Iron in PDB 7qu4: Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E
Protein crystallography data
The structure of Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E, PDB code: 7qu4
was solved by
K.Kettisen,
M.Nyblom,
L.Bulow,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
52.95 /
1.66
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
97.45,
189.2,
66.61,
90,
90,
90
|
R / Rfree (%)
|
18.2 /
21.9
|
Iron Binding Sites:
The binding sites of Iron atom in the Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E
(pdb code 7qu4). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E, PDB code: 7qu4:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 7qu4
Go back to
Iron Binding Sites List in 7qu4
Iron binding site 1 out
of 4 in the Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe201
b:21.6
occ:1.00
|
FE
|
G:HEM201
|
0.0
|
21.6
|
1.0
|
NC
|
G:HEM201
|
2.0
|
20.4
|
1.0
|
NA
|
G:HEM201
|
2.0
|
21.5
|
1.0
|
NB
|
G:HEM201
|
2.1
|
21.4
|
1.0
|
ND
|
G:HEM201
|
2.1
|
20.9
|
1.0
|
O
|
G:HOH305
|
2.1
|
20.8
|
1.0
|
NE2
|
G:HIS92
|
2.1
|
20.1
|
1.0
|
C4C
|
G:HEM201
|
3.0
|
19.8
|
1.0
|
C4A
|
G:HEM201
|
3.0
|
22.3
|
1.0
|
CE1
|
G:HIS92
|
3.0
|
23.4
|
1.0
|
C1D
|
G:HEM201
|
3.1
|
20.9
|
1.0
|
C1B
|
G:HEM201
|
3.1
|
22.2
|
1.0
|
C4B
|
G:HEM201
|
3.1
|
20.0
|
1.0
|
C1C
|
G:HEM201
|
3.1
|
19.6
|
1.0
|
C1A
|
G:HEM201
|
3.1
|
22.5
|
1.0
|
C4D
|
G:HEM201
|
3.1
|
20.1
|
1.0
|
CD2
|
G:HIS92
|
3.2
|
23.1
|
1.0
|
CHD
|
G:HEM201
|
3.4
|
21.8
|
1.0
|
CHB
|
G:HEM201
|
3.4
|
22.5
|
1.0
|
CHC
|
G:HEM201
|
3.5
|
18.7
|
1.0
|
CHA
|
G:HEM201
|
3.5
|
22.5
|
1.0
|
NE2
|
G:HIS63
|
4.1
|
25.1
|
1.0
|
ND1
|
G:HIS92
|
4.2
|
24.5
|
1.0
|
C3C
|
G:HEM201
|
4.2
|
20.7
|
1.0
|
C3A
|
G:HEM201
|
4.3
|
23.9
|
1.0
|
C2C
|
G:HEM201
|
4.3
|
17.9
|
1.0
|
C2D
|
G:HEM201
|
4.3
|
25.4
|
1.0
|
C2A
|
G:HEM201
|
4.3
|
23.5
|
1.0
|
C2B
|
G:HEM201
|
4.3
|
20.5
|
1.0
|
CG
|
G:HIS92
|
4.3
|
22.9
|
1.0
|
C3B
|
G:HEM201
|
4.3
|
22.7
|
1.0
|
C3D
|
G:HEM201
|
4.3
|
22.1
|
1.0
|
CE1
|
G:HIS63
|
4.6
|
25.2
|
1.0
|
CG2
|
G:VAL67
|
4.7
|
23.2
|
1.0
|
|
Iron binding site 2 out
of 4 in 7qu4
Go back to
Iron Binding Sites List in 7qu4
Iron binding site 2 out
of 4 in the Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe201
b:23.5
occ:1.00
|
FE
|
H:HEM201
|
0.0
|
23.5
|
1.0
|
NC
|
H:HEM201
|
2.0
|
24.2
|
1.0
|
ND
|
H:HEM201
|
2.0
|
22.2
|
1.0
|
NB
|
H:HEM201
|
2.0
|
22.4
|
1.0
|
NA
|
H:HEM201
|
2.0
|
24.8
|
1.0
|
O
|
H:HOH306
|
2.1
|
23.8
|
1.0
|
NE2
|
H:HIS92
|
2.2
|
24.4
|
1.0
|
C4B
|
H:HEM201
|
3.0
|
23.9
|
1.0
|
C1C
|
H:HEM201
|
3.0
|
23.5
|
1.0
|
C1D
|
H:HEM201
|
3.1
|
23.2
|
1.0
|
C4C
|
H:HEM201
|
3.1
|
23.7
|
1.0
|
C1A
|
H:HEM201
|
3.1
|
26.9
|
1.0
|
C4D
|
H:HEM201
|
3.1
|
24.0
|
1.0
|
C4A
|
H:HEM201
|
3.1
|
25.7
|
1.0
|
C1B
|
H:HEM201
|
3.1
|
24.3
|
1.0
|
CE1
|
H:HIS92
|
3.2
|
24.7
|
1.0
|
CD2
|
H:HIS92
|
3.2
|
24.7
|
1.0
|
CHC
|
H:HEM201
|
3.4
|
23.7
|
1.0
|
CHA
|
H:HEM201
|
3.4
|
24.5
|
1.0
|
CHD
|
H:HEM201
|
3.4
|
23.2
|
1.0
|
CHB
|
H:HEM201
|
3.5
|
24.3
|
1.0
|
NE2
|
H:HIS63
|
4.1
|
28.1
|
1.0
|
C2D
|
H:HEM201
|
4.3
|
24.9
|
1.0
|
C2C
|
H:HEM201
|
4.3
|
21.2
|
1.0
|
C3C
|
H:HEM201
|
4.3
|
22.1
|
1.0
|
C3D
|
H:HEM201
|
4.3
|
24.7
|
1.0
|
C2A
|
H:HEM201
|
4.3
|
28.1
|
1.0
|
C3A
|
H:HEM201
|
4.3
|
27.1
|
1.0
|
C3B
|
H:HEM201
|
4.3
|
24.6
|
1.0
|
ND1
|
H:HIS92
|
4.3
|
25.2
|
1.0
|
C2B
|
H:HEM201
|
4.3
|
26.1
|
1.0
|
CG
|
H:HIS92
|
4.4
|
22.1
|
1.0
|
CG2
|
H:VAL67
|
4.6
|
24.2
|
1.0
|
CE1
|
H:HIS63
|
4.6
|
29.9
|
1.0
|
|
Iron binding site 3 out
of 4 in 7qu4
Go back to
Iron Binding Sites List in 7qu4
Iron binding site 3 out
of 4 in the Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:21.7
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
21.7
|
1.0
|
NB
|
A:HEM201
|
2.0
|
21.6
|
1.0
|
ND
|
A:HEM201
|
2.0
|
22.5
|
1.0
|
NC
|
A:HEM201
|
2.1
|
20.0
|
1.0
|
NA
|
A:HEM201
|
2.1
|
19.7
|
1.0
|
O
|
A:HOH305
|
2.1
|
20.4
|
1.0
|
NE2
|
A:HIS88
|
2.2
|
22.6
|
1.0
|
C4B
|
A:HEM201
|
3.0
|
19.0
|
1.0
|
C1C
|
A:HEM201
|
3.0
|
23.2
|
1.0
|
C4D
|
A:HEM201
|
3.1
|
21.9
|
1.0
|
C1B
|
A:HEM201
|
3.1
|
22.3
|
1.0
|
C4C
|
A:HEM201
|
3.1
|
21.7
|
1.0
|
C1A
|
A:HEM201
|
3.1
|
22.4
|
1.0
|
C1D
|
A:HEM201
|
3.1
|
20.1
|
1.0
|
C4A
|
A:HEM201
|
3.1
|
23.5
|
1.0
|
CE1
|
A:HIS88
|
3.2
|
22.7
|
1.0
|
CD2
|
A:HIS88
|
3.2
|
21.2
|
1.0
|
CHC
|
A:HEM201
|
3.4
|
22.0
|
1.0
|
CHA
|
A:HEM201
|
3.4
|
23.7
|
1.0
|
CHD
|
A:HEM201
|
3.5
|
20.4
|
1.0
|
CHB
|
A:HEM201
|
3.5
|
22.6
|
1.0
|
NE2
|
A:HIS59
|
4.0
|
24.8
|
1.0
|
C3B
|
A:HEM201
|
4.2
|
20.9
|
1.0
|
C2C
|
A:HEM201
|
4.3
|
20.9
|
1.0
|
C2B
|
A:HEM201
|
4.3
|
23.5
|
1.0
|
C3C
|
A:HEM201
|
4.3
|
19.6
|
1.0
|
C3A
|
A:HEM201
|
4.3
|
21.0
|
1.0
|
C3D
|
A:HEM201
|
4.3
|
22.6
|
1.0
|
C2D
|
A:HEM201
|
4.3
|
22.9
|
1.0
|
C2A
|
A:HEM201
|
4.3
|
24.2
|
1.0
|
ND1
|
A:HIS88
|
4.3
|
22.4
|
1.0
|
CG
|
A:HIS88
|
4.4
|
23.2
|
1.0
|
CE1
|
A:HIS59
|
4.5
|
28.2
|
1.0
|
CG2
|
A:VAL63
|
4.9
|
22.1
|
1.0
|
|
Iron binding site 4 out
of 4 in 7qu4
Go back to
Iron Binding Sites List in 7qu4
Iron binding site 4 out
of 4 in the Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Recombinant Human Fetal Hemoglobin Mutant - Alpha Subunit Mutations K11E,K56E,N78D,K90E within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:26.1
occ:1.00
|
FE
|
B:HEM201
|
0.0
|
26.1
|
1.0
|
NC
|
B:HEM201
|
2.0
|
24.6
|
1.0
|
ND
|
B:HEM201
|
2.1
|
25.5
|
1.0
|
NA
|
B:HEM201
|
2.1
|
25.2
|
1.0
|
NB
|
B:HEM201
|
2.1
|
24.7
|
1.0
|
NE2
|
B:HIS88
|
2.2
|
24.7
|
1.0
|
O
|
B:HOH303
|
2.2
|
30.1
|
1.0
|
C1C
|
B:HEM201
|
3.0
|
25.2
|
1.0
|
C4C
|
B:HEM201
|
3.0
|
23.6
|
1.0
|
C4D
|
B:HEM201
|
3.1
|
27.1
|
1.0
|
C1D
|
B:HEM201
|
3.1
|
25.3
|
1.0
|
C1A
|
B:HEM201
|
3.1
|
28.3
|
1.0
|
C4A
|
B:HEM201
|
3.1
|
26.3
|
1.0
|
C1B
|
B:HEM201
|
3.1
|
24.2
|
1.0
|
C4B
|
B:HEM201
|
3.1
|
24.0
|
1.0
|
CE1
|
B:HIS88
|
3.1
|
24.3
|
1.0
|
CD2
|
B:HIS88
|
3.2
|
23.1
|
1.0
|
CHC
|
B:HEM201
|
3.4
|
24.1
|
1.0
|
CHA
|
B:HEM201
|
3.4
|
27.8
|
1.0
|
CHD
|
B:HEM201
|
3.4
|
27.5
|
1.0
|
CHB
|
B:HEM201
|
3.5
|
27.9
|
1.0
|
NE2
|
B:HIS59
|
4.1
|
28.9
|
1.0
|
C2C
|
B:HEM201
|
4.2
|
23.5
|
1.0
|
C3C
|
B:HEM201
|
4.2
|
25.3
|
1.0
|
ND1
|
B:HIS88
|
4.2
|
24.2
|
1.0
|
C3D
|
B:HEM201
|
4.3
|
26.4
|
1.0
|
C2D
|
B:HEM201
|
4.3
|
27.0
|
1.0
|
CG
|
B:HIS88
|
4.3
|
24.7
|
1.0
|
C2A
|
B:HEM201
|
4.3
|
27.8
|
1.0
|
C3A
|
B:HEM201
|
4.3
|
31.4
|
1.0
|
C3B
|
B:HEM201
|
4.3
|
25.7
|
1.0
|
C2B
|
B:HEM201
|
4.3
|
24.9
|
1.0
|
CE1
|
B:HIS59
|
4.5
|
34.9
|
1.0
|
CG2
|
B:VAL63
|
4.7
|
29.1
|
1.0
|
|
Reference:
K.Kettisen,
M.Nyblom,
E.Smeds,
A.Fago,
L.Bulow.
Structural and Oxidative Investigation of A Recombinant High-Yielding Fetal Hemoglobin Mutant To Be Published.
Page generated: Thu Aug 8 20:24:24 2024
|