Atomistry » Iron » PDB 7pr2-7qhf » 7qbk
Atomistry »
  Iron »
    PDB 7pr2-7qhf »
      7qbk »

Iron in PDB 7qbk: Crystal Structure of A Second Homolog of R2-Like Ligand-Binding Oxidase in Sulfolobus Acidocaldarius (SAR2LOXII)

Protein crystallography data

The structure of Crystal Structure of A Second Homolog of R2-Like Ligand-Binding Oxidase in Sulfolobus Acidocaldarius (SAR2LOXII), PDB code: 7qbk was solved by H.Lebrette, R.Diamanti, V.Srinivas, M.Hogbom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.91 / 2.26
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 128.029, 128.029, 41.894, 90, 90, 120
R / Rfree (%) 20.2 / 23.9

Other elements in 7qbk:

The structure of Crystal Structure of A Second Homolog of R2-Like Ligand-Binding Oxidase in Sulfolobus Acidocaldarius (SAR2LOXII) also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of A Second Homolog of R2-Like Ligand-Binding Oxidase in Sulfolobus Acidocaldarius (SAR2LOXII) (pdb code 7qbk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of A Second Homolog of R2-Like Ligand-Binding Oxidase in Sulfolobus Acidocaldarius (SAR2LOXII), PDB code: 7qbk:

Iron binding site 1 out of 1 in 7qbk

Go back to Iron Binding Sites List in 7qbk
Iron binding site 1 out of 1 in the Crystal Structure of A Second Homolog of R2-Like Ligand-Binding Oxidase in Sulfolobus Acidocaldarius (SAR2LOXII)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Second Homolog of R2-Like Ligand-Binding Oxidase in Sulfolobus Acidocaldarius (SAR2LOXII) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:55.0
occ:0.35
OE2 A:GLU175 1.8 61.7 1.0
O A:HOH548 2.0 54.1 1.0
OE2 A:GLU108 2.2 54.4 1.0
ND1 A:HIS213 2.3 45.9 1.0
CD A:GLU175 2.6 57.0 1.0
MN A:MN3401 3.1 51.8 0.3
CE1 A:HIS213 3.1 43.8 1.0
CG A:GLU175 3.2 40.0 1.0
CD A:GLU108 3.3 49.5 1.0
CG A:HIS213 3.4 32.8 1.0
OE1 A:GLU175 3.5 72.3 1.0
OE1 A:GLU108 3.8 50.7 1.0
CB A:HIS213 3.8 35.4 1.0
CG A:GLU210 3.9 55.8 1.0
CB A:GLU210 4.2 41.1 1.0
CB A:GLU175 4.2 29.0 1.0
CA A:GLU210 4.2 38.7 1.0
CZ A:PHE104 4.3 42.5 1.0
NE2 A:HIS213 4.3 39.5 1.0
CE2 A:PHE104 4.4 49.9 1.0
CD2 A:HIS213 4.5 32.4 1.0
CE1 A:HIS111 4.6 37.4 1.0
CG A:GLU108 4.6 41.5 1.0
ND1 A:HIS111 4.6 34.7 1.0
OE1 A:GLU75 4.7 54.8 1.0
N A:GLU210 5.0 34.7 1.0

Reference:

R.Diamanti, V.Srinivas, A.I.Johansson, A.Nordstrom, J.J.Griese, H.Lebrette, M.Hogbom. Comparative Structural Analysis Provides New Insights Into the Function of R2-Like Ligand-Binding Oxidase. Febs Lett. V. 596 1600 2022.
ISSN: ISSN 0014-5793
PubMed: 35175627
DOI: 10.1002/1873-3468.14319
Page generated: Thu Aug 8 18:08:47 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy