Iron in PDB 7qsd: Bovine Complex I in the Active State at 3.1 A

All present enzymatic activity of Bovine Complex I in the Active State at 3.1 A:
1.6.5.3; 1.6.99.3; 7.1.1.2;

The structure of Bovine Complex I in the Active State at 3.1 A also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Zinc	(Zn)	1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Bovine Complex I in the Active State at 3.1 A (pdb code 7qsd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Bovine Complex I in the Active State at 3.1 A, PDB code: 7qsd:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in the Bovine Complex I in the Active State at 3.1 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Bovine Complex I in the Active State at 3.1 A within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:35.4 occ:1.00 FE1 B:SF4201 0.0 35.4 1.0 SG B:CYS119 2.3 28.9 1.0 S3 B:SF4201 2.3 35.4 1.0 S2 B:SF4201 2.3 35.4 1.0 S4 B:SF4201 2.3 35.4 1.0 FE2 B:SF4201 2.7 35.4 1.0 FE4 B:SF4201 2.7 35.4 1.0 FE3 B:SF4201 2.7 35.4 1.0 CB B:CYS119 3.3 28.9 1.0 S1 B:SF4201 3.9 35.4 1.0 OG1 B:THR91 4.0 30.5 1.0 N B:CYS119 4.0 28.9 1.0 CA B:CYS119 4.3 28.9 1.0 SG B:CYS149 4.3 29.2 1.0 CQ2 D:2MR85 4.6 30.5 1.0 CE2 B:TYR126 4.8 28.8 1.0 N B:THR91 4.8 30.5 1.0 SG B:CYS55 4.9 31.4 1.0 SG B:CYS54 4.9 31.5 1.0

Iron binding site 2 out of 28 in the Bovine Complex I in the Active State at 3.1 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Bovine Complex I in the Active State at 3.1 A within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:35.4 occ:1.00 FE2 B:SF4201 0.0 35.4 1.0 SG B:CYS149 2.2 29.2 1.0 S1 B:SF4201 2.3 35.4 1.0 S3 B:SF4201 2.3 35.4 1.0 S4 B:SF4201 2.3 35.4 1.0 FE4 B:SF4201 2.7 35.4 1.0 FE1 B:SF4201 2.7 35.4 1.0 FE3 B:SF4201 2.7 35.4 1.0 CB B:CYS149 3.3 29.2 1.0 CA B:CYS149 3.4 29.2 1.0 C B:CYS149 3.6 29.2 1.0 S2 B:SF4201 3.9 35.4 1.0 N B:PRO150 4.0 30.8 1.0 O B:CYS149 4.1 29.2 1.0 NE D:ARG105 4.3 29.9 1.0 CA B:PRO150 4.4 30.8 1.0 CD2 D:HIS190 4.5 31.0 1.0 SG B:CYS55 4.5 31.4 1.0 NE2 D:HIS190 4.6 31.0 1.0 SG B:CYS119 4.7 28.9 1.0 N B:CYS149 4.7 29.2 1.0 O B:GLY148 4.8 28.7 1.0 CD B:PRO150 4.8 30.8 1.0 SG B:CYS54 4.8 31.5 1.0 CB B:CYS54 4.9 31.5 1.0 CD D:ARG105 5.0 29.9 1.0 CB B:PRO150 5.0 30.8 1.0

Iron binding site 3 out of 28 in the Bovine Complex I in the Active State at 3.1 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Bovine Complex I in the Active State at 3.1 A within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:35.4 occ:1.00 FE3 B:SF4201 0.0 35.4 1.0 S4 B:SF4201 2.3 35.4 1.0 SG B:CYS54 2.3 31.5 1.0 S1 B:SF4201 2.3 35.4 1.0 S2 B:SF4201 2.3 35.4 1.0 CB B:CYS54 2.7 31.5 1.0 FE1 B:SF4201 2.7 35.4 1.0 FE2 B:SF4201 2.7 35.4 1.0 FE4 B:SF4201 2.7 35.4 1.0 CQ2 D:2MR85 3.7 30.5 1.0 NE2 D:HIS190 3.9 31.0 1.0 S3 B:SF4201 3.9 35.4 1.0 CA B:CYS54 3.9 31.5 1.0 N B:CYS54 4.1 31.5 1.0 N B:CYS55 4.4 31.4 1.0 CG D:ARG105 4.4 29.9 1.0 CD2 D:HIS190 4.6 31.0 1.0 C B:CYS54 4.6 31.5 1.0 SG B:CYS149 4.7 29.2 1.0 SG B:CYS119 4.8 28.9 1.0 CB D:ARG105 4.8 29.9 1.0 CD D:ARG105 4.8 29.9 1.0 NH2 D:2MR85 4.9 30.5 1.0 CE1 D:HIS190 4.9 31.0 1.0 SG B:CYS55 4.9 31.4 1.0 NE D:ARG105 4.9 29.9 1.0

Iron binding site 4 out of 28 in the Bovine Complex I in the Active State at 3.1 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Bovine Complex I in the Active State at 3.1 A within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:35.4 occ:1.00 FE4 B:SF4201 0.0 35.4 1.0 S3 B:SF4201 2.3 35.4 1.0 S1 B:SF4201 2.3 35.4 1.0 S2 B:SF4201 2.3 35.4 1.0 SG B:CYS55 2.3 31.4 1.0 FE2 B:SF4201 2.7 35.4 1.0 FE1 B:SF4201 2.7 35.4 1.0 FE3 B:SF4201 2.7 35.4 1.0 CB B:CYS55 3.4 31.4 1.0 N B:CYS55 3.6 31.4 1.0 S4 B:SF4201 3.9 35.4 1.0 CA B:CYS55 3.9 31.4 1.0 CB B:CYS54 4.0 31.5 1.0 C B:CYS54 4.5 31.5 1.0 CB B:PRO150 4.6 30.8 1.0 CA B:PRO150 4.6 30.8 1.0 CA B:GLY90 4.6 31.1 1.0 SG B:CYS54 4.6 31.5 1.0 CA B:GLY117 4.7 29.6 1.0 CA B:CYS54 4.7 31.5 1.0 SG B:CYS119 4.8 28.9 1.0 N B:CYS54 4.8 31.5 1.0 SG B:CYS149 4.8 29.2 1.0 N B:PRO150 5.0 30.8 1.0 N B:GLY90 5.0 31.1 1.0

Iron binding site 5 out of 28 in the Bovine Complex I in the Active State at 3.1 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Bovine Complex I in the Active State at 3.1 A within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:54.1 occ:1.00 FE1 E:FES301 0.0 54.1 1.0 S2 E:FES301 2.2 54.1 1.0 S1 E:FES301 2.2 54.1 1.0 SG E:CYS108 2.3 47.7 1.0 SG E:CYS103 2.3 47.4 1.0 FE2 E:FES301 2.7 54.1 1.0 CB E:CYS108 3.3 47.7 1.0 CB E:CYS103 3.3 47.4 1.0 CA E:CYS144 4.0 46.9 1.0 N E:CYS108 4.1 47.7 1.0 CA E:CYS108 4.3 47.7 1.0 N E:LEU145 4.3 47.3 1.0 SG E:CYS144 4.5 46.9 1.0 CB E:CYS144 4.6 46.9 1.0 CA E:CYS103 4.6 47.4 1.0 C E:CYS144 4.7 46.9 1.0 N E:CYS144 4.8 46.9 1.0 SG E:CYS148 4.8 49.7 1.0 SD E:MET153 4.8 50.0 1.0 C E:CYS103 4.8 47.4 1.0 CA E:CYS148 4.8 49.7 1.0 N E:THR105 4.9 45.4 1.0 CG E:MET153 4.9 50.0 1.0 N E:THR104 5.0 45.8 1.0 O E:THR105 5.0 45.4 1.0

Iron binding site 6 out of 28 in the Bovine Complex I in the Active State at 3.1 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Bovine Complex I in the Active State at 3.1 A within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:54.1 occ:1.00 FE2 E:FES301 0.0 54.1 1.0 S2 E:FES301 2.2 54.1 1.0 S1 E:FES301 2.2 54.1 1.0 SG E:CYS144 2.3 46.9 1.0 SG E:CYS148 2.3 49.7 1.0 FE1 E:FES301 2.7 54.1 1.0 CB E:CYS144 3.3 46.9 1.0 CB E:CYS148 3.3 49.7 1.0 CA E:CYS144 3.6 46.9 1.0 CA E:CYS148 3.6 49.7 1.0 N E:CYS148 3.9 49.7 1.0 N E:LEU145 4.0 47.3 1.0 C E:CYS144 4.1 46.9 1.0 N F:GLY103 4.2 48.1 1.0 N E:GLY146 4.3 47.4 1.0 SG E:CYS103 4.4 47.4 1.0 N E:ALA147 4.5 49.7 1.0 C E:ALA147 4.5 49.7 1.0 SG E:CYS108 4.5 47.7 1.0 CB E:PRO107 4.7 47.2 1.0 CG E:PRO107 4.7 47.2 1.0 N E:CYS144 4.8 46.9 1.0 O E:ALA147 4.9 49.7 1.0 CA F:PRO102 4.9 45.1 1.0 CA F:GLY103 4.9 48.1 1.0 CA E:GLY146 5.0 47.4 1.0

Iron binding site 7 out of 28 in the Bovine Complex I in the Active State at 3.1 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Bovine Complex I in the Active State at 3.1 A within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:35.6 occ:1.00 FE1 F:SF4502 0.0 35.6 1.0 S3 F:SF4502 2.3 35.6 1.0 S4 F:SF4502 2.3 35.6 1.0 S2 F:SF4502 2.3 35.6 1.0 SG F:CYS362 2.3 32.5 1.0 FE2 F:SF4502 2.7 35.6 1.0 FE3 F:SF4502 2.7 35.6 1.0 FE4 F:SF4502 2.7 35.6 1.0 CB F:CYS362 3.4 32.5 1.0 N F:CYS362 3.8 32.5 1.0 S1 F:SF4502 3.9 35.6 1.0 CB F:CYS365 3.9 34.8 1.0 CA F:CYS362 4.1 32.5 1.0 O F:CYS362 4.2 32.5 1.0 N F:ILE404 4.2 33.2 1.0 SG F:CYS365 4.5 34.8 1.0 C F:CYS362 4.5 32.5 1.0 CB F:ILE404 4.5 33.2 1.0 CB F:THR403 4.5 34.4 1.0 SG F:CYS359 4.7 34.7 1.0 N F:CYS405 4.7 36.2 1.0 N F:GLN361 4.8 33.1 1.0 CD1 F:ILE404 4.8 33.2 1.0 SG F:CYS405 4.8 36.2 1.0 CB F:GLN361 4.8 33.1 1.0 C F:GLN361 4.9 33.1 1.0 CA F:ILE404 4.9 33.2 1.0 CG1 F:ILE404 4.9 33.2 1.0 CG2 F:THR403 5.0 34.4 1.0

Iron binding site 8 out of 28 in the Bovine Complex I in the Active State at 3.1 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Bovine Complex I in the Active State at 3.1 A within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:35.6 occ:1.00 FE2 F:SF4502 0.0 35.6 1.0 SG F:CYS365 2.2 34.8 1.0 S4 F:SF4502 2.3 35.6 1.0 S1 F:SF4502 2.3 35.6 1.0 S3 F:SF4502 2.3 35.6 1.0 FE1 F:SF4502 2.7 35.6 1.0 FE3 F:SF4502 2.7 35.6 1.0 FE4 F:SF4502 2.7 35.6 1.0 CB F:CYS365 2.8 34.8 1.0 OG F:SER358 3.4 35.9 1.0 S2 F:SF4502 3.9 35.6 1.0 CD2 F:LEU407 4.1 38.4 1.0 CB F:SER358 4.2 35.9 1.0 CA F:CYS365 4.3 34.8 1.0 N F:CYS359 4.4 34.7 1.0 CA F:SER358 4.4 35.9 1.0 CB F:LEU407 4.5 38.4 1.0 SG F:CYS405 4.6 36.2 1.0 SG F:CYS362 4.6 32.5 1.0 N F:GLY408 4.7 38.9 1.0 N F:GLY360 4.8 33.9 1.0 C F:CYS365 4.8 34.8 1.0 CG F:LEU407 4.8 38.4 1.0 SG F:CYS359 4.8 34.7 1.0 C F:SER358 4.9 35.9 1.0 N F:ARG366 4.9 33.3 1.0

Iron binding site 9 out of 28 in the Bovine Complex I in the Active State at 3.1 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Bovine Complex I in the Active State at 3.1 A within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:35.6 occ:1.00 FE3 F:SF4502 0.0 35.6 1.0 SG F:CYS405 2.3 36.2 1.0 S4 F:SF4502 2.3 35.6 1.0 S2 F:SF4502 2.3 35.6 1.0 S1 F:SF4502 2.3 35.6 1.0 FE4 F:SF4502 2.7 35.6 1.0 FE2 F:SF4502 2.7 35.6 1.0 FE1 F:SF4502 2.7 35.6 1.0 CB F:CYS405 3.5 36.2 1.0 N F:CYS405 3.8 36.2 1.0 S3 F:SF4502 3.9 35.6 1.0 CA F:CYS405 4.1 36.2 1.0 CB F:LEU407 4.1 38.4 1.0 CG F:PRO203 4.3 35.7 1.0 CD1 F:ILE185 4.4 38.1 1.0 C F:CYS405 4.6 36.2 1.0 N F:LEU407 4.7 38.4 1.0 SG F:CYS359 4.7 34.7 1.0 SG F:CYS365 4.8 34.8 1.0 SG F:CYS362 4.8 32.5 1.0 N F:GLY408 4.8 38.9 1.0 O F:CYS405 4.9 36.2 1.0 CD F:PRO203 4.9 35.7 1.0 C F:ILE404 5.0 33.2 1.0 CA F:LEU407 5.0 38.4 1.0

Iron binding site 10 out of 28 in the Bovine Complex I in the Active State at 3.1 A


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Bovine Complex I in the Active State at 3.1 A within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:35.6 occ:1.00 FE4 F:SF4502 0.0 35.6 1.0 SG F:CYS359 2.3 34.7 1.0 S3 F:SF4502 2.3 35.6 1.0 S1 F:SF4502 2.3 35.6 1.0 S2 F:SF4502 2.3 35.6 1.0 FE3 F:SF4502 2.7 35.6 1.0 FE2 F:SF4502 2.7 35.6 1.0 FE1 F:SF4502 2.7 35.6 1.0 CB F:CYS359 3.4 34.7 1.0 N F:CYS359 3.7 34.7 1.0 N F:GLN361 3.8 33.1 1.0 N F:GLY360 3.8 33.9 1.0 S4 F:SF4502 3.9 35.6 1.0 CA F:CYS359 3.9 34.7 1.0 CB F:GLN361 4.1 33.1 1.0 C F:CYS359 4.1 34.7 1.0 OG F:SER358 4.5 35.9 1.0 CA F:GLN361 4.5 33.1 1.0 N F:CYS362 4.6 32.5 1.0 CD F:PRO203 4.6 35.7 1.0 C F:GLY360 4.7 33.9 1.0 OE1 F:GLN361 4.7 33.1 1.0 CA F:GLY360 4.8 33.9 1.0 SG F:CYS405 4.8 36.2 1.0 C F:SER358 4.8 35.9 1.0 SG F:CYS365 4.8 34.8 1.0 CG F:PRO203 4.8 35.7 1.0 SG F:CYS362 4.9 32.5 1.0

H.R.Bridges, J.N.Blaza, Z.Yin, I.Chung, J.Hirst. Bovine Complex I in the Active State at 3.1 A To Be Published.