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Iron in PDB 7qu4: Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E

Protein crystallography data

The structure of Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E, PDB code: 7qu4 was solved by K.Kettisen, M.Nyblom, L.Bulow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.95 / 1.66
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 97.45, 189.2, 66.61, 90, 90, 90
R / Rfree (%) 18.2 / 21.9

Iron Binding Sites:

The binding sites of Iron atom in the Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E (pdb code 7qu4). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E, PDB code: 7qu4:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7qu4

Go back to Iron Binding Sites List in 7qu4
Iron binding site 1 out of 4 in the Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe201

b:21.6
occ:1.00
FE G:HEM201 0.0 21.6 1.0
NC G:HEM201 2.0 20.4 1.0
NA G:HEM201 2.0 21.5 1.0
NB G:HEM201 2.1 21.4 1.0
ND G:HEM201 2.1 20.9 1.0
O G:HOH305 2.1 20.8 1.0
NE2 G:HIS92 2.1 20.1 1.0
C4C G:HEM201 3.0 19.8 1.0
C4A G:HEM201 3.0 22.3 1.0
CE1 G:HIS92 3.0 23.4 1.0
C1D G:HEM201 3.1 20.9 1.0
C1B G:HEM201 3.1 22.2 1.0
C4B G:HEM201 3.1 20.0 1.0
C1C G:HEM201 3.1 19.6 1.0
C1A G:HEM201 3.1 22.5 1.0
C4D G:HEM201 3.1 20.1 1.0
CD2 G:HIS92 3.2 23.1 1.0
CHD G:HEM201 3.4 21.8 1.0
CHB G:HEM201 3.4 22.5 1.0
CHC G:HEM201 3.5 18.7 1.0
CHA G:HEM201 3.5 22.5 1.0
NE2 G:HIS63 4.1 25.1 1.0
ND1 G:HIS92 4.2 24.5 1.0
C3C G:HEM201 4.2 20.7 1.0
C3A G:HEM201 4.3 23.9 1.0
C2C G:HEM201 4.3 17.9 1.0
C2D G:HEM201 4.3 25.4 1.0
C2A G:HEM201 4.3 23.5 1.0
C2B G:HEM201 4.3 20.5 1.0
CG G:HIS92 4.3 22.9 1.0
C3B G:HEM201 4.3 22.7 1.0
C3D G:HEM201 4.3 22.1 1.0
CE1 G:HIS63 4.6 25.2 1.0
CG2 G:VAL67 4.7 23.2 1.0

Iron binding site 2 out of 4 in 7qu4

Go back to Iron Binding Sites List in 7qu4
Iron binding site 2 out of 4 in the Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe201

b:23.5
occ:1.00
FE H:HEM201 0.0 23.5 1.0
NC H:HEM201 2.0 24.2 1.0
ND H:HEM201 2.0 22.2 1.0
NB H:HEM201 2.0 22.4 1.0
NA H:HEM201 2.0 24.8 1.0
O H:HOH306 2.1 23.8 1.0
NE2 H:HIS92 2.2 24.4 1.0
C4B H:HEM201 3.0 23.9 1.0
C1C H:HEM201 3.0 23.5 1.0
C1D H:HEM201 3.1 23.2 1.0
C4C H:HEM201 3.1 23.7 1.0
C1A H:HEM201 3.1 26.9 1.0
C4D H:HEM201 3.1 24.0 1.0
C4A H:HEM201 3.1 25.7 1.0
C1B H:HEM201 3.1 24.3 1.0
CE1 H:HIS92 3.2 24.7 1.0
CD2 H:HIS92 3.2 24.7 1.0
CHC H:HEM201 3.4 23.7 1.0
CHA H:HEM201 3.4 24.5 1.0
CHD H:HEM201 3.4 23.2 1.0
CHB H:HEM201 3.5 24.3 1.0
NE2 H:HIS63 4.1 28.1 1.0
C2D H:HEM201 4.3 24.9 1.0
C2C H:HEM201 4.3 21.2 1.0
C3C H:HEM201 4.3 22.1 1.0
C3D H:HEM201 4.3 24.7 1.0
C2A H:HEM201 4.3 28.1 1.0
C3A H:HEM201 4.3 27.1 1.0
C3B H:HEM201 4.3 24.6 1.0
ND1 H:HIS92 4.3 25.2 1.0
C2B H:HEM201 4.3 26.1 1.0
CG H:HIS92 4.4 22.1 1.0
CG2 H:VAL67 4.6 24.2 1.0
CE1 H:HIS63 4.6 29.9 1.0

Iron binding site 3 out of 4 in 7qu4

Go back to Iron Binding Sites List in 7qu4
Iron binding site 3 out of 4 in the Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:21.7
occ:1.00
FE A:HEM201 0.0 21.7 1.0
NB A:HEM201 2.0 21.6 1.0
ND A:HEM201 2.0 22.5 1.0
NC A:HEM201 2.1 20.0 1.0
NA A:HEM201 2.1 19.7 1.0
O A:HOH305 2.1 20.4 1.0
NE2 A:HIS88 2.2 22.6 1.0
C4B A:HEM201 3.0 19.0 1.0
C1C A:HEM201 3.0 23.2 1.0
C4D A:HEM201 3.1 21.9 1.0
C1B A:HEM201 3.1 22.3 1.0
C4C A:HEM201 3.1 21.7 1.0
C1A A:HEM201 3.1 22.4 1.0
C1D A:HEM201 3.1 20.1 1.0
C4A A:HEM201 3.1 23.5 1.0
CE1 A:HIS88 3.2 22.7 1.0
CD2 A:HIS88 3.2 21.2 1.0
CHC A:HEM201 3.4 22.0 1.0
CHA A:HEM201 3.4 23.7 1.0
CHD A:HEM201 3.5 20.4 1.0
CHB A:HEM201 3.5 22.6 1.0
NE2 A:HIS59 4.0 24.8 1.0
C3B A:HEM201 4.2 20.9 1.0
C2C A:HEM201 4.3 20.9 1.0
C2B A:HEM201 4.3 23.5 1.0
C3C A:HEM201 4.3 19.6 1.0
C3A A:HEM201 4.3 21.0 1.0
C3D A:HEM201 4.3 22.6 1.0
C2D A:HEM201 4.3 22.9 1.0
C2A A:HEM201 4.3 24.2 1.0
ND1 A:HIS88 4.3 22.4 1.0
CG A:HIS88 4.4 23.2 1.0
CE1 A:HIS59 4.5 28.2 1.0
CG2 A:VAL63 4.9 22.1 1.0

Iron binding site 4 out of 4 in 7qu4

Go back to Iron Binding Sites List in 7qu4
Iron binding site 4 out of 4 in the Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:26.1
occ:1.00
FE B:HEM201 0.0 26.1 1.0
NC B:HEM201 2.0 24.6 1.0
ND B:HEM201 2.1 25.5 1.0
NA B:HEM201 2.1 25.2 1.0
NB B:HEM201 2.1 24.7 1.0
NE2 B:HIS88 2.2 24.7 1.0
O B:HOH303 2.2 30.1 1.0
C1C B:HEM201 3.0 25.2 1.0
C4C B:HEM201 3.0 23.6 1.0
C4D B:HEM201 3.1 27.1 1.0
C1D B:HEM201 3.1 25.3 1.0
C1A B:HEM201 3.1 28.3 1.0
C4A B:HEM201 3.1 26.3 1.0
C1B B:HEM201 3.1 24.2 1.0
C4B B:HEM201 3.1 24.0 1.0
CE1 B:HIS88 3.1 24.3 1.0
CD2 B:HIS88 3.2 23.1 1.0
CHC B:HEM201 3.4 24.1 1.0
CHA B:HEM201 3.4 27.8 1.0
CHD B:HEM201 3.4 27.5 1.0
CHB B:HEM201 3.5 27.9 1.0
NE2 B:HIS59 4.1 28.9 1.0
C2C B:HEM201 4.2 23.5 1.0
C3C B:HEM201 4.2 25.3 1.0
ND1 B:HIS88 4.2 24.2 1.0
C3D B:HEM201 4.3 26.4 1.0
C2D B:HEM201 4.3 27.0 1.0
CG B:HIS88 4.3 24.7 1.0
C2A B:HEM201 4.3 27.8 1.0
C3A B:HEM201 4.3 31.4 1.0
C3B B:HEM201 4.3 25.7 1.0
C2B B:HEM201 4.3 24.9 1.0
CE1 B:HIS59 4.5 34.9 1.0
CG2 B:VAL63 4.7 29.1 1.0

Reference:

K.Kettisen, M.Nyblom, E.Smeds, A.Fago, L.Bulow. Structural and Oxidative Investigation of A Recombinant High-Yielding Fetal Hemoglobin Mutant To Be Published.
Page generated: Thu Aug 8 20:24:24 2024

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