4
|
127.8
|
1.0
|
N
|
A:CYS194
|
4.5
|
116.2
|
1.0
|
CA
|
A:ILE192
|
4.6
|
118.5
|
1.0
|
SG
|
A:CYS197
|
4.6
|
114.6
|
1.0
|
C
|
A:ILE192
|
4.6
|
118.5
|
1.0
|
SG
|
A:CYS194
|
4.8
|
116.2
|
1.0
|
CB
|
A:ILE192
|
4.9
|
118.5
|
1.0
|
SG
|
A:CYS158
|
4.9
|
105.6
|
1.0
|
CG2
|
A:VAL166
|
5.0
|
123.6
|
1.0
|
|
Iron binding site 5 out
of 66 in 7q4v
Go back to
Iron Binding Sites List in 7q4v
Iron binding site 5 out
of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:73.2
occ:1.00
|
FE1
|
A:SF4602
|
0.0
|
73.2
|
1.0
|
SG
|
A:CYS154
|
2.3
|
69.5
|
1.0
|
S4
|
A:SF4602
|
2.3
|
73.2
|
1.0
|
S2
|
A:SF4602
|
2.3
|
73.2
|
1.0
|
S3
|
A:SF4602
|
2.3
|
73.2
|
1.0
|
FE3
|
A:SF4602
|
2.7
|
73.2
|
1.0
|
FE4
|
A:SF4602
|
2.7
|
73.2
|
1.0
|
FE2
|
A:SF4602
|
2.7
|
73.2
|
1.0
|
CB
|
A:CYS154
|
3.0
|
69.5
|
1.0
|
SG
|
A:CYS151
|
3.1
|
60.0
|
1.0
|
N
|
A:CYS154
|
3.8
|
69.5
|
1.0
|
S1
|
A:SF4602
|
3.9
|
73.2
|
1.0
|
CA
|
A:CYS154
|
4.0
|
69.5
|
1.0
|
N
|
A:LYS152
|
4.4
|
72.8
|
1.0
|
N
|
A:ARG153
|
4.5
|
78.9
|
1.0
|
SG
|
A:CYS148
|
4.6
|
70.7
|
1.0
|
CB
|
A:CYS151
|
4.6
|
60.0
|
1.0
|
CG1
|
A:VAL178
|
4.7
|
137.0
|
1.0
|
N
|
A:CYS151
|
4.8
|
60.0
|
1.0
|
CA
|
A:LYS152
|
4.8
|
72.8
|
1.0
|
N
|
A:VAL155
|
4.9
|
90.8
|
1.0
|
SG
|
A:CYS201
|
4.9
|
87.7
|
1.0
|
C
|
A:ARG153
|
5.0
|
78.9
|
1.0
|
C
|
A:LYS152
|
5.0
|
72.8
|
1.0
|
C
|
A:CYS154
|
5.0
|
69.5
|
1.0
|
|
Iron binding site 6 out
of 66 in 7q4v
Go back to
Iron Binding Sites List in 7q4v
Iron binding site 6 out
of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:73.2
occ:1.00
|
FE2
|
A:SF4602
|
0.0
|
73.2
|
1.0
|
SG
|
A:CYS151
|
2.2
|
60.0
|
1.0
|
S3
|
A:SF4602
|
2.3
|
73.2
|
1.0
|
S1
|
A:SF4602
|
2.3
|
73.2
|
1.0
|
S4
|
A:SF4602
|
2.3
|
73.2
|
1.0
|
FE4
|
A:SF4602
|
2.7
|
73.2
|
1.0
|
FE3
|
A:SF4602
|
2.7
|
73.2
|
1.0
|
FE1
|
A:SF4602
|
2.7
|
73.2
|
1.0
|
N
|
A:CYS151
|
2.8
|
60.0
|
1.0
|
CB
|
A:CYS151
|
2.8
|
60.0
|
1.0
|
CA
|
A:CYS151
|
3.3
|
60.0
|
1.0
|
N
|
A:LEU150
|
3.9
|
67.5
|
1.0
|
S2
|
A:SF4602
|
3.9
|
73.2
|
1.0
|
C
|
A:LEU150
|
3.9
|
67.5
|
1.0
|
N
|
A:LYS152
|
3.9
|
72.8
|
1.0
|
SG
|
A:CYS148
|
4.0
|
70.7
|
1.0
|
C
|
A:CYS151
|
4.1
|
60.0
|
1.0
|
CA
|
A:LEU150
|
4.2
|
67.5
|
1.0
|
N
|
A:ILE149
|
4.4
|
62.5
|
1.0
|
C
|
A:ILE149
|
4.5
|
62.5
|
1.0
|
SG
|
A:CYS201
|
4.7
|
87.7
|
1.0
|
CG1
|
A:ILE149
|
4.8
|
62.5
|
1.0
|
SG
|
A:CYS154
|
4.9
|
69.5
|
1.0
|
CD
|
A:PRO202
|
4.9
|
75.0
|
1.0
|
N
|
A:ARG153
|
4.9
|
78.9
|
1.0
|
O
|
A:LEU150
|
5.0
|
67.5
|
1.0
|
|
Iron binding site 7 out
of 66 in 7q4v
Go back to
Iron Binding Sites List in 7q4v
Iron binding site 7 out
of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:73.2
occ:1.00
|
FE3
|
A:SF4602
|
0.0
|
73.2
|
1.0
|
SG
|
A:CYS201
|
2.3
|
87.7
|
1.0
|
S1
|
A:SF4602
|
2.3
|
73.2
|
1.0
|
S4
|
A:SF4602
|
2.3
|
73.2
|
1.0
|
S2
|
A:SF4602
|
2.3
|
73.2
|
1.0
|
FE4
|
A:SF4602
|
2.7
|
73.2
|
1.0
|
FE1
|
A:SF4602
|
2.7
|
73.2
|
1.0
|
FE2
|
A:SF4602
|
2.7
|
73.2
|
1.0
|
CB
|
A:CYS201
|
3.3
|
87.7
|
1.0
|
SG
|
A:CYS151
|
3.6
|
60.0
|
1.0
|
CB
|
A:ALA205
|
3.9
|
95.3
|
1.0
|
S3
|
A:SF4602
|
3.9
|
73.2
|
1.0
|
CA
|
A:CYS201
|
4.0
|
87.7
|
1.0
|
CD
|
A:PRO202
|
4.2
|
75.0
|
1.0
|
CB
|
A:CYS154
|
4.7
|
69.5
|
1.0
|
SG
|
A:CYS154
|
4.7
|
69.5
|
1.0
|
CG2
|
A:VAL203
|
4.8
|
83.5
|
1.0
|
C
|
A:CYS201
|
4.8
|
87.7
|
1.0
|
CB
|
A:CYS151
|
4.8
|
60.0
|
1.0
|
N
|
A:PRO202
|
4.8
|
75.0
|
1.0
|
SG
|
A:CYS148
|
4.8
|
70.7
|
1.0
|
N
|
A:ALA205
|
4.9
|
95.3
|
1.0
|
|
Iron binding site 8 out
of 66 in 7q4v
Go back to
Iron Binding Sites List in 7q4v
Iron binding site 8 out
of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:73.2
occ:1.00
|
FE4
|
A:SF4602
|
0.0
|
73.2
|
1.0
|
SG
|
A:CYS148
|
2.2
|
70.7
|
1.0
|
S1
|
A:SF4602
|
2.3
|
73.2
|
1.0
|
S3
|
A:SF4602
|
2.3
|
73.2
|
1.0
|
S2
|
A:SF4602
|
2.3
|
73.2
|
1.0
|
FE2
|
A:SF4602
|
2.7
|
73.2
|
1.0
|
FE3
|
A:SF4602
|
2.7
|
73.2
|
1.0
|
FE1
|
A:SF4602
|
2.7
|
73.2
|
1.0
|
CB
|
A:CYS148
|
3.2
|
70.7
|
1.0
|
CB
|
A:ALA205
|
3.8
|
95.3
|
1.0
|
S4
|
A:SF4602
|
3.9
|
73.2
|
1.0
|
CA
|
A:CYS148
|
3.9
|
70.7
|
1.0
|
CG1
|
A:VAL178
|
4.2
|
137.0
|
1.0
|
N
|
A:ILE149
|
4.4
|
62.5
|
1.0
|
C
|
A:CYS148
|
4.5
|
70.7
|
1.0
|
N
|
A:LEU150
|
4.6
|
67.5
|
1.0
|
SG
|
A:CYS151
|
4.6
|
60.0
|
1.0
|
SG
|
A:CYS154
|
4.6
|
69.5
|
1.0
|
SG
|
A:CYS201
|
4.6
|
87.7
|
1.0
|
N
|
A:CYS151
|
4.9
|
60.0
|
1.0
|
|
Iron binding site 9 out
of 66 in 7q4v
Go back to
Iron Binding Sites List in 7q4v
Iron binding site 9 out
of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:98.3
occ:1.00
|
FE1
|
A:SF4603
|
0.0
|
98.3
|
1.0
|
S3
|
A:SF4603
|
2.3
|
98.3
|
1.0
|
SG
|
A:CYS103
|
2.3
|
115.0
|
1.0
|
S4
|
A:SF4603
|
2.3
|
98.3
|
1.0
|
S2
|
A:SF4603
|
2.3
|
98.3
|
1.0
|
FE2
|
A:SF4603
|
2.7
|
98.3
|
1.0
|
FE4
|
A:SF4603
|
2.7
|
98.3
|
1.0
|
FE3
|
A:SF4603
|
2.7
|
98.3
|
1.0
|
CB
|
A:CYS103
|
3.2
|
115.0
|
1.0
|
NZ
|
A:LYS147
|
3.2
|
103.1
|
1.0
|
CE
|
A:LYS147
|
3.3
|
103.1
|
1.0
|
O
|
A:VAL203
|
3.6
|
83.5
|
1.0
|
S1
|
A:SF4603
|
3.9
|
98.3
|
1.0
|
NE2
|
A:HIS96
|
4.3
|
114.2
|
1.0
|
SG
|
A:CYS100
|
4.3
|
97.0
|
1.0
|
SG
|
A:CYS109
|
4.5
|
97.7
|
1.0
|
CB
|
A:ARG105
|
4.5
|
110.9
|
1.0
|
CA
|
A:CYS103
|
4.5
|
115.0
|
1.0
|
CD
|
A:LYS147
|
4.6
|
103.1
|
1.0
|
C
|
A:VAL203
|
4.6
|
83.5
|
1.0
|
CB
|
A:CYS109
|
4.7
|
97.7
|
1.0
|
CE1
|
A:HIS96
|
4.8
|
114.2
|
1.0
|
N
|
A:SER106
|
5.0
|
108.7
|
1.0
|
OE1
|
A:GLN112
|
5.0
|
109.6
|
1.0
|
|
Iron binding site 10 out
of 66 in 7q4v
Go back to
Iron Binding Sites List in 7q4v
Iron binding site 10 out
of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:98.3
occ:1.00
|
FE2
|
A:SF4603
|
0.0
|
98.3
|
1.0
|
SG
|
A:CYS100
|
2.2
|
97.0
|
1.0
|
S4
|
A:SF4603
|
2.3
|
98.3
|
1.0
|
S3
|
A:SF4603
|
2.3
|
98.3
|
1.0
|
S1
|
A:SF4603
|
2.3
|
98.3
|
1.0
|
CB
|
A:CYS100
|
2.6
|
97.0
|
1.0
|
FE1
|
A:SF4603
|
2.7
|
98.3
|
1.0
|
FE3
|
A:SF4603
|
2.7
|
98.3
|
1.0
|
FE4
|
A:SF4603
|
2.7
|
98.3
|
1.0
|
OE1
|
A:GLN112
|
2.9
|
109.6
|
1.0
|
CA
|
A:CYS100
|
3.1
|
97.0
|
1.0
|
CB
|
A:CYS103
|
3.3
|
115.0
|
1.0
|
O
|
A:CYS100
|
3.7
|
97.0
|
1.0
|
SG
|
A:CYS103
|
3.8
|
115.0
|
1.0
|
S2
|
A:SF4603
|
3.9
|
98.3
|
1.0
|
C
|
A:CYS100
|
3.9
|
97.0
|
1.0
|
CD
|
A:GLN112
|
4.1
|
109.6
|
1.0
|
N
|
A:CYS100
|
4.2
|
97.0
|
1.0
|
CA
|
A:CYS103
|
4.7
|
115.0
|
1.0
|
CB
|
A:CYS109
|
4.8
|
97.7
|
1.0
|
CG
|
A:GLN112
|
4.8
|
109.6
|
1.0
|
SG
|
A:CYS109
|
4.8
|
97.7
|
1.0
|
N
|
A:SER106
|
4.8
|
108.7
|
1.0
|
CA
|
A:SER106
|
5.0
|
108.7
|
1.0
|
|
Reference:
A.Katsyv,
A.Kumar,
P.Saura,
M.C.Poeverlein,
S.A.Freibert,
S.Stripp,
S.Jain,
A.P.Gamiz-Hernandez,
V.R.I.Kaila,
V.Mueller,
J.M.Schuller.
Molecular Basis of A Novel Electron Bifurcation Mechanism in the Hydabc Complex To Be Published.
Page generated: Thu Aug 8 17:55:24 2024
|