Iron in PDB 7qho: Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)
Enzymatic activity of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)
All present enzymatic activity of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated):
7.1.1.8;
7.1.1.9;
Other elements in 7qho:
The structure of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)
(pdb code 7qho). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated), PDB code: 7qho:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 7qho
Go back to
Iron Binding Sites List in 7qho
Iron binding site 1 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:45.4
occ:1.00
|
FE1
|
A:FES501
|
0.0
|
45.4
|
1.0
|
SG
|
A:CYS352
|
2.2
|
40.3
|
1.0
|
S1
|
A:FES501
|
2.2
|
45.4
|
1.0
|
S2
|
A:FES501
|
2.2
|
45.4
|
1.0
|
SG
|
A:CYS333
|
2.3
|
41.0
|
1.0
|
FE2
|
A:FES501
|
2.7
|
45.4
|
1.0
|
HB3
|
A:CYS333
|
3.1
|
41.0
|
1.0
|
HB2
|
A:CYS333
|
3.1
|
41.0
|
1.0
|
CB
|
A:CYS333
|
3.1
|
41.0
|
1.0
|
HB3
|
A:CYS352
|
3.1
|
40.3
|
1.0
|
CB
|
A:CYS352
|
3.1
|
40.3
|
1.0
|
HB3
|
A:HIS335
|
3.2
|
41.3
|
1.0
|
HB2
|
A:CYS352
|
3.3
|
40.3
|
1.0
|
HB2
|
A:CYS338
|
3.6
|
43.3
|
1.0
|
HB2
|
A:SER357
|
3.7
|
41.1
|
1.0
|
HB2
|
A:CYS354
|
3.7
|
43.7
|
1.0
|
H
|
A:ILE336
|
3.9
|
42.1
|
1.0
|
H
|
A:HIS355
|
4.0
|
42.5
|
1.0
|
HG
|
A:SER357
|
4.0
|
41.1
|
1.0
|
CB
|
A:HIS335
|
4.1
|
41.3
|
1.0
|
H
|
A:CYS338
|
4.2
|
43.3
|
1.0
|
OG
|
A:SER357
|
4.2
|
41.1
|
1.0
|
H
|
A:HIS335
|
4.2
|
41.3
|
1.0
|
H
|
A:SER357
|
4.3
|
41.1
|
1.0
|
H
|
A:GLY337
|
4.4
|
42.4
|
1.0
|
HB2
|
A:HIS335
|
4.4
|
41.3
|
1.0
|
ND1
|
A:HIS335
|
4.4
|
41.3
|
1.0
|
CB
|
A:SER357
|
4.4
|
41.1
|
1.0
|
CA
|
A:CYS333
|
4.5
|
41.0
|
1.0
|
CB
|
A:CYS338
|
4.6
|
43.3
|
1.0
|
H
|
A:CYS354
|
4.6
|
43.7
|
1.0
|
ND1
|
A:HIS355
|
4.6
|
42.5
|
1.0
|
CA
|
A:CYS352
|
4.6
|
40.3
|
1.0
|
HG22
|
A:THR340
|
4.7
|
41.3
|
1.0
|
CB
|
A:CYS354
|
4.7
|
43.7
|
1.0
|
HE2
|
A:PHE359
|
4.7
|
41.0
|
1.0
|
HB2
|
A:HIS355
|
4.7
|
42.5
|
1.0
|
N
|
A:ILE336
|
4.7
|
42.1
|
1.0
|
CG
|
A:HIS335
|
4.8
|
41.3
|
1.0
|
HB
|
A:ILE336
|
4.8
|
42.1
|
1.0
|
N
|
A:HIS355
|
4.8
|
42.5
|
1.0
|
N
|
A:CYS338
|
4.8
|
43.3
|
1.0
|
HZ
|
A:PHE359
|
4.8
|
41.0
|
1.0
|
O
|
A:CYS338
|
4.9
|
43.3
|
1.0
|
HA
|
A:CYS333
|
4.9
|
41.0
|
1.0
|
HA
|
A:CYS352
|
4.9
|
40.3
|
1.0
|
N
|
A:HIS335
|
4.9
|
41.3
|
1.0
|
HB3
|
A:CYS354
|
5.0
|
43.7
|
1.0
|
|
Iron binding site 2 out
of 16 in 7qho
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Iron Binding Sites List in 7qho
Iron binding site 2 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:45.4
occ:1.00
|
FE2
|
A:FES501
|
0.0
|
45.4
|
1.0
|
ND1
|
A:HIS355
|
2.1
|
42.5
|
1.0
|
ND1
|
A:HIS335
|
2.2
|
41.3
|
1.0
|
S1
|
A:FES501
|
2.2
|
45.4
|
1.0
|
S2
|
A:FES501
|
2.3
|
45.4
|
1.0
|
FE1
|
A:FES501
|
2.7
|
45.4
|
1.0
|
HB3
|
A:HIS335
|
2.8
|
41.3
|
1.0
|
HB2
|
A:HIS355
|
3.0
|
42.5
|
1.0
|
CE1
|
A:HIS355
|
3.0
|
42.5
|
1.0
|
CE1
|
A:HIS335
|
3.1
|
41.3
|
1.0
|
CG
|
A:HIS355
|
3.2
|
42.5
|
1.0
|
CG
|
A:HIS335
|
3.2
|
41.3
|
1.0
|
HE1
|
A:HIS355
|
3.2
|
42.5
|
1.0
|
HB
|
A:ILE336
|
3.2
|
42.1
|
1.0
|
HE1
|
A:HIS335
|
3.3
|
41.3
|
1.0
|
CB
|
A:HIS335
|
3.5
|
41.3
|
1.0
|
CB
|
A:HIS355
|
3.5
|
42.5
|
1.0
|
H
|
A:ILE336
|
3.6
|
42.1
|
1.0
|
H
|
A:HIS355
|
3.7
|
42.5
|
1.0
|
HB2
|
A:CYS354
|
3.8
|
43.7
|
1.0
|
HB2
|
A:HIS335
|
4.0
|
41.3
|
1.0
|
N
|
A:HIS355
|
4.1
|
42.5
|
1.0
|
HG
|
A:SER357
|
4.1
|
41.1
|
1.0
|
N
|
A:ILE336
|
4.1
|
42.1
|
1.0
|
CB
|
A:ILE336
|
4.1
|
42.1
|
1.0
|
HG12
|
A:ILE336
|
4.1
|
42.1
|
1.0
|
HB3
|
A:CYS354
|
4.2
|
43.7
|
1.0
|
NE2
|
A:HIS355
|
4.2
|
42.5
|
1.0
|
NE2
|
A:HIS335
|
4.2
|
41.3
|
1.0
|
CD2
|
A:HIS355
|
4.2
|
42.5
|
1.0
|
SG
|
A:CYS333
|
4.3
|
41.0
|
1.0
|
CD2
|
A:HIS335
|
4.3
|
41.3
|
1.0
|
HB3
|
A:HIS355
|
4.3
|
42.5
|
1.0
|
HG13
|
A:ILE336
|
4.3
|
42.1
|
1.0
|
HG2
|
A:PRO371
|
4.3
|
41.7
|
1.0
|
CA
|
A:HIS355
|
4.3
|
42.5
|
1.0
|
SG
|
A:CYS352
|
4.4
|
40.3
|
1.0
|
CB
|
A:CYS354
|
4.4
|
43.7
|
1.0
|
CG1
|
A:ILE336
|
4.4
|
42.1
|
1.0
|
HB2
|
A:PRO371
|
4.5
|
41.7
|
1.0
|
OG
|
A:SER357
|
4.5
|
41.1
|
1.0
|
CA
|
A:HIS335
|
4.7
|
41.3
|
1.0
|
CA
|
A:ILE336
|
4.7
|
42.1
|
1.0
|
HD2
|
A:PRO371
|
4.7
|
41.7
|
1.0
|
C
|
A:HIS335
|
4.8
|
41.3
|
1.0
|
HB2
|
A:CYS338
|
4.9
|
43.3
|
1.0
|
C
|
A:CYS354
|
4.9
|
43.7
|
1.0
|
H
|
A:HIS335
|
4.9
|
41.3
|
1.0
|
HE2
|
A:HIS355
|
4.9
|
42.5
|
1.0
|
H
|
A:GLY337
|
4.9
|
42.4
|
1.0
|
C
|
A:HIS355
|
4.9
|
42.5
|
1.0
|
H
|
A:CYS338
|
5.0
|
43.3
|
1.0
|
HB3
|
A:CYS333
|
5.0
|
41.0
|
1.0
|
|
Iron binding site 3 out
of 16 in 7qho
Go back to
Iron Binding Sites List in 7qho
Iron binding site 3 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe602
b:34.0
occ:1.00
|
FE
|
B:HEM602
|
0.0
|
34.0
|
1.0
|
NB
|
B:HEM602
|
2.0
|
34.0
|
1.0
|
NA
|
B:HEM602
|
2.0
|
34.0
|
1.0
|
ND
|
B:HEM602
|
2.0
|
34.0
|
1.0
|
NC
|
B:HEM602
|
2.1
|
34.0
|
1.0
|
NE2
|
B:HIS204
|
2.1
|
34.3
|
1.0
|
NE2
|
B:HIS103
|
2.2
|
34.5
|
1.0
|
CE1
|
B:HIS204
|
2.8
|
34.3
|
1.0
|
HE1
|
B:HIS204
|
2.8
|
34.3
|
1.0
|
C1B
|
B:HEM602
|
3.0
|
34.0
|
1.0
|
C4D
|
B:HEM602
|
3.0
|
34.0
|
1.0
|
C4A
|
B:HEM602
|
3.0
|
34.0
|
1.0
|
C4B
|
B:HEM602
|
3.0
|
34.0
|
1.0
|
C1A
|
B:HEM602
|
3.0
|
34.0
|
1.0
|
C1C
|
B:HEM602
|
3.1
|
34.0
|
1.0
|
C1D
|
B:HEM602
|
3.1
|
34.0
|
1.0
|
C4C
|
B:HEM602
|
3.1
|
34.0
|
1.0
|
CE1
|
B:HIS103
|
3.2
|
34.5
|
1.0
|
CD2
|
B:HIS103
|
3.2
|
34.5
|
1.0
|
CD2
|
B:HIS204
|
3.3
|
34.3
|
1.0
|
HE1
|
B:HIS103
|
3.3
|
34.5
|
1.0
|
CHB
|
B:HEM602
|
3.4
|
34.0
|
1.0
|
HD2
|
B:HIS103
|
3.4
|
34.5
|
1.0
|
CHA
|
B:HEM602
|
3.4
|
34.0
|
1.0
|
CHC
|
B:HEM602
|
3.4
|
34.0
|
1.0
|
CHD
|
B:HEM602
|
3.5
|
34.0
|
1.0
|
HD2
|
B:HIS204
|
3.6
|
34.3
|
1.0
|
ND1
|
B:HIS204
|
4.0
|
34.3
|
1.0
|
C3A
|
B:HEM602
|
4.2
|
34.0
|
1.0
|
C3D
|
B:HEM602
|
4.2
|
34.0
|
1.0
|
C2B
|
B:HEM602
|
4.2
|
34.0
|
1.0
|
C2A
|
B:HEM602
|
4.2
|
34.0
|
1.0
|
C3B
|
B:HEM602
|
4.3
|
34.0
|
1.0
|
C2D
|
B:HEM602
|
4.3
|
34.0
|
1.0
|
CG
|
B:HIS204
|
4.3
|
34.3
|
1.0
|
C2C
|
B:HEM602
|
4.3
|
34.0
|
1.0
|
ND1
|
B:HIS103
|
4.3
|
34.5
|
1.0
|
C3C
|
B:HEM602
|
4.3
|
34.0
|
1.0
|
CG
|
B:HIS103
|
4.4
|
34.5
|
1.0
|
HA3
|
B:GLY152
|
4.4
|
36.2
|
1.0
|
HHB
|
B:HEM602
|
4.4
|
34.0
|
1.0
|
HHA
|
B:HEM602
|
4.4
|
34.0
|
1.0
|
HHC
|
B:HEM602
|
4.4
|
34.0
|
1.0
|
HHD
|
B:HEM602
|
4.4
|
34.0
|
1.0
|
HA2
|
B:GLY152
|
4.6
|
36.2
|
1.0
|
HD22
|
B:LEU47
|
4.6
|
34.4
|
1.0
|
HA3
|
B:GLY51
|
4.7
|
34.1
|
1.0
|
HA2
|
B:GLY51
|
4.7
|
34.1
|
1.0
|
HD1
|
B:HIS204
|
4.7
|
34.3
|
1.0
|
CA
|
B:GLY152
|
5.0
|
36.2
|
1.0
|
|
Iron binding site 4 out
of 16 in 7qho
Go back to
Iron Binding Sites List in 7qho
Iron binding site 4 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe603
b:35.6
occ:1.00
|
FE
|
B:HEM603
|
0.0
|
35.6
|
1.0
|
NB
|
B:HEM603
|
2.0
|
35.6
|
1.0
|
NA
|
B:HEM603
|
2.0
|
35.6
|
1.0
|
ND
|
B:HEM603
|
2.0
|
35.6
|
1.0
|
NC
|
B:HEM603
|
2.1
|
35.6
|
1.0
|
NE2
|
B:HIS219
|
2.3
|
35.1
|
1.0
|
NE2
|
B:HIS117
|
2.3
|
36.1
|
1.0
|
HD2
|
B:HIS117
|
2.9
|
36.1
|
1.0
|
CD2
|
B:HIS117
|
3.0
|
36.1
|
1.0
|
C4A
|
B:HEM603
|
3.0
|
35.6
|
1.0
|
C4C
|
B:HEM603
|
3.0
|
35.6
|
1.0
|
C1C
|
B:HEM603
|
3.0
|
35.6
|
1.0
|
C4D
|
B:HEM603
|
3.0
|
35.6
|
1.0
|
C1D
|
B:HEM603
|
3.0
|
35.6
|
1.0
|
C1B
|
B:HEM603
|
3.0
|
35.6
|
1.0
|
C1A
|
B:HEM603
|
3.0
|
35.6
|
1.0
|
C4B
|
B:HEM603
|
3.0
|
35.6
|
1.0
|
CD2
|
B:HIS219
|
3.2
|
35.1
|
1.0
|
CE1
|
B:HIS219
|
3.3
|
35.1
|
1.0
|
HD2
|
B:HIS219
|
3.3
|
35.1
|
1.0
|
CHB
|
B:HEM603
|
3.4
|
35.6
|
1.0
|
CHD
|
B:HEM603
|
3.4
|
35.6
|
1.0
|
CHA
|
B:HEM603
|
3.4
|
35.6
|
1.0
|
CHC
|
B:HEM603
|
3.4
|
35.6
|
1.0
|
HE1
|
B:HIS219
|
3.5
|
35.1
|
1.0
|
CE1
|
B:HIS117
|
3.5
|
36.1
|
1.0
|
HE1
|
B:HIS117
|
3.9
|
36.1
|
1.0
|
C3C
|
B:HEM603
|
4.2
|
35.6
|
1.0
|
C2C
|
B:HEM603
|
4.2
|
35.6
|
1.0
|
C3A
|
B:HEM603
|
4.2
|
35.6
|
1.0
|
C3D
|
B:HEM603
|
4.2
|
35.6
|
1.0
|
CG
|
B:HIS117
|
4.2
|
36.1
|
1.0
|
C2D
|
B:HEM603
|
4.2
|
35.6
|
1.0
|
C2A
|
B:HEM603
|
4.2
|
35.6
|
1.0
|
C2B
|
B:HEM603
|
4.3
|
35.6
|
1.0
|
C3B
|
B:HEM603
|
4.3
|
35.6
|
1.0
|
HHB
|
B:HEM603
|
4.4
|
35.6
|
1.0
|
HHD
|
B:HEM603
|
4.4
|
35.6
|
1.0
|
ND1
|
B:HIS219
|
4.4
|
35.1
|
1.0
|
CG
|
B:HIS219
|
4.4
|
35.1
|
1.0
|
HHA
|
B:HEM603
|
4.4
|
35.6
|
1.0
|
HHC
|
B:HEM603
|
4.4
|
35.6
|
1.0
|
ND1
|
B:HIS117
|
4.5
|
36.1
|
1.0
|
HG13
|
B:ILE121
|
4.5
|
35.9
|
1.0
|
HD11
|
B:ILE121
|
4.7
|
35.9
|
1.0
|
HG21
|
B:VAL223
|
4.7
|
37.5
|
1.0
|
HA3
|
B:GLY37
|
4.8
|
36.9
|
1.0
|
|
Iron binding site 5 out
of 16 in 7qho
Go back to
Iron Binding Sites List in 7qho
Iron binding site 5 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe302
b:40.4
occ:1.00
|
FE
|
C:HEC302
|
0.0
|
40.4
|
1.0
|
ND
|
C:HEC302
|
2.0
|
40.4
|
1.0
|
NA
|
C:HEC302
|
2.0
|
40.4
|
1.0
|
NC
|
C:HEC302
|
2.0
|
40.4
|
1.0
|
NB
|
C:HEC302
|
2.0
|
40.4
|
1.0
|
NE2
|
C:HIS71
|
2.3
|
41.6
|
1.0
|
SD
|
C:MET102
|
2.5
|
39.4
|
1.0
|
C1D
|
C:HEC302
|
3.0
|
40.4
|
1.0
|
C1C
|
C:HEC302
|
3.0
|
40.4
|
1.0
|
C4C
|
C:HEC302
|
3.0
|
40.4
|
1.0
|
C4D
|
C:HEC302
|
3.0
|
40.4
|
1.0
|
C4A
|
C:HEC302
|
3.1
|
40.4
|
1.0
|
C4B
|
C:HEC302
|
3.1
|
40.4
|
1.0
|
C1A
|
C:HEC302
|
3.1
|
40.4
|
1.0
|
C1B
|
C:HEC302
|
3.1
|
40.4
|
1.0
|
CE1
|
C:HIS71
|
3.2
|
41.6
|
1.0
|
HG3
|
C:MET102
|
3.3
|
39.4
|
1.0
|
CD2
|
C:HIS71
|
3.4
|
41.6
|
1.0
|
HE1
|
C:HIS71
|
3.4
|
41.6
|
1.0
|
CHC
|
C:HEC302
|
3.4
|
40.4
|
1.0
|
CHD
|
C:HEC302
|
3.4
|
40.4
|
1.0
|
CHB
|
C:HEC302
|
3.4
|
40.4
|
1.0
|
CHA
|
C:HEC302
|
3.4
|
40.4
|
1.0
|
CG
|
C:MET102
|
3.5
|
39.4
|
1.0
|
HD2
|
C:HIS71
|
3.5
|
41.6
|
1.0
|
CE
|
C:MET102
|
3.6
|
39.4
|
1.0
|
HE3
|
C:MET102
|
3.7
|
39.4
|
1.0
|
HE1
|
C:MET102
|
3.8
|
39.4
|
1.0
|
HB3
|
C:MET102
|
3.9
|
39.4
|
1.0
|
C2C
|
C:HEC302
|
4.2
|
40.4
|
1.0
|
C3C
|
C:HEC302
|
4.2
|
40.4
|
1.0
|
C2D
|
C:HEC302
|
4.3
|
40.4
|
1.0
|
HG2
|
C:MET102
|
4.3
|
39.4
|
1.0
|
C3D
|
C:HEC302
|
4.3
|
40.4
|
1.0
|
C3A
|
C:HEC302
|
4.3
|
40.4
|
1.0
|
C2A
|
C:HEC302
|
4.3
|
40.4
|
1.0
|
C2B
|
C:HEC302
|
4.3
|
40.4
|
1.0
|
C3B
|
C:HEC302
|
4.3
|
40.4
|
1.0
|
CB
|
C:MET102
|
4.3
|
39.4
|
1.0
|
HHC
|
C:HEC302
|
4.4
|
40.4
|
1.0
|
HHB
|
C:HEC302
|
4.4
|
40.4
|
1.0
|
HHA
|
C:HEC302
|
4.4
|
40.4
|
1.0
|
HHD
|
C:HEC302
|
4.4
|
40.4
|
1.0
|
ND1
|
C:HIS71
|
4.4
|
41.6
|
1.0
|
HD21
|
C:LEU85
|
4.4
|
42.8
|
1.0
|
HE2
|
C:MET102
|
4.5
|
39.4
|
1.0
|
CG
|
C:HIS71
|
4.5
|
41.6
|
1.0
|
HD11
|
C:LEU85
|
4.5
|
42.8
|
1.0
|
HA
|
C:PRO103
|
4.7
|
40.3
|
1.0
|
HD2
|
C:PRO83
|
4.7
|
41.0
|
1.0
|
H
|
C:ILE104
|
4.9
|
40.3
|
1.0
|
HB2
|
C:CYS70
|
4.9
|
42.5
|
1.0
|
HB3
|
C:CYS70
|
4.9
|
42.5
|
1.0
|
HB3
|
C:CYS67
|
4.9
|
44.0
|
1.0
|
HD12
|
C:ILE104
|
5.0
|
40.3
|
1.0
|
HA
|
C:MET102
|
5.0
|
39.4
|
1.0
|
HB2
|
C:MET102
|
5.0
|
39.4
|
1.0
|
|
Iron binding site 6 out
of 16 in 7qho
Go back to
Iron Binding Sites List in 7qho
Iron binding site 6 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe303
b:39.8
occ:1.00
|
FE
|
C:HEC303
|
0.0
|
39.8
|
1.0
|
NB
|
C:HEC303
|
2.0
|
39.8
|
1.0
|
NA
|
C:HEC303
|
2.0
|
39.8
|
1.0
|
NC
|
C:HEC303
|
2.0
|
39.8
|
1.0
|
ND
|
C:HEC303
|
2.0
|
39.8
|
1.0
|
SD
|
C:MET218
|
2.3
|
39.1
|
1.0
|
NE2
|
C:HIS181
|
2.5
|
38.5
|
1.0
|
C1B
|
C:HEC303
|
3.0
|
39.8
|
1.0
|
C1C
|
C:HEC303
|
3.0
|
39.8
|
1.0
|
C4B
|
C:HEC303
|
3.0
|
39.8
|
1.0
|
C4A
|
C:HEC303
|
3.0
|
39.8
|
1.0
|
C4C
|
C:HEC303
|
3.0
|
39.8
|
1.0
|
C1A
|
C:HEC303
|
3.1
|
39.8
|
1.0
|
C1D
|
C:HEC303
|
3.1
|
39.8
|
1.0
|
C4D
|
C:HEC303
|
3.1
|
39.8
|
1.0
|
CHB
|
C:HEC303
|
3.4
|
39.8
|
1.0
|
CHC
|
C:HEC303
|
3.4
|
39.8
|
1.0
|
CE1
|
C:HIS181
|
3.4
|
38.5
|
1.0
|
CHD
|
C:HEC303
|
3.4
|
39.8
|
1.0
|
CHA
|
C:HEC303
|
3.5
|
39.8
|
1.0
|
CE
|
C:MET218
|
3.5
|
39.1
|
1.0
|
HE1
|
C:HIS181
|
3.5
|
38.5
|
1.0
|
HE1
|
C:MET218
|
3.6
|
39.1
|
1.0
|
HG3
|
C:MET218
|
3.6
|
39.1
|
1.0
|
CD2
|
C:HIS181
|
3.6
|
38.5
|
1.0
|
CG
|
C:MET218
|
3.6
|
39.1
|
1.0
|
HE3
|
C:MET218
|
3.6
|
39.1
|
1.0
|
HD2
|
C:HIS181
|
3.8
|
38.5
|
1.0
|
HB2
|
C:MET218
|
3.8
|
39.1
|
1.0
|
C2B
|
C:HEC303
|
4.2
|
39.8
|
1.0
|
C2C
|
C:HEC303
|
4.2
|
39.8
|
1.0
|
C3B
|
C:HEC303
|
4.3
|
39.8
|
1.0
|
C3C
|
C:HEC303
|
4.3
|
39.8
|
1.0
|
C3A
|
C:HEC303
|
4.3
|
39.8
|
1.0
|
C2A
|
C:HEC303
|
4.3
|
39.8
|
1.0
|
CB
|
C:MET218
|
4.3
|
39.1
|
1.0
|
C2D
|
C:HEC303
|
4.3
|
39.8
|
1.0
|
C3D
|
C:HEC303
|
4.3
|
39.8
|
1.0
|
HE2
|
C:MET218
|
4.3
|
39.1
|
1.0
|
HG2
|
C:MET218
|
4.4
|
39.1
|
1.0
|
HHC
|
C:HEC303
|
4.4
|
39.8
|
1.0
|
HHB
|
C:HEC303
|
4.4
|
39.8
|
1.0
|
HD21
|
C:LEU199
|
4.4
|
40.2
|
1.0
|
HHD
|
C:HEC303
|
4.4
|
39.8
|
1.0
|
HHA
|
C:HEC303
|
4.4
|
39.8
|
1.0
|
ND1
|
C:HIS181
|
4.6
|
38.5
|
1.0
|
CG
|
C:HIS181
|
4.7
|
38.5
|
1.0
|
HB3
|
C:MET218
|
4.9
|
39.1
|
1.0
|
HB1
|
C:ALA196
|
4.9
|
38.9
|
1.0
|
HD2
|
C:PRO197
|
5.0
|
38.9
|
1.0
|
|
Iron binding site 7 out
of 16 in 7qho
Go back to
Iron Binding Sites List in 7qho
Iron binding site 7 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe601
b:41.5
occ:1.00
|
FE
|
D:HAS601
|
0.0
|
41.5
|
1.0
|
NE2
|
D:HIS400
|
2.0
|
41.6
|
1.0
|
NA
|
D:HAS601
|
2.0
|
41.5
|
1.0
|
NC
|
D:HAS601
|
2.0
|
41.5
|
1.0
|
NB
|
D:HAS601
|
2.0
|
41.5
|
1.0
|
ND
|
D:HAS601
|
2.0
|
41.5
|
1.0
|
NE2
|
D:HIS87
|
2.2
|
39.7
|
1.0
|
CE1
|
D:HIS400
|
2.7
|
41.6
|
1.0
|
HE1
|
D:HIS400
|
2.8
|
41.6
|
1.0
|
C1D
|
D:HAS601
|
3.0
|
41.5
|
1.0
|
C1B
|
D:HAS601
|
3.0
|
41.5
|
1.0
|
C4D
|
D:HAS601
|
3.0
|
41.5
|
1.0
|
CE1
|
D:HIS87
|
3.0
|
39.7
|
1.0
|
C1C
|
D:HAS601
|
3.0
|
41.5
|
1.0
|
C1A
|
D:HAS601
|
3.1
|
41.5
|
1.0
|
C4A
|
D:HAS601
|
3.1
|
41.5
|
1.0
|
C4C
|
D:HAS601
|
3.1
|
41.5
|
1.0
|
C4B
|
D:HAS601
|
3.1
|
41.5
|
1.0
|
HE1
|
D:HIS87
|
3.1
|
39.7
|
1.0
|
CD2
|
D:HIS400
|
3.1
|
41.6
|
1.0
|
CD2
|
D:HIS87
|
3.3
|
39.7
|
1.0
|
CHB
|
D:HAS601
|
3.4
|
41.5
|
1.0
|
CHA
|
D:HAS601
|
3.4
|
41.5
|
1.0
|
CHC
|
D:HAS601
|
3.4
|
41.5
|
1.0
|
CHD
|
D:HAS601
|
3.4
|
41.5
|
1.0
|
HD2
|
D:HIS400
|
3.5
|
41.6
|
1.0
|
HD2
|
D:HIS87
|
3.5
|
39.7
|
1.0
|
ND1
|
D:HIS400
|
3.9
|
41.6
|
1.0
|
CG
|
D:HIS400
|
4.1
|
41.6
|
1.0
|
C2D
|
D:HAS601
|
4.2
|
41.5
|
1.0
|
C3D
|
D:HAS601
|
4.2
|
41.5
|
1.0
|
ND1
|
D:HIS87
|
4.2
|
39.7
|
1.0
|
C2B
|
D:HAS601
|
4.2
|
41.5
|
1.0
|
C2A
|
D:HAS601
|
4.3
|
41.5
|
1.0
|
C2C
|
D:HAS601
|
4.3
|
41.5
|
1.0
|
C3A
|
D:HAS601
|
4.3
|
41.5
|
1.0
|
C3C
|
D:HAS601
|
4.3
|
41.5
|
1.0
|
C3B
|
D:HAS601
|
4.3
|
41.5
|
1.0
|
HB1
|
D:ALA60
|
4.3
|
41.2
|
1.0
|
HE1
|
D:PHE399
|
4.3
|
42.3
|
1.0
|
HHB
|
D:HAS601
|
4.4
|
41.5
|
1.0
|
HHA
|
D:HAS601
|
4.4
|
41.5
|
1.0
|
CG
|
D:HIS87
|
4.4
|
39.7
|
1.0
|
HHC
|
D:HAS601
|
4.4
|
41.5
|
1.0
|
HHD
|
D:HAS601
|
4.4
|
41.5
|
1.0
|
HZ
|
D:PHE447
|
4.6
|
43.1
|
1.0
|
HD1
|
D:HIS400
|
4.6
|
41.6
|
1.0
|
HG3
|
D:MET91
|
4.8
|
40.4
|
1.0
|
HB2
|
D:ALA60
|
4.9
|
41.2
|
1.0
|
HD1
|
D:HIS87
|
5.0
|
39.7
|
1.0
|
HE1
|
D:PHE447
|
5.0
|
43.1
|
1.0
|
|
Iron binding site 8 out
of 16 in 7qho
Go back to
Iron Binding Sites List in 7qho
Iron binding site 8 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe602
b:46.8
occ:1.00
|
FE
|
D:HAS602
|
0.0
|
46.8
|
1.0
|
ND
|
D:HAS602
|
2.0
|
46.8
|
1.0
|
NC
|
D:HAS602
|
2.0
|
46.8
|
1.0
|
NB
|
D:HAS602
|
2.0
|
46.8
|
1.0
|
NA
|
D:HAS602
|
2.0
|
46.8
|
1.0
|
NE2
|
D:HIS398
|
2.7
|
43.1
|
1.0
|
C4D
|
D:HAS602
|
3.0
|
46.8
|
1.0
|
C1C
|
D:HAS602
|
3.0
|
46.8
|
1.0
|
C1D
|
D:HAS602
|
3.0
|
46.8
|
1.0
|
C1A
|
D:HAS602
|
3.0
|
46.8
|
1.0
|
C1B
|
D:HAS602
|
3.0
|
46.8
|
1.0
|
C4B
|
D:HAS602
|
3.1
|
46.8
|
1.0
|
C4C
|
D:HAS602
|
3.1
|
46.8
|
1.0
|
C4A
|
D:HAS602
|
3.1
|
46.8
|
1.0
|
CHA
|
D:HAS602
|
3.4
|
46.8
|
1.0
|
CHC
|
D:HAS602
|
3.4
|
46.8
|
1.0
|
CHB
|
D:HAS602
|
3.4
|
46.8
|
1.0
|
CHD
|
D:HAS602
|
3.4
|
46.8
|
1.0
|
CE1
|
D:HIS398
|
3.6
|
43.1
|
1.0
|
HE1
|
D:HIS398
|
3.7
|
43.1
|
1.0
|
CD2
|
D:HIS398
|
3.7
|
43.1
|
1.0
|
HD2
|
D:HIS398
|
3.8
|
43.1
|
1.0
|
HG1
|
D:THR402
|
4.1
|
43.7
|
1.0
|
C3D
|
D:HAS602
|
4.2
|
46.8
|
1.0
|
C2D
|
D:HAS602
|
4.2
|
46.8
|
1.0
|
C2C
|
D:HAS602
|
4.3
|
46.8
|
1.0
|
C2B
|
D:HAS602
|
4.3
|
46.8
|
1.0
|
C2A
|
D:HAS602
|
4.3
|
46.8
|
1.0
|
C3C
|
D:HAS602
|
4.3
|
46.8
|
1.0
|
C3B
|
D:HAS602
|
4.3
|
46.8
|
1.0
|
C3A
|
D:HAS602
|
4.3
|
46.8
|
1.0
|
HHA
|
D:HAS602
|
4.3
|
46.8
|
1.0
|
HHC
|
D:HAS602
|
4.4
|
46.8
|
1.0
|
HHB
|
D:HAS602
|
4.4
|
46.8
|
1.0
|
HE1
|
D:HIS315
|
4.4
|
44.3
|
1.0
|
HHD
|
D:HAS602
|
4.4
|
46.8
|
1.0
|
HG21
|
D:VAL268
|
4.5
|
45.0
|
1.0
|
HB3
|
D:PHE399
|
4.5
|
42.3
|
1.0
|
HG21
|
D:THR402
|
4.6
|
43.7
|
1.0
|
HE1
|
D:HIS314
|
4.7
|
46.1
|
1.0
|
ND1
|
D:HIS398
|
4.7
|
43.1
|
1.0
|
CU
|
D:CU603
|
4.7
|
54.1
|
1.0
|
HE1
|
D:HIS265
|
4.8
|
45.1
|
1.0
|
CG
|
D:HIS398
|
4.8
|
43.1
|
1.0
|
HA
|
D:PHE399
|
4.9
|
42.3
|
1.0
|
OG1
|
D:THR402
|
5.0
|
43.7
|
1.0
|
|
Iron binding site 9 out
of 16 in 7qho
Go back to
Iron Binding Sites List in 7qho
Iron binding site 9 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe503
b:45.4
occ:1.00
|
FE1
|
N:FES503
|
0.0
|
45.4
|
1.0
|
SG
|
N:CYS352
|
2.2
|
40.3
|
1.0
|
S1
|
N:FES503
|
2.2
|
45.4
|
1.0
|
S2
|
N:FES503
|
2.2
|
45.4
|
1.0
|
SG
|
N:CYS333
|
2.3
|
41.0
|
1.0
|
FE2
|
N:FES503
|
2.7
|
45.4
|
1.0
|
HB3
|
N:CYS333
|
3.1
|
41.0
|
1.0
|
HB2
|
N:CYS333
|
3.1
|
41.0
|
1.0
|
CB
|
N:CYS333
|
3.1
|
41.0
|
1.0
|
HB3
|
N:CYS352
|
3.1
|
40.3
|
1.0
|
CB
|
N:CYS352
|
3.1
|
40.3
|
1.0
|
HB3
|
N:HIS335
|
3.2
|
41.3
|
1.0
|
HB2
|
N:CYS352
|
3.3
|
40.3
|
1.0
|
HB2
|
N:CYS338
|
3.6
|
43.3
|
1.0
|
HB2
|
N:SER357
|
3.7
|
41.1
|
1.0
|
HB2
|
N:CYS354
|
3.7
|
43.7
|
1.0
|
H
|
N:ILE336
|
3.9
|
42.1
|
1.0
|
H
|
N:HIS355
|
4.0
|
42.5
|
1.0
|
HG
|
N:SER357
|
4.0
|
41.1
|
1.0
|
CB
|
N:HIS335
|
4.1
|
41.3
|
1.0
|
H
|
N:CYS338
|
4.2
|
43.3
|
1.0
|
OG
|
N:SER357
|
4.2
|
41.1
|
1.0
|
H
|
N:HIS335
|
4.2
|
41.3
|
1.0
|
H
|
N:SER357
|
4.3
|
41.1
|
1.0
|
H
|
N:GLY337
|
4.4
|
42.4
|
1.0
|
HB2
|
N:HIS335
|
4.4
|
41.3
|
1.0
|
ND1
|
N:HIS335
|
4.4
|
41.3
|
1.0
|
CB
|
N:SER357
|
4.4
|
41.1
|
1.0
|
CA
|
N:CYS333
|
4.5
|
41.0
|
1.0
|
CB
|
N:CYS338
|
4.5
|
43.3
|
1.0
|
H
|
N:CYS354
|
4.6
|
43.7
|
1.0
|
ND1
|
N:HIS355
|
4.6
|
42.5
|
1.0
|
CA
|
N:CYS352
|
4.6
|
40.3
|
1.0
|
HG22
|
N:THR340
|
4.7
|
41.3
|
1.0
|
CB
|
N:CYS354
|
4.7
|
43.7
|
1.0
|
HE2
|
N:PHE359
|
4.7
|
41.0
|
1.0
|
HB2
|
N:HIS355
|
4.7
|
42.5
|
1.0
|
N
|
N:ILE336
|
4.7
|
42.1
|
1.0
|
CG
|
N:HIS335
|
4.8
|
41.3
|
1.0
|
HB
|
N:ILE336
|
4.8
|
42.1
|
1.0
|
N
|
N:HIS355
|
4.8
|
42.5
|
1.0
|
N
|
N:CYS338
|
4.8
|
43.3
|
1.0
|
HZ
|
N:PHE359
|
4.8
|
41.0
|
1.0
|
O
|
N:CYS338
|
4.9
|
43.3
|
1.0
|
HA
|
N:CYS333
|
4.9
|
41.0
|
1.0
|
HA
|
N:CYS352
|
4.9
|
40.3
|
1.0
|
N
|
N:HIS335
|
4.9
|
41.3
|
1.0
|
HB3
|
N:CYS354
|
5.0
|
43.7
|
1.0
|
|
Iron binding site 10 out
of 16 in 7qho
Go back to
Iron Binding Sites List in 7qho
Iron binding site 10 out
of 16 in the Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cytochrome Bcc-AA3 Supercomplex (Respiratory Supercomplex III2/IV2) From Corynebacterium Glutamicum (As Isolated) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe503
b:45.4
occ:1.00
|
FE2
|
N:FES503
|
0.0
|
45.4
|
1.0
|
ND1
|
N:HIS355
|
2.1
|
42.5
|
1.0
|
ND1
|
N:HIS335
|
2.2
|
41.3
|
1.0
|
S1
|
N:FES503
|
2.2
|
45.4
|
1.0
|
S2
|
N:FES503
|
2.3
|
45.4
|
1.0
|
FE1
|
N:FES503
|
2.7
|
45.4
|
1.0
|
HB3
|
N:HIS335
|
2.8
|
41.3
|
1.0
|
HB2
|
N:HIS355
|
2.9
|
42.5
|
1.0
|
CE1
|
N:HIS355
|
3.0
|
42.5
|
1.0
|
CE1
|
N:HIS335
|
3.1
|
41.3
|
1.0
|
CG
|
N:HIS355
|
3.2
|
42.5
|
1.0
|
CG
|
N:HIS335
|
3.2
|
41.3
|
1.0
|
HE1
|
N:HIS355
|
3.2
|
42.5
|
1.0
|
HB
|
N:ILE336
|
3.2
|
42.1
|
1.0
|
HE1
|
N:HIS335
|
3.3
|
41.3
|
1.0
|
CB
|
N:HIS335
|
3.5
|
41.3
|
1.0
|
CB
|
N:HIS355
|
3.5
|
42.5
|
1.0
|
H
|
N:ILE336
|
3.6
|
42.1
|
1.0
|
H
|
N:HIS355
|
3.7
|
42.5
|
1.0
|
HB2
|
N:CYS354
|
3.8
|
43.7
|
1.0
|
HB2
|
N:HIS335
|
4.0
|
41.3
|
1.0
|
N
|
N:HIS355
|
4.1
|
42.5
|
1.0
|
HG
|
N:SER357
|
4.1
|
41.1
|
1.0
|
N
|
N:ILE336
|
4.1
|
42.1
|
1.0
|
CB
|
N:ILE336
|
4.1
|
42.1
|
1.0
|
HG12
|
N:ILE336
|
4.1
|
42.1
|
1.0
|
HB3
|
N:CYS354
|
4.2
|
43.7
|
1.0
|
NE2
|
N:HIS355
|
4.2
|
42.5
|
1.0
|
NE2
|
N:HIS335
|
4.2
|
41.3
|
1.0
|
CD2
|
N:HIS355
|
4.2
|
42.5
|
1.0
|
SG
|
N:CYS333
|
4.3
|
41.0
|
1.0
|
CD2
|
N:HIS335
|
4.3
|
41.3
|
1.0
|
HB3
|
N:HIS355
|
4.3
|
42.5
|
1.0
|
HG13
|
N:ILE336
|
4.3
|
42.1
|
1.0
|
HG2
|
N:PRO371
|
4.3
|
41.7
|
1.0
|
CA
|
N:HIS355
|
4.3
|
42.5
|
1.0
|
SG
|
N:CYS352
|
4.4
|
40.3
|
1.0
|
CB
|
N:CYS354
|
4.4
|
43.7
|
1.0
|
CG1
|
N:ILE336
|
4.4
|
42.1
|
1.0
|
HB2
|
N:PRO371
|
4.5
|
41.7
|
1.0
|
OG
|
N:SER357
|
4.5
|
41.1
|
1.0
|
CA
|
N:HIS335
|
4.7
|
41.3
|
1.0
|
CA
|
N:ILE336
|
4.7
|
42.1
|
1.0
|
HD2
|
N:PRO371
|
4.7
|
41.7
|
1.0
|
C
|
N:HIS335
|
4.8
|
41.3
|
1.0
|
HB2
|
N:CYS338
|
4.9
|
43.3
|
1.0
|
C
|
N:CYS354
|
4.9
|
43.7
|
1.0
|
H
|
N:HIS335
|
4.9
|
41.3
|
1.0
|
HE2
|
N:HIS355
|
4.9
|
42.5
|
1.0
|
H
|
N:GLY337
|
4.9
|
42.4
|
1.0
|
C
|
N:HIS355
|
4.9
|
42.5
|
1.0
|
H
|
N:CYS338
|
5.0
|
43.3
|
1.0
|
HB3
|
N:CYS333
|
5.0
|
41.0
|
1.0
|
|
Reference:
W.-C.Kao,
C.Ortmann De Percin Northumberland,
T.C.Cheng,
J.Ortiz,
A.Durand,
O.Von Loeffelholz,
O.Schilling,
M.L.Biniossek,
B.P.Klaholz,
C.Hunte.
Structural Basis For Safe and Efficient Energy Conversion in A Respiratory Supercomplex Nature Communications V. 13 545 2022.
PubMed: 35087070
DOI: 10.1038/S41467-022-28179-X
Page generated: Thu Aug 8 19:52:50 2024
|