Iron in PDB 7qh2: Cryo-Em Structure of Ldh-Etfab Complex From Acetobacterium Woodii

Enzymatic activity of Cryo-Em Structure of Ldh-Etfab Complex From Acetobacterium Woodii

All present enzymatic activity of Cryo-Em Structure of Ldh-Etfab Complex From Acetobacterium Woodii:
1.3.1.110;

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of Ldh-Etfab Complex From Acetobacterium Woodii (pdb code 7qh2). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Cryo-Em Structure of Ldh-Etfab Complex From Acetobacterium Woodii, PDB code: 7qh2:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7qh2

Go back to Iron Binding Sites List in 7qh2
Iron binding site 1 out of 2 in the Cryo-Em Structure of Ldh-Etfab Complex From Acetobacterium Woodii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Ldh-Etfab Complex From Acetobacterium Woodii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe502

b:88.0
occ:1.00
OE2 C:GLU422 1.7 65.9 1.0
NE2 C:HIS377 1.7 67.5 1.0
O C:HOH601 1.8 68.2 1.0
NE2 C:HIS384 1.9 64.9 1.0
CD C:GLU422 2.2 65.9 1.0
OE1 C:GLU422 2.3 65.9 1.0
CE1 C:HIS384 2.7 64.9 1.0
CE1 C:HIS377 2.7 67.5 1.0
CD2 C:HIS377 2.8 67.5 1.0
CD2 C:HIS384 3.1 64.9 1.0
OD1 C:ASN382 3.5 66.1 1.0
CG C:GLU422 3.7 65.9 1.0
ND1 C:HIS377 3.8 67.5 1.0
ND1 C:HIS384 3.9 64.9 1.0
CG C:HIS377 3.9 67.5 1.0
CG C:HIS384 4.1 64.9 1.0
NZ F:LYS188 4.2 63.0 1.0
O4 C:FAD501 4.4 61.2 1.0
CG C:ASN382 4.5 66.1 1.0
CB C:GLU422 4.7 65.9 1.0
CA C:GLY154 4.8 66.7 1.0
O C:GLY153 4.8 63.5 1.0
CB C:ASN382 4.8 66.1 1.0
O C:GLY154 5.0 66.7 1.0
C C:GLY154 5.0 66.7 1.0

Iron binding site 2 out of 2 in 7qh2

Go back to Iron Binding Sites List in 7qh2
Iron binding site 2 out of 2 in the Cryo-Em Structure of Ldh-Etfab Complex From Acetobacterium Woodii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Ldh-Etfab Complex From Acetobacterium Woodii within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:90.4
occ:1.00
OE2 F:GLU422 1.7 66.0 1.0
O F:HOH601 1.9 69.0 1.0
NE2 F:HIS384 1.9 65.8 1.0
NE2 F:HIS377 2.0 66.7 1.0
OE1 F:GLU422 2.2 66.0 1.0
CD F:GLU422 2.2 66.0 1.0
CE1 F:HIS384 2.7 65.8 1.0
CD2 F:HIS377 2.8 66.7 1.0
CD2 F:HIS384 3.0 65.8 1.0
CE1 F:HIS377 3.0 66.7 1.0
OD1 F:ASN382 3.5 65.8 1.0
CG F:GLU422 3.7 66.0 1.0
ND1 F:HIS384 3.9 65.8 1.0
CG F:HIS377 4.0 66.7 1.0
CG F:HIS384 4.1 65.8 1.0
ND1 F:HIS377 4.1 66.7 1.0
NZ C:LYS188 4.3 62.9 1.0
O4 F:FAD501 4.5 61.2 1.0
CG F:ASN382 4.5 65.8 1.0
CB F:GLU422 4.7 66.0 1.0
CA F:GLY154 4.8 67.0 1.0
CB F:ASN382 4.8 65.8 1.0
O F:GLY153 4.9 63.0 1.0
O F:GLY154 5.0 67.0 1.0

Reference:

K.Kayastha, A.Katsyv, C.Himmrich, S.Welsch, J.M.Schuller, U.Ermler, V.Muller. Structure-Based Electron-Confurcation Mechanism of the Ldh-Etfab Complex. Elife V. 11 2022.
ISSN: ESSN 2050-084X
PubMed: 35748623
DOI: 10.7554/ELIFE.77095
Page generated: Wed Apr 5 04:16:17 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy