Iron in PDB 7q4v: Electron Bifurcating Hydrogenase - Hydabc From A. Woodii

All present enzymatic activity of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii:
1.12.7.2;

The structure of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 66;

Binding sites:

The binding sites of Iron atom in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii (pdb code 7q4v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 66 binding sites of Iron where determined in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii, PDB code: 7q4v:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:123.1 occ:1.00 FE1 A:SF4601 0.0 123.1 1.0 SG A:CYS197 2.3 114.6 1.0 S3 A:SF4601 2.3 123.1 1.0 S4 A:SF4601 2.3 123.1 1.0 S2 A:SF4601 2.3 123.1 1.0 FE2 A:SF4601 2.7 123.1 1.0 FE4 A:SF4601 2.7 123.1 1.0 FE3 A:SF4601 2.7 123.1 1.0 CB A:CYS197 2.8 114.6 1.0 S1 A:SF4601 3.9 123.1 1.0 SG A:CYS194 4.0 116.2 1.0 CA A:CYS197 4.1 114.6 1.0 N A:CYS197 4.1 114.6 1.0 SG A:CYS191 4.6 128.7 1.0 SG A:CYS158 4.6 105.6 1.0

Iron binding site 2 out of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:123.1 occ:1.00 FE2 A:SF4601 0.0 123.1 1.0 SG A:CYS194 2.3 116.2 1.0 S3 A:SF4601 2.3 123.1 1.0 S4 A:SF4601 2.3 123.1 1.0 S1 A:SF4601 2.3 123.1 1.0 FE1 A:SF4601 2.7 123.1 1.0 FE3 A:SF4601 2.7 123.1 1.0 FE4 A:SF4601 2.7 123.1 1.0 NE2 A:GLN162 2.8 132.6 1.0 CB A:CYS194 3.1 116.2 1.0 N A:CYS194 3.5 116.2 1.0 CD A:GLN162 3.5 132.6 1.0 CA A:CYS194 3.8 116.2 1.0 S2 A:SF4601 3.9 123.1 1.0 OE1 A:GLN162 4.1 132.6 1.0 N A:GLY195 4.2 112.3 1.0 SG A:CYS197 4.4 114.6 1.0 CG A:GLN162 4.4 132.6 1.0 N A:ASN193 4.5 127.8 1.0 C A:CYS194 4.6 116.2 1.0 C A:ASN193 4.6 127.8 1.0 CB A:ILE192 4.7 118.5 1.0 SG A:CYS158 4.7 105.6 1.0 SG A:CYS191 4.8 128.7 1.0 CB A:CYS197 4.9 114.6 1.0 N A:ILE192 4.9 118.5 1.0 CA A:ASN193 4.9 127.8 1.0 N A:CYS197 4.9 114.6 1.0 N A:GLN196 5.0 101.4 1.0

Iron binding site 3 out of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:123.1 occ:1.00 FE3 A:SF4601 0.0 123.1 1.0 SG A:CYS158 2.3 105.6 1.0 S4 A:SF4601 2.3 123.1 1.0 S1 A:SF4601 2.3 123.1 1.0 S2 A:SF4601 2.3 123.1 1.0 FE2 A:SF4601 2.7 123.1 1.0 FE1 A:SF4601 2.7 123.1 1.0 FE4 A:SF4601 2.7 123.1 1.0 CB A:CYS158 3.4 105.6 1.0 S3 A:SF4601 3.9 123.1 1.0 NE2 A:GLN162 4.0 132.6 1.0 CA A:CYS158 4.4 105.6 1.0 CG2 A:VAL166 4.4 123.6 1.0 CD A:GLN162 4.6 132.6 1.0 CG A:GLN162 4.6 132.6 1.0 SG A:CYS194 4.7 116.2 1.0 CB A:VAL164 4.9 116.6 1.0 SG A:CYS191 4.9 128.7 1.0 CG1 A:VAL164 4.9 116.6 1.0 CB A:CYS197 4.9 114.6 1.0 SG A:CYS197 4.9 114.6 1.0

Iron binding site 4 out of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:123.1 occ:1.00 FE4 A:SF4601 0.0 123.1 1.0 SG A:CYS191 2.3 128.7 1.0 S3 A:SF4601 2.3 123.1 1.0 S2 A:SF4601 2.3 123.1 1.0 S1 A:SF4601 2.3 123.1 1.0 FE1 A:SF4601 2.7 123.1 1.0 FE2 A:SF4601 2.7 123.1 1.0 FE3 A:SF4601 2.7 123.1 1.0 CB A:CYS191 3.5 128.7 1.0 N A:ILE192 3.6 118.5 1.0 N A:ASN193 3.8 127.8 1.0 S4 A:SF4601 3.9 123.1 1.0 CA A:CYS191 3.9 128.7 1.0 C A:CYS191 4.1 128.7 1.0 CA A:ASN193 4.4 127.8 1.0 N A:CYS194 4.5 116.2 1.0 CA A:ILE192 4.6 118.5 1.0 SG A:CYS197 4.6 114.6 1.0 C A:ILE192 4.6 118.5 1.0 SG A:CYS194 4.8 116.2 1.0 CB A:ILE192 4.9 118.5 1.0 SG A:CYS158 4.9 105.6 1.0 CG2 A:VAL166 5.0 123.6 1.0

Iron binding site 5 out of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe602 b:73.2 occ:1.00 FE1 A:SF4602 0.0 73.2 1.0 SG A:CYS154 2.3 69.5 1.0 S4 A:SF4602 2.3 73.2 1.0 S2 A:SF4602 2.3 73.2 1.0 S3 A:SF4602 2.3 73.2 1.0 FE3 A:SF4602 2.7 73.2 1.0 FE4 A:SF4602 2.7 73.2 1.0 FE2 A:SF4602 2.7 73.2 1.0 CB A:CYS154 3.0 69.5 1.0 SG A:CYS151 3.1 60.0 1.0 N A:CYS154 3.8 69.5 1.0 S1 A:SF4602 3.9 73.2 1.0 CA A:CYS154 4.0 69.5 1.0 N A:LYS152 4.4 72.8 1.0 N A:ARG153 4.5 78.9 1.0 SG A:CYS148 4.6 70.7 1.0 CB A:CYS151 4.6 60.0 1.0 CG1 A:VAL178 4.7 137.0 1.0 N A:CYS151 4.8 60.0 1.0 CA A:LYS152 4.8 72.8 1.0 N A:VAL155 4.9 90.8 1.0 SG A:CYS201 4.9 87.7 1.0 C A:ARG153 5.0 78.9 1.0 C A:LYS152 5.0 72.8 1.0 C A:CYS154 5.0 69.5 1.0

Iron binding site 6 out of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe602 b:73.2 occ:1.00 FE2 A:SF4602 0.0 73.2 1.0 SG A:CYS151 2.2 60.0 1.0 S3 A:SF4602 2.3 73.2 1.0 S1 A:SF4602 2.3 73.2 1.0 S4 A:SF4602 2.3 73.2 1.0 FE4 A:SF4602 2.7 73.2 1.0 FE3 A:SF4602 2.7 73.2 1.0 FE1 A:SF4602 2.7 73.2 1.0 N A:CYS151 2.8 60.0 1.0 CB A:CYS151 2.8 60.0 1.0 CA A:CYS151 3.3 60.0 1.0 N A:LEU150 3.9 67.5 1.0 S2 A:SF4602 3.9 73.2 1.0 C A:LEU150 3.9 67.5 1.0 N A:LYS152 3.9 72.8 1.0 SG A:CYS148 4.0 70.7 1.0 C A:CYS151 4.1 60.0 1.0 CA A:LEU150 4.2 67.5 1.0 N A:ILE149 4.4 62.5 1.0 C A:ILE149 4.5 62.5 1.0 SG A:CYS201 4.7 87.7 1.0 CG1 A:ILE149 4.8 62.5 1.0 SG A:CYS154 4.9 69.5 1.0 CD A:PRO202 4.9 75.0 1.0 N A:ARG153 4.9 78.9 1.0 O A:LEU150 5.0 67.5 1.0

Iron binding site 7 out of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe602 b:73.2 occ:1.00 FE3 A:SF4602 0.0 73.2 1.0 SG A:CYS201 2.3 87.7 1.0 S1 A:SF4602 2.3 73.2 1.0 S4 A:SF4602 2.3 73.2 1.0 S2 A:SF4602 2.3 73.2 1.0 FE4 A:SF4602 2.7 73.2 1.0 FE1 A:SF4602 2.7 73.2 1.0 FE2 A:SF4602 2.7 73.2 1.0 CB A:CYS201 3.3 87.7 1.0 SG A:CYS151 3.6 60.0 1.0 CB A:ALA205 3.9 95.3 1.0 S3 A:SF4602 3.9 73.2 1.0 CA A:CYS201 4.0 87.7 1.0 CD A:PRO202 4.2 75.0 1.0 CB A:CYS154 4.7 69.5 1.0 SG A:CYS154 4.7 69.5 1.0 CG2 A:VAL203 4.8 83.5 1.0 C A:CYS201 4.8 87.7 1.0 CB A:CYS151 4.8 60.0 1.0 N A:PRO202 4.8 75.0 1.0 SG A:CYS148 4.8 70.7 1.0 N A:ALA205 4.9 95.3 1.0

Iron binding site 8 out of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe602 b:73.2 occ:1.00 FE4 A:SF4602 0.0 73.2 1.0 SG A:CYS148 2.2 70.7 1.0 S1 A:SF4602 2.3 73.2 1.0 S3 A:SF4602 2.3 73.2 1.0 S2 A:SF4602 2.3 73.2 1.0 FE2 A:SF4602 2.7 73.2 1.0 FE3 A:SF4602 2.7 73.2 1.0 FE1 A:SF4602 2.7 73.2 1.0 CB A:CYS148 3.2 70.7 1.0 CB A:ALA205 3.8 95.3 1.0 S4 A:SF4602 3.9 73.2 1.0 CA A:CYS148 3.9 70.7 1.0 CG1 A:VAL178 4.2 137.0 1.0 N A:ILE149 4.4 62.5 1.0 C A:CYS148 4.5 70.7 1.0 N A:LEU150 4.6 67.5 1.0 SG A:CYS151 4.6 60.0 1.0 SG A:CYS154 4.6 69.5 1.0 SG A:CYS201 4.6 87.7 1.0 N A:CYS151 4.9 60.0 1.0

Iron binding site 9 out of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe603 b:98.3 occ:1.00 FE1 A:SF4603 0.0 98.3 1.0 S3 A:SF4603 2.3 98.3 1.0 SG A:CYS103 2.3 115.0 1.0 S4 A:SF4603 2.3 98.3 1.0 S2 A:SF4603 2.3 98.3 1.0 FE2 A:SF4603 2.7 98.3 1.0 FE4 A:SF4603 2.7 98.3 1.0 FE3 A:SF4603 2.7 98.3 1.0 CB A:CYS103 3.2 115.0 1.0 NZ A:LYS147 3.2 103.1 1.0 CE A:LYS147 3.3 103.1 1.0 O A:VAL203 3.6 83.5 1.0 S1 A:SF4603 3.9 98.3 1.0 NE2 A:HIS96 4.3 114.2 1.0 SG A:CYS100 4.3 97.0 1.0 SG A:CYS109 4.5 97.7 1.0 CB A:ARG105 4.5 110.9 1.0 CA A:CYS103 4.5 115.0 1.0 CD A:LYS147 4.6 103.1 1.0 C A:VAL203 4.6 83.5 1.0 CB A:CYS109 4.7 97.7 1.0 CE1 A:HIS96 4.8 114.2 1.0 N A:SER106 5.0 108.7 1.0 OE1 A:GLN112 5.0 109.6 1.0

Iron binding site 10 out of 66 in the Electron Bifurcating Hydrogenase - Hydabc From A. Woodii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Electron Bifurcating Hydrogenase - Hydabc From A. Woodii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe603 b:98.3 occ:1.00 FE2 A:SF4603 0.0 98.3 1.0 SG A:CYS100 2.2 97.0 1.0 S4 A:SF4603 2.3 98.3 1.0 S3 A:SF4603 2.3 98.3 1.0 S1 A:SF4603 2.3 98.3 1.0 CB A:CYS100 2.6 97.0 1.0 FE1 A:SF4603 2.7 98.3 1.0 FE3 A:SF4603 2.7 98.3 1.0 FE4 A:SF4603 2.7 98.3 1.0 OE1 A:GLN112 2.9 109.6 1.0 CA A:CYS100 3.1 97.0 1.0 CB A:CYS103 3.3 115.0 1.0 O A:CYS100 3.7 97.0 1.0 SG A:CYS103 3.8 115.0 1.0 S2 A:SF4603 3.9 98.3 1.0 C A:CYS100 3.9 97.0 1.0 CD A:GLN112 4.1 109.6 1.0 N A:CYS100 4.2 97.0 1.0 CA A:CYS103 4.7 115.0 1.0 CB A:CYS109 4.8 97.7 1.0 CG A:GLN112 4.8 109.6 1.0 SG A:CYS109 4.8 97.7 1.0 N A:SER106 4.8 108.7 1.0 CA A:SER106 5.0 108.7 1.0

A.Katsyv, A.Kumar, P.Saura, M.C.Poeverlein, S.A.Freibert, S.Stripp, S.Jain, A.P.Gamiz-Hernandez, V.R.I.Kaila, V.Mueller, J.M.Schuller. Molecular Basis of A Novel Electron Bifurcation Mechanism in the Hydabc Complex To Be Published.