Iron in PDB 7qhm: Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Enzymatic activity of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
All present enzymatic activity of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound):
7.1.1.8;
7.1.1.9;
Other elements in 7qhm:
The structure of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
(pdb code 7qhm). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound), PDB code: 7qhm:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 7qhm
Go back to
Iron Binding Sites List in 7qhm
Iron binding site 1 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:32.1
occ:1.00
|
FE1
|
A:FES501
|
0.0
|
32.1
|
1.0
|
SG
|
A:CYS352
|
2.2
|
31.0
|
1.0
|
S1
|
A:FES501
|
2.2
|
32.1
|
1.0
|
S2
|
A:FES501
|
2.2
|
32.1
|
1.0
|
SG
|
A:CYS333
|
2.3
|
26.6
|
1.0
|
FE2
|
A:FES501
|
2.7
|
32.1
|
1.0
|
HB2
|
A:CYS333
|
3.1
|
26.6
|
1.0
|
HB3
|
A:CYS333
|
3.1
|
26.6
|
1.0
|
CB
|
A:CYS333
|
3.1
|
26.6
|
1.0
|
HB3
|
A:CYS352
|
3.1
|
31.0
|
1.0
|
HB3
|
A:HIS335
|
3.2
|
28.0
|
1.0
|
CB
|
A:CYS352
|
3.2
|
31.0
|
1.0
|
HB2
|
A:CYS352
|
3.3
|
31.0
|
1.0
|
HB2
|
A:CYS338
|
3.4
|
28.9
|
1.0
|
HB2
|
A:CYS354
|
3.5
|
33.0
|
1.0
|
H
|
A:HIS355
|
3.8
|
32.4
|
1.0
|
H
|
A:CYS338
|
3.9
|
28.9
|
1.0
|
HB2
|
A:SER357
|
3.9
|
31.1
|
1.0
|
CB
|
A:HIS335
|
4.0
|
28.0
|
1.0
|
H
|
A:ILE336
|
4.1
|
28.0
|
1.0
|
HB2
|
A:HIS335
|
4.2
|
28.0
|
1.0
|
H
|
A:HIS335
|
4.2
|
28.0
|
1.0
|
HG
|
A:SER357
|
4.3
|
31.1
|
1.0
|
CB
|
A:CYS338
|
4.3
|
28.9
|
1.0
|
H
|
A:CYS354
|
4.4
|
33.0
|
1.0
|
ND1
|
A:HIS335
|
4.4
|
28.0
|
1.0
|
CB
|
A:CYS354
|
4.4
|
33.0
|
1.0
|
H
|
A:SER357
|
4.5
|
31.1
|
1.0
|
ND1
|
A:HIS355
|
4.5
|
32.4
|
1.0
|
HG22
|
A:THR340
|
4.5
|
29.4
|
1.0
|
H
|
A:GLY337
|
4.6
|
26.8
|
1.0
|
CA
|
A:CYS352
|
4.6
|
31.0
|
1.0
|
CA
|
A:CYS333
|
4.6
|
26.6
|
1.0
|
N
|
A:HIS355
|
4.6
|
32.4
|
1.0
|
N
|
A:CYS338
|
4.6
|
28.9
|
1.0
|
HB2
|
A:HIS355
|
4.7
|
32.4
|
1.0
|
HB3
|
A:CYS354
|
4.7
|
33.0
|
1.0
|
CG
|
A:HIS335
|
4.7
|
28.0
|
1.0
|
HE2
|
A:PHE359
|
4.8
|
31.2
|
1.0
|
CB
|
A:SER357
|
4.8
|
31.1
|
1.0
|
HB3
|
A:CYS338
|
4.8
|
28.9
|
1.0
|
HZ
|
A:PHE359
|
4.8
|
31.2
|
1.0
|
OG
|
A:SER357
|
4.8
|
31.1
|
1.0
|
HA
|
A:CYS333
|
4.9
|
26.6
|
1.0
|
N
|
A:ILE336
|
4.9
|
28.0
|
1.0
|
HA
|
A:CYS352
|
4.9
|
31.0
|
1.0
|
N
|
A:HIS335
|
5.0
|
28.0
|
1.0
|
|
Iron binding site 2 out
of 16 in 7qhm
Go back to
Iron Binding Sites List in 7qhm
Iron binding site 2 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:32.1
occ:1.00
|
FE2
|
A:FES501
|
0.0
|
32.1
|
1.0
|
ND1
|
A:HIS355
|
2.1
|
32.4
|
1.0
|
ND1
|
A:HIS335
|
2.1
|
28.0
|
1.0
|
S1
|
A:FES501
|
2.2
|
32.1
|
1.0
|
S2
|
A:FES501
|
2.3
|
32.1
|
1.0
|
FE1
|
A:FES501
|
2.7
|
32.1
|
1.0
|
HB3
|
A:HIS335
|
2.8
|
28.0
|
1.0
|
HB2
|
A:HIS355
|
2.8
|
32.4
|
1.0
|
CE1
|
A:HIS355
|
3.1
|
32.4
|
1.0
|
CG
|
A:HIS355
|
3.1
|
32.4
|
1.0
|
CG
|
A:HIS335
|
3.1
|
28.0
|
1.0
|
CE1
|
A:HIS335
|
3.1
|
28.0
|
1.0
|
HG12
|
A:ILE336
|
3.3
|
28.0
|
1.0
|
HE1
|
A:HIS355
|
3.3
|
32.4
|
1.0
|
H
|
A:HIS355
|
3.3
|
32.4
|
1.0
|
HE1
|
A:HIS335
|
3.3
|
28.0
|
1.0
|
CB
|
A:HIS335
|
3.4
|
28.0
|
1.0
|
CB
|
A:HIS355
|
3.4
|
32.4
|
1.0
|
H
|
A:ILE336
|
3.5
|
28.0
|
1.0
|
HB2
|
A:CYS354
|
3.7
|
33.0
|
1.0
|
HB2
|
A:HIS335
|
3.8
|
28.0
|
1.0
|
N
|
A:HIS355
|
3.9
|
32.4
|
1.0
|
HG2
|
A:PRO371
|
3.9
|
30.9
|
1.0
|
HB3
|
A:CYS354
|
4.0
|
33.0
|
1.0
|
HG
|
A:SER357
|
4.1
|
31.1
|
1.0
|
CG1
|
A:ILE336
|
4.1
|
28.0
|
1.0
|
CA
|
A:HIS355
|
4.2
|
32.4
|
1.0
|
HB3
|
A:HIS355
|
4.2
|
32.4
|
1.0
|
HG13
|
A:ILE336
|
4.2
|
28.0
|
1.0
|
N
|
A:ILE336
|
4.2
|
28.0
|
1.0
|
NE2
|
A:HIS355
|
4.2
|
32.4
|
1.0
|
CD2
|
A:HIS355
|
4.2
|
32.4
|
1.0
|
NE2
|
A:HIS335
|
4.2
|
28.0
|
1.0
|
CD2
|
A:HIS335
|
4.3
|
28.0
|
1.0
|
CB
|
A:CYS354
|
4.3
|
33.0
|
1.0
|
SG
|
A:CYS333
|
4.3
|
26.6
|
1.0
|
SG
|
A:CYS352
|
4.4
|
31.0
|
1.0
|
HG3
|
A:PRO371
|
4.6
|
30.9
|
1.0
|
CG
|
A:PRO371
|
4.7
|
30.9
|
1.0
|
CA
|
A:HIS335
|
4.7
|
28.0
|
1.0
|
HD13
|
A:ILE336
|
4.7
|
28.0
|
1.0
|
C
|
A:CYS354
|
4.8
|
33.0
|
1.0
|
HB2
|
A:CYS338
|
4.8
|
28.9
|
1.0
|
C
|
A:HIS355
|
4.8
|
32.4
|
1.0
|
C
|
A:HIS335
|
4.8
|
28.0
|
1.0
|
CD1
|
A:ILE336
|
4.9
|
28.0
|
1.0
|
OG
|
A:SER357
|
4.9
|
31.1
|
1.0
|
HD11
|
A:ILE336
|
4.9
|
28.0
|
1.0
|
H
|
A:HIS335
|
4.9
|
28.0
|
1.0
|
HD2
|
A:PRO371
|
4.9
|
30.9
|
1.0
|
H
|
A:CYS338
|
5.0
|
28.9
|
1.0
|
HE2
|
A:HIS355
|
5.0
|
32.4
|
1.0
|
|
Iron binding site 3 out
of 16 in 7qhm
Go back to
Iron Binding Sites List in 7qhm
Iron binding site 3 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe602
b:19.2
occ:1.00
|
FE
|
B:HEM602
|
0.0
|
19.2
|
1.0
|
ND
|
B:HEM602
|
2.0
|
19.2
|
1.0
|
NB
|
B:HEM602
|
2.0
|
19.2
|
1.0
|
NC
|
B:HEM602
|
2.0
|
19.2
|
1.0
|
NA
|
B:HEM602
|
2.1
|
19.2
|
1.0
|
NE2
|
B:HIS204
|
2.2
|
14.8
|
1.0
|
NE2
|
B:HIS103
|
2.3
|
16.4
|
1.0
|
CE1
|
B:HIS204
|
2.9
|
14.8
|
1.0
|
HE1
|
B:HIS204
|
3.0
|
14.8
|
1.0
|
C4D
|
B:HEM602
|
3.0
|
19.2
|
1.0
|
C1D
|
B:HEM602
|
3.0
|
19.2
|
1.0
|
C4A
|
B:HEM602
|
3.0
|
19.2
|
1.0
|
C1B
|
B:HEM602
|
3.0
|
19.2
|
1.0
|
C4C
|
B:HEM602
|
3.0
|
19.2
|
1.0
|
C4B
|
B:HEM602
|
3.1
|
19.2
|
1.0
|
C1C
|
B:HEM602
|
3.1
|
19.2
|
1.0
|
C1A
|
B:HEM602
|
3.1
|
19.2
|
1.0
|
CD2
|
B:HIS204
|
3.3
|
14.8
|
1.0
|
CD2
|
B:HIS103
|
3.3
|
16.4
|
1.0
|
CE1
|
B:HIS103
|
3.3
|
16.4
|
1.0
|
CHB
|
B:HEM602
|
3.4
|
19.2
|
1.0
|
CHD
|
B:HEM602
|
3.4
|
19.2
|
1.0
|
CHA
|
B:HEM602
|
3.4
|
19.2
|
1.0
|
HD2
|
B:HIS103
|
3.4
|
16.4
|
1.0
|
CHC
|
B:HEM602
|
3.5
|
19.2
|
1.0
|
HE1
|
B:HIS103
|
3.5
|
16.4
|
1.0
|
HD2
|
B:HIS204
|
3.6
|
14.8
|
1.0
|
ND1
|
B:HIS204
|
4.1
|
14.8
|
1.0
|
HA3
|
B:GLY152
|
4.2
|
18.4
|
1.0
|
C3D
|
B:HEM602
|
4.2
|
19.2
|
1.0
|
C2D
|
B:HEM602
|
4.2
|
19.2
|
1.0
|
C3A
|
B:HEM602
|
4.2
|
19.2
|
1.0
|
C2B
|
B:HEM602
|
4.3
|
19.2
|
1.0
|
C3B
|
B:HEM602
|
4.3
|
19.2
|
1.0
|
C3C
|
B:HEM602
|
4.3
|
19.2
|
1.0
|
C2A
|
B:HEM602
|
4.3
|
19.2
|
1.0
|
C2C
|
B:HEM602
|
4.3
|
19.2
|
1.0
|
CG
|
B:HIS204
|
4.3
|
14.8
|
1.0
|
HHB
|
B:HEM602
|
4.4
|
19.2
|
1.0
|
HHA
|
B:HEM602
|
4.4
|
19.2
|
1.0
|
HHD
|
B:HEM602
|
4.4
|
19.2
|
1.0
|
HHC
|
B:HEM602
|
4.4
|
19.2
|
1.0
|
ND1
|
B:HIS103
|
4.4
|
16.4
|
1.0
|
CG
|
B:HIS103
|
4.5
|
16.4
|
1.0
|
HD22
|
B:LEU47
|
4.5
|
16.1
|
1.0
|
HA2
|
B:GLY152
|
4.6
|
18.4
|
1.0
|
HA2
|
B:GLY51
|
4.7
|
15.8
|
1.0
|
HD1
|
B:HIS204
|
4.8
|
14.8
|
1.0
|
CA
|
B:GLY152
|
4.8
|
18.4
|
1.0
|
HA3
|
B:GLY51
|
4.8
|
15.8
|
1.0
|
HD12
|
B:LEU54
|
4.9
|
17.4
|
1.0
|
|
Iron binding site 4 out
of 16 in 7qhm
Go back to
Iron Binding Sites List in 7qhm
Iron binding site 4 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe603
b:18.9
occ:1.00
|
FE
|
B:HEM603
|
0.0
|
18.9
|
1.0
|
NB
|
B:HEM603
|
2.0
|
18.9
|
1.0
|
NA
|
B:HEM603
|
2.0
|
18.9
|
1.0
|
NC
|
B:HEM603
|
2.0
|
18.9
|
1.0
|
ND
|
B:HEM603
|
2.1
|
18.9
|
1.0
|
NE2
|
B:HIS219
|
2.2
|
17.6
|
1.0
|
NE2
|
B:HIS117
|
2.2
|
18.2
|
1.0
|
C4B
|
B:HEM603
|
3.0
|
18.9
|
1.0
|
C1C
|
B:HEM603
|
3.0
|
18.9
|
1.0
|
C1B
|
B:HEM603
|
3.0
|
18.9
|
1.0
|
C4A
|
B:HEM603
|
3.0
|
18.9
|
1.0
|
C1A
|
B:HEM603
|
3.0
|
18.9
|
1.0
|
C4C
|
B:HEM603
|
3.0
|
18.9
|
1.0
|
C4D
|
B:HEM603
|
3.1
|
18.9
|
1.0
|
CE1
|
B:HIS219
|
3.1
|
17.6
|
1.0
|
C1D
|
B:HEM603
|
3.1
|
18.9
|
1.0
|
CD2
|
B:HIS117
|
3.1
|
18.2
|
1.0
|
HE1
|
B:HIS219
|
3.2
|
17.6
|
1.0
|
CE1
|
B:HIS117
|
3.2
|
18.2
|
1.0
|
CD2
|
B:HIS219
|
3.2
|
17.6
|
1.0
|
HD2
|
B:HIS117
|
3.2
|
18.2
|
1.0
|
CHC
|
B:HEM603
|
3.3
|
18.9
|
1.0
|
CHB
|
B:HEM603
|
3.4
|
18.9
|
1.0
|
CHA
|
B:HEM603
|
3.4
|
18.9
|
1.0
|
HE1
|
B:HIS117
|
3.4
|
18.2
|
1.0
|
HD2
|
B:HIS219
|
3.4
|
17.6
|
1.0
|
CHD
|
B:HEM603
|
3.4
|
18.9
|
1.0
|
C2C
|
B:HEM603
|
4.2
|
18.9
|
1.0
|
C3B
|
B:HEM603
|
4.2
|
18.9
|
1.0
|
C3C
|
B:HEM603
|
4.2
|
18.9
|
1.0
|
ND1
|
B:HIS219
|
4.2
|
17.6
|
1.0
|
C2B
|
B:HEM603
|
4.2
|
18.9
|
1.0
|
C3A
|
B:HEM603
|
4.2
|
18.9
|
1.0
|
C2A
|
B:HEM603
|
4.2
|
18.9
|
1.0
|
C3D
|
B:HEM603
|
4.3
|
18.9
|
1.0
|
CG
|
B:HIS117
|
4.3
|
18.2
|
1.0
|
ND1
|
B:HIS117
|
4.3
|
18.2
|
1.0
|
C2D
|
B:HEM603
|
4.3
|
18.9
|
1.0
|
CG
|
B:HIS219
|
4.3
|
17.6
|
1.0
|
HHC
|
B:HEM603
|
4.3
|
18.9
|
1.0
|
HHB
|
B:HEM603
|
4.4
|
18.9
|
1.0
|
HHA
|
B:HEM603
|
4.4
|
18.9
|
1.0
|
HHD
|
B:HEM603
|
4.4
|
18.9
|
1.0
|
HG13
|
B:ILE121
|
4.6
|
18.9
|
1.0
|
HG21
|
B:VAL223
|
4.6
|
18.5
|
1.0
|
HD11
|
B:ILE121
|
4.7
|
18.9
|
1.0
|
HA3
|
B:GLY37
|
4.7
|
17.8
|
1.0
|
HD1
|
B:HIS219
|
5.0
|
17.6
|
1.0
|
|
Iron binding site 5 out
of 16 in 7qhm
Go back to
Iron Binding Sites List in 7qhm
Iron binding site 5 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe301
b:34.5
occ:1.00
|
FE
|
C:HEC301
|
0.0
|
34.5
|
1.0
|
NC
|
C:HEC301
|
2.0
|
34.5
|
1.0
|
NB
|
C:HEC301
|
2.0
|
34.5
|
1.0
|
NA
|
C:HEC301
|
2.1
|
34.5
|
1.0
|
ND
|
C:HEC301
|
2.1
|
34.5
|
1.0
|
NE2
|
C:HIS71
|
2.2
|
35.8
|
1.0
|
SD
|
C:MET102
|
2.4
|
34.3
|
1.0
|
CE1
|
C:HIS71
|
3.0
|
35.8
|
1.0
|
HE1
|
C:HIS71
|
3.0
|
35.8
|
1.0
|
C4C
|
C:HEC301
|
3.0
|
34.5
|
1.0
|
C1B
|
C:HEC301
|
3.0
|
34.5
|
1.0
|
C1C
|
C:HEC301
|
3.0
|
34.5
|
1.0
|
C4A
|
C:HEC301
|
3.0
|
34.5
|
1.0
|
C4B
|
C:HEC301
|
3.1
|
34.5
|
1.0
|
C1A
|
C:HEC301
|
3.1
|
34.5
|
1.0
|
C1D
|
C:HEC301
|
3.1
|
34.5
|
1.0
|
C4D
|
C:HEC301
|
3.1
|
34.5
|
1.0
|
CD2
|
C:HIS71
|
3.3
|
35.8
|
1.0
|
CHB
|
C:HEC301
|
3.4
|
34.5
|
1.0
|
CHC
|
C:HEC301
|
3.4
|
34.5
|
1.0
|
CHD
|
C:HEC301
|
3.4
|
34.5
|
1.0
|
HG3
|
C:MET102
|
3.5
|
34.3
|
1.0
|
CE
|
C:MET102
|
3.5
|
34.3
|
1.0
|
CHA
|
C:HEC301
|
3.5
|
34.5
|
1.0
|
HE1
|
C:MET102
|
3.5
|
34.3
|
1.0
|
HE3
|
C:MET102
|
3.6
|
34.3
|
1.0
|
HD2
|
C:HIS71
|
3.6
|
35.8
|
1.0
|
CG
|
C:MET102
|
3.6
|
34.3
|
1.0
|
HB3
|
C:MET102
|
4.0
|
34.3
|
1.0
|
ND1
|
C:HIS71
|
4.2
|
35.8
|
1.0
|
C3C
|
C:HEC301
|
4.2
|
34.5
|
1.0
|
C2C
|
C:HEC301
|
4.2
|
34.5
|
1.0
|
C2B
|
C:HEC301
|
4.2
|
34.5
|
1.0
|
C3A
|
C:HEC301
|
4.3
|
34.5
|
1.0
|
C3B
|
C:HEC301
|
4.3
|
34.5
|
1.0
|
C2A
|
C:HEC301
|
4.3
|
34.5
|
1.0
|
C2D
|
C:HEC301
|
4.3
|
34.5
|
1.0
|
C3D
|
C:HEC301
|
4.3
|
34.5
|
1.0
|
HG2
|
C:MET102
|
4.3
|
34.3
|
1.0
|
HE2
|
C:MET102
|
4.3
|
34.3
|
1.0
|
CG
|
C:HIS71
|
4.4
|
35.8
|
1.0
|
HHB
|
C:HEC301
|
4.4
|
34.5
|
1.0
|
HHC
|
C:HEC301
|
4.4
|
34.5
|
1.0
|
CB
|
C:MET102
|
4.4
|
34.3
|
1.0
|
HHD
|
C:HEC301
|
4.4
|
34.5
|
1.0
|
HHA
|
C:HEC301
|
4.5
|
34.5
|
1.0
|
HD21
|
C:LEU85
|
4.5
|
36.9
|
1.0
|
HD11
|
C:LEU85
|
4.5
|
36.9
|
1.0
|
HD2
|
C:PRO83
|
4.5
|
36.7
|
1.0
|
H
|
C:ILE104
|
4.7
|
34.0
|
1.0
|
HA
|
C:PRO103
|
4.7
|
34.6
|
1.0
|
HG13
|
C:ILE104
|
4.7
|
34.0
|
1.0
|
HD12
|
C:ILE104
|
4.8
|
34.0
|
1.0
|
HD1
|
C:HIS71
|
4.9
|
35.8
|
1.0
|
HA
|
C:MET102
|
5.0
|
34.3
|
1.0
|
HB2
|
C:CYS70
|
5.0
|
37.5
|
1.0
|
|
Iron binding site 6 out
of 16 in 7qhm
Go back to
Iron Binding Sites List in 7qhm
Iron binding site 6 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe302
b:35.9
occ:1.00
|
FE
|
C:HEC302
|
0.0
|
35.9
|
1.0
|
NA
|
C:HEC302
|
2.0
|
35.9
|
1.0
|
NB
|
C:HEC302
|
2.0
|
35.9
|
1.0
|
ND
|
C:HEC302
|
2.0
|
35.9
|
1.0
|
NC
|
C:HEC302
|
2.1
|
35.9
|
1.0
|
SD
|
C:MET218
|
2.5
|
33.5
|
1.0
|
NE2
|
C:HIS181
|
2.5
|
34.4
|
1.0
|
C4A
|
C:HEC302
|
3.0
|
35.9
|
1.0
|
C1A
|
C:HEC302
|
3.0
|
35.9
|
1.0
|
C1B
|
C:HEC302
|
3.0
|
35.9
|
1.0
|
C4D
|
C:HEC302
|
3.0
|
35.9
|
1.0
|
C4B
|
C:HEC302
|
3.0
|
35.9
|
1.0
|
C1C
|
C:HEC302
|
3.1
|
35.9
|
1.0
|
C1D
|
C:HEC302
|
3.1
|
35.9
|
1.0
|
C4C
|
C:HEC302
|
3.1
|
35.9
|
1.0
|
CE1
|
C:HIS181
|
3.3
|
34.4
|
1.0
|
HE1
|
C:HIS181
|
3.4
|
34.4
|
1.0
|
HG3
|
C:MET218
|
3.4
|
33.5
|
1.0
|
CHB
|
C:HEC302
|
3.4
|
35.9
|
1.0
|
CHA
|
C:HEC302
|
3.4
|
35.9
|
1.0
|
CHC
|
C:HEC302
|
3.4
|
35.9
|
1.0
|
CHD
|
C:HEC302
|
3.5
|
35.9
|
1.0
|
CG
|
C:MET218
|
3.5
|
33.5
|
1.0
|
CD2
|
C:HIS181
|
3.6
|
34.4
|
1.0
|
CE
|
C:MET218
|
3.6
|
33.5
|
1.0
|
HE3
|
C:MET218
|
3.7
|
33.5
|
1.0
|
HE1
|
C:MET218
|
3.7
|
33.5
|
1.0
|
HD2
|
C:HIS181
|
3.8
|
34.4
|
1.0
|
HB2
|
C:MET218
|
3.8
|
33.5
|
1.0
|
C2A
|
C:HEC302
|
4.2
|
35.9
|
1.0
|
C3A
|
C:HEC302
|
4.2
|
35.9
|
1.0
|
CB
|
C:MET218
|
4.2
|
33.5
|
1.0
|
C2B
|
C:HEC302
|
4.2
|
35.9
|
1.0
|
C3B
|
C:HEC302
|
4.3
|
35.9
|
1.0
|
C3D
|
C:HEC302
|
4.3
|
35.9
|
1.0
|
C2D
|
C:HEC302
|
4.3
|
35.9
|
1.0
|
C2C
|
C:HEC302
|
4.3
|
35.9
|
1.0
|
C3C
|
C:HEC302
|
4.3
|
35.9
|
1.0
|
HG2
|
C:MET218
|
4.3
|
33.5
|
1.0
|
HHA
|
C:HEC302
|
4.4
|
35.9
|
1.0
|
HHB
|
C:HEC302
|
4.4
|
35.9
|
1.0
|
HHC
|
C:HEC302
|
4.4
|
35.9
|
1.0
|
HE2
|
C:MET218
|
4.4
|
33.5
|
1.0
|
HHD
|
C:HEC302
|
4.4
|
35.9
|
1.0
|
HD21
|
C:LEU199
|
4.4
|
38.6
|
1.0
|
HD2
|
C:PRO197
|
4.5
|
36.4
|
1.0
|
ND1
|
C:HIS181
|
4.5
|
34.4
|
1.0
|
HB1
|
C:ALA196
|
4.6
|
35.3
|
1.0
|
CG
|
C:HIS181
|
4.7
|
34.4
|
1.0
|
HA
|
C:MET218
|
4.8
|
33.5
|
1.0
|
HB3
|
C:MET218
|
4.9
|
33.5
|
1.0
|
HB1
|
C:ALA210
|
5.0
|
37.0
|
1.0
|
|
Iron binding site 7 out
of 16 in 7qhm
Go back to
Iron Binding Sites List in 7qhm
Iron binding site 7 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe601
b:30.4
occ:1.00
|
FE
|
D:HAS601
|
0.0
|
30.4
|
1.0
|
NE2
|
D:HIS400
|
2.0
|
29.3
|
1.0
|
ND
|
D:HAS601
|
2.0
|
30.4
|
1.0
|
NC
|
D:HAS601
|
2.0
|
30.4
|
1.0
|
NA
|
D:HAS601
|
2.0
|
30.4
|
1.0
|
NB
|
D:HAS601
|
2.0
|
30.4
|
1.0
|
NE2
|
D:HIS87
|
2.1
|
26.9
|
1.0
|
CE1
|
D:HIS400
|
2.6
|
29.3
|
1.0
|
HE1
|
D:HIS400
|
2.6
|
29.3
|
1.0
|
CE1
|
D:HIS87
|
3.0
|
26.9
|
1.0
|
C1B
|
D:HAS601
|
3.0
|
30.4
|
1.0
|
C1D
|
D:HAS601
|
3.0
|
30.4
|
1.0
|
C4C
|
D:HAS601
|
3.0
|
30.4
|
1.0
|
C4D
|
D:HAS601
|
3.0
|
30.4
|
1.0
|
C4A
|
D:HAS601
|
3.0
|
30.4
|
1.0
|
C1C
|
D:HAS601
|
3.0
|
30.4
|
1.0
|
C1A
|
D:HAS601
|
3.1
|
30.4
|
1.0
|
HE1
|
D:HIS87
|
3.1
|
26.9
|
1.0
|
C4B
|
D:HAS601
|
3.1
|
30.4
|
1.0
|
CD2
|
D:HIS400
|
3.2
|
29.3
|
1.0
|
CD2
|
D:HIS87
|
3.2
|
26.9
|
1.0
|
CHB
|
D:HAS601
|
3.4
|
30.4
|
1.0
|
CHD
|
D:HAS601
|
3.4
|
30.4
|
1.0
|
CHA
|
D:HAS601
|
3.4
|
30.4
|
1.0
|
CHC
|
D:HAS601
|
3.4
|
30.4
|
1.0
|
HD2
|
D:HIS87
|
3.5
|
26.9
|
1.0
|
HD2
|
D:HIS400
|
3.6
|
29.3
|
1.0
|
ND1
|
D:HIS400
|
3.8
|
29.3
|
1.0
|
HE1
|
D:PHE399
|
4.1
|
30.4
|
1.0
|
CG
|
D:HIS400
|
4.1
|
29.3
|
1.0
|
ND1
|
D:HIS87
|
4.2
|
26.9
|
1.0
|
C3D
|
D:HAS601
|
4.2
|
30.4
|
1.0
|
C2D
|
D:HAS601
|
4.2
|
30.4
|
1.0
|
C2B
|
D:HAS601
|
4.2
|
30.4
|
1.0
|
C3C
|
D:HAS601
|
4.3
|
30.4
|
1.0
|
C2C
|
D:HAS601
|
4.3
|
30.4
|
1.0
|
C3A
|
D:HAS601
|
4.3
|
30.4
|
1.0
|
C2A
|
D:HAS601
|
4.3
|
30.4
|
1.0
|
C3B
|
D:HAS601
|
4.3
|
30.4
|
1.0
|
CG
|
D:HIS87
|
4.3
|
26.9
|
1.0
|
HHB
|
D:HAS601
|
4.3
|
30.4
|
1.0
|
HHD
|
D:HAS601
|
4.4
|
30.4
|
1.0
|
HZ
|
D:PHE447
|
4.4
|
31.5
|
1.0
|
HHA
|
D:HAS601
|
4.4
|
30.4
|
1.0
|
HHC
|
D:HAS601
|
4.4
|
30.4
|
1.0
|
HG3
|
D:MET91
|
4.5
|
28.4
|
1.0
|
HD1
|
D:HIS400
|
4.5
|
29.3
|
1.0
|
HB2
|
D:ALA60
|
4.6
|
28.6
|
1.0
|
HB1
|
D:ALA60
|
4.8
|
28.6
|
1.0
|
HE1
|
D:PHE447
|
4.8
|
31.5
|
1.0
|
HD1
|
D:HIS87
|
4.9
|
26.9
|
1.0
|
|
Iron binding site 8 out
of 16 in 7qhm
Go back to
Iron Binding Sites List in 7qhm
Iron binding site 8 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe602
b:36.5
occ:1.00
|
FE
|
D:HAS602
|
0.0
|
36.5
|
1.0
|
N3
|
D:AZI606
|
1.9
|
42.5
|
1.0
|
NB
|
D:HAS602
|
2.0
|
36.5
|
1.0
|
NC
|
D:HAS602
|
2.0
|
36.5
|
1.0
|
NA
|
D:HAS602
|
2.0
|
36.5
|
1.0
|
ND
|
D:HAS602
|
2.0
|
36.5
|
1.0
|
NE2
|
D:HIS398
|
2.4
|
31.9
|
1.0
|
N2
|
D:AZI606
|
2.5
|
42.5
|
1.0
|
C1C
|
D:HAS602
|
3.0
|
36.5
|
1.0
|
C4D
|
D:HAS602
|
3.0
|
36.5
|
1.0
|
C1B
|
D:HAS602
|
3.0
|
36.5
|
1.0
|
C1A
|
D:HAS602
|
3.0
|
36.5
|
1.0
|
C4B
|
D:HAS602
|
3.1
|
36.5
|
1.0
|
C1D
|
D:HAS602
|
3.1
|
36.5
|
1.0
|
C4A
|
D:HAS602
|
3.1
|
36.5
|
1.0
|
C4C
|
D:HAS602
|
3.1
|
36.5
|
1.0
|
CD2
|
D:HIS398
|
3.3
|
31.9
|
1.0
|
HD2
|
D:HIS398
|
3.3
|
31.9
|
1.0
|
CHA
|
D:HAS602
|
3.4
|
36.5
|
1.0
|
CHC
|
D:HAS602
|
3.4
|
36.5
|
1.0
|
CHB
|
D:HAS602
|
3.4
|
36.5
|
1.0
|
CHD
|
D:HAS602
|
3.4
|
36.5
|
1.0
|
N1
|
D:AZI606
|
3.4
|
42.5
|
1.0
|
CE1
|
D:HIS398
|
3.5
|
31.9
|
1.0
|
HE1
|
D:HIS398
|
3.8
|
31.9
|
1.0
|
C3D
|
D:HAS602
|
4.2
|
36.5
|
1.0
|
C2B
|
D:HAS602
|
4.2
|
36.5
|
1.0
|
C2C
|
D:HAS602
|
4.2
|
36.5
|
1.0
|
C2A
|
D:HAS602
|
4.3
|
36.5
|
1.0
|
C3A
|
D:HAS602
|
4.3
|
36.5
|
1.0
|
C2D
|
D:HAS602
|
4.3
|
36.5
|
1.0
|
C3B
|
D:HAS602
|
4.3
|
36.5
|
1.0
|
C3C
|
D:HAS602
|
4.3
|
36.5
|
1.0
|
HHC
|
D:HAS602
|
4.4
|
36.5
|
1.0
|
HHA
|
D:HAS602
|
4.4
|
36.5
|
1.0
|
HE1
|
D:HIS315
|
4.4
|
33.6
|
1.0
|
HHB
|
D:HAS602
|
4.4
|
36.5
|
1.0
|
HHD
|
D:HAS602
|
4.4
|
36.5
|
1.0
|
CG
|
D:HIS398
|
4.5
|
31.9
|
1.0
|
HG21
|
D:VAL268
|
4.5
|
31.1
|
1.0
|
HB3
|
D:PHE399
|
4.6
|
30.4
|
1.0
|
ND1
|
D:HIS398
|
4.6
|
31.9
|
1.0
|
CU
|
D:CU603
|
4.6
|
67.4
|
1.0
|
HG21
|
D:THR402
|
4.6
|
33.1
|
1.0
|
HD12
|
D:LEU380
|
4.8
|
34.0
|
1.0
|
HA
|
D:PHE399
|
4.8
|
30.4
|
1.0
|
HE1
|
D:HIS265
|
4.9
|
32.1
|
1.0
|
|
Iron binding site 9 out
of 16 in 7qhm
Go back to
Iron Binding Sites List in 7qhm
Iron binding site 9 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe503
b:20.5
occ:1.00
|
FE1
|
N:FES503
|
0.0
|
20.5
|
1.0
|
SG
|
N:CYS352
|
2.2
|
15.5
|
1.0
|
S1
|
N:FES503
|
2.2
|
20.5
|
1.0
|
S2
|
N:FES503
|
2.2
|
20.5
|
1.0
|
SG
|
N:CYS333
|
2.4
|
15.5
|
1.0
|
FE2
|
N:FES503
|
2.7
|
20.5
|
1.0
|
HB3
|
N:CYS333
|
3.1
|
15.5
|
1.0
|
HB3
|
N:HIS335
|
3.1
|
14.2
|
1.0
|
HB2
|
N:CYS333
|
3.1
|
15.5
|
1.0
|
CB
|
N:CYS333
|
3.1
|
15.5
|
1.0
|
CB
|
N:CYS352
|
3.2
|
15.5
|
1.0
|
HB3
|
N:CYS352
|
3.2
|
15.5
|
1.0
|
HB2
|
N:CYS352
|
3.3
|
15.5
|
1.0
|
HB2
|
N:CYS338
|
3.4
|
17.0
|
1.0
|
HB2
|
N:CYS354
|
3.6
|
15.7
|
1.0
|
HB2
|
N:SER357
|
3.8
|
14.4
|
1.0
|
H
|
N:HIS355
|
3.9
|
16.0
|
1.0
|
H
|
N:CYS338
|
3.9
|
17.0
|
1.0
|
CB
|
N:HIS335
|
4.0
|
14.2
|
1.0
|
HG
|
N:SER357
|
4.0
|
14.4
|
1.0
|
H
|
N:ILE336
|
4.0
|
18.0
|
1.0
|
HB2
|
N:HIS335
|
4.1
|
14.2
|
1.0
|
H
|
N:HIS335
|
4.2
|
14.2
|
1.0
|
HG22
|
N:THR340
|
4.3
|
14.8
|
1.0
|
CB
|
N:CYS338
|
4.3
|
17.0
|
1.0
|
ND1
|
N:HIS335
|
4.4
|
14.2
|
1.0
|
H
|
N:SER357
|
4.5
|
14.4
|
1.0
|
H
|
N:CYS354
|
4.5
|
15.7
|
1.0
|
CB
|
N:CYS354
|
4.6
|
15.7
|
1.0
|
OG
|
N:SER357
|
4.6
|
14.4
|
1.0
|
ND1
|
N:HIS355
|
4.6
|
16.0
|
1.0
|
CA
|
N:CYS333
|
4.6
|
15.5
|
1.0
|
CA
|
N:CYS352
|
4.6
|
15.5
|
1.0
|
CB
|
N:SER357
|
4.6
|
14.4
|
1.0
|
CG
|
N:HIS335
|
4.7
|
14.2
|
1.0
|
N
|
N:CYS338
|
4.7
|
17.0
|
1.0
|
H
|
N:GLY337
|
4.7
|
14.5
|
1.0
|
N
|
N:HIS355
|
4.7
|
16.0
|
1.0
|
HB2
|
N:HIS355
|
4.7
|
16.0
|
1.0
|
HB3
|
N:CYS338
|
4.8
|
17.0
|
1.0
|
O
|
N:CYS338
|
4.8
|
17.0
|
1.0
|
HB3
|
N:CYS354
|
4.9
|
15.7
|
1.0
|
N
|
N:ILE336
|
4.9
|
18.0
|
1.0
|
HA
|
N:CYS352
|
4.9
|
15.5
|
1.0
|
N
|
N:HIS335
|
4.9
|
14.2
|
1.0
|
HA
|
N:CYS333
|
4.9
|
15.5
|
1.0
|
CA
|
N:CYS338
|
5.0
|
17.0
|
1.0
|
|
Iron binding site 10 out
of 16 in 7qhm
Go back to
Iron Binding Sites List in 7qhm
Iron binding site 10 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (Stigmatellin and Azide Bound) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe503
b:20.5
occ:1.00
|
FE2
|
N:FES503
|
0.0
|
20.5
|
1.0
|
ND1
|
N:HIS335
|
2.2
|
14.2
|
1.0
|
ND1
|
N:HIS355
|
2.2
|
16.0
|
1.0
|
S1
|
N:FES503
|
2.2
|
20.5
|
1.0
|
S2
|
N:FES503
|
2.2
|
20.5
|
1.0
|
FE1
|
N:FES503
|
2.7
|
20.5
|
1.0
|
HB3
|
N:HIS335
|
2.8
|
14.2
|
1.0
|
HB2
|
N:HIS355
|
2.9
|
16.0
|
1.0
|
CE1
|
N:HIS335
|
3.1
|
14.2
|
1.0
|
CE1
|
N:HIS355
|
3.1
|
16.0
|
1.0
|
CG
|
N:HIS335
|
3.1
|
14.2
|
1.0
|
CG
|
N:HIS355
|
3.2
|
16.0
|
1.0
|
HG12
|
N:ILE336
|
3.2
|
18.0
|
1.0
|
HE1
|
N:HIS355
|
3.3
|
16.0
|
1.0
|
HE1
|
N:HIS335
|
3.3
|
14.2
|
1.0
|
CB
|
N:HIS335
|
3.4
|
14.2
|
1.0
|
H
|
N:HIS355
|
3.4
|
16.0
|
1.0
|
CB
|
N:HIS355
|
3.5
|
16.0
|
1.0
|
H
|
N:ILE336
|
3.5
|
18.0
|
1.0
|
HB2
|
N:CYS354
|
3.6
|
15.7
|
1.0
|
HB2
|
N:HIS335
|
3.8
|
14.2
|
1.0
|
HG2
|
N:PRO371
|
3.9
|
16.5
|
1.0
|
N
|
N:HIS355
|
3.9
|
16.0
|
1.0
|
HB3
|
N:CYS354
|
4.0
|
15.7
|
1.0
|
HG
|
N:SER357
|
4.1
|
14.4
|
1.0
|
CG1
|
N:ILE336
|
4.1
|
18.0
|
1.0
|
HG13
|
N:ILE336
|
4.1
|
18.0
|
1.0
|
NE2
|
N:HIS335
|
4.2
|
14.2
|
1.0
|
CA
|
N:HIS355
|
4.2
|
16.0
|
1.0
|
N
|
N:ILE336
|
4.2
|
18.0
|
1.0
|
NE2
|
N:HIS355
|
4.3
|
16.0
|
1.0
|
CD2
|
N:HIS335
|
4.3
|
14.2
|
1.0
|
HB3
|
N:HIS355
|
4.3
|
16.0
|
1.0
|
CB
|
N:CYS354
|
4.3
|
15.7
|
1.0
|
CD2
|
N:HIS355
|
4.3
|
16.0
|
1.0
|
SG
|
N:CYS352
|
4.4
|
15.5
|
1.0
|
SG
|
N:CYS333
|
4.4
|
15.5
|
1.0
|
HG3
|
N:PRO371
|
4.5
|
16.5
|
1.0
|
HD13
|
N:ILE336
|
4.6
|
18.0
|
1.0
|
CG
|
N:PRO371
|
4.6
|
16.5
|
1.0
|
CA
|
N:HIS335
|
4.7
|
14.2
|
1.0
|
HB2
|
N:CYS338
|
4.7
|
17.0
|
1.0
|
C
|
N:CYS354
|
4.7
|
15.7
|
1.0
|
CD1
|
N:ILE336
|
4.8
|
18.0
|
1.0
|
HD11
|
N:ILE336
|
4.8
|
18.0
|
1.0
|
OG
|
N:SER357
|
4.8
|
14.4
|
1.0
|
C
|
N:HIS355
|
4.9
|
16.0
|
1.0
|
HD2
|
N:PRO371
|
4.9
|
16.5
|
1.0
|
C
|
N:HIS335
|
4.9
|
14.2
|
1.0
|
HB3
|
N:CYS352
|
4.9
|
15.5
|
1.0
|
H
|
N:CYS338
|
5.0
|
17.0
|
1.0
|
|
Reference:
W.C.Kao,
C.Ortmann De Percin Northumberland,
T.C.Cheng,
J.Ortiz,
A.Durand,
O.Von Loeffelholz,
O.Schilling,
M.L.Biniossek,
B.P.Klaholz,
C.Hunte.
Structural Basis For Safe and Efficient Energy Conversion in A Respiratory Supercomplex. Nat Commun V. 13 545 2022.
ISSN: ESSN 2041-1723
PubMed: 35087070
DOI: 10.1038/S41467-022-28179-X
Page generated: Thu Aug 8 19:52:51 2024
|