Iron in PDB 7qv7: Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase.

All present enzymatic activity of Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase.:
1.12.7.2; 1.2.1.2;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 220;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase. (pdb code 7qv7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 220 binding sites of Iron where determined in the Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase., PDB code: 7qv7:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 220 in the Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:78.4 occ:1.00 FE1 A:SF4201 0.0 78.4 1.0 SG A:CYS19 2.3 48.7 1.0 S3 A:SF4201 2.3 78.4 1.0 S2 A:SF4201 2.3 78.4 1.0 S4 A:SF4201 2.3 78.4 1.0 FE4 A:SF4201 2.7 78.4 1.0 FE2 A:SF4201 2.7 78.4 1.0 FE3 A:SF4201 2.7 78.4 1.0 CB A:CYS19 3.2 48.7 1.0 S1 A:SF4201 3.9 78.4 1.0 N A:CYS19 4.1 48.7 1.0 CA A:CYS19 4.2 48.7 1.0 SG A:CYS13 4.6 54.8 1.0 SG A:CYS149 4.7 57.1 1.0 CD1 A:LEU154 4.8 45.7 1.0 SG A:CYS16 4.8 54.2 1.0 N A:TYR17 5.0 52.0 1.0 N A:THR18 5.0 51.1 1.0

Iron binding site 2 out of 220 in the Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:78.4 occ:1.00 FE2 A:SF4201 0.0 78.4 1.0 SG A:CYS149 2.3 57.1 1.0 S1 A:SF4201 2.3 78.4 1.0 S3 A:SF4201 2.3 78.4 1.0 S4 A:SF4201 2.3 78.4 1.0 FE4 A:SF4201 2.7 78.4 1.0 FE1 A:SF4201 2.7 78.4 1.0 FE3 A:SF4201 2.7 78.4 1.0 CB A:CYS149 3.7 57.1 1.0 S2 A:SF4201 3.9 78.4 1.0 CA A:CYS149 4.3 57.1 1.0 CD1 A:LEU154 4.4 45.7 1.0 OG1 A:THR151 4.4 54.9 1.0 CD A:PRO150 4.5 58.2 1.0 CB A:ALA153 4.6 54.7 1.0 SG A:CYS13 4.6 54.8 1.0 SG A:CYS16 4.7 54.2 1.0 SG A:CYS19 4.7 48.7 1.0 CB A:CYS19 4.7 48.7 1.0 O A:ARG12 4.9 60.1 1.0 CA A:CYS13 4.9 54.8 1.0 N A:PRO150 5.0 58.2 1.0 C A:CYS149 5.0 57.1 1.0

Iron binding site 3 out of 220 in the Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:78.4 occ:1.00 FE3 A:SF4201 0.0 78.4 1.0 S4 A:SF4201 2.3 78.4 1.0 SG A:CYS13 2.3 54.8 1.0 S1 A:SF4201 2.3 78.4 1.0 S2 A:SF4201 2.3 78.4 1.0 FE2 A:SF4201 2.7 78.4 1.0 FE4 A:SF4201 2.7 78.4 1.0 FE1 A:SF4201 2.7 78.4 1.0 CB A:CYS13 3.5 54.8 1.0 N A:GLY15 3.6 54.6 1.0 CA A:CYS13 3.6 54.8 1.0 N A:LEU14 3.7 55.0 1.0 S3 A:SF4201 3.9 78.4 1.0 C A:CYS13 3.9 54.8 1.0 CA A:GLY15 4.2 54.6 1.0 N A:CYS16 4.4 54.2 1.0 C A:LEU14 4.6 55.0 1.0 CA A:LEU14 4.7 55.0 1.0 O A:CYS13 4.8 54.8 1.0 C A:GLY15 4.8 54.6 1.0 SG A:CYS16 4.8 54.2 1.0 SG A:CYS19 4.9 48.7 1.0 SG A:CYS149 4.9 57.1 1.0

Iron binding site 4 out of 220 in the Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:78.4 occ:1.00 FE4 A:SF4201 0.0 78.4 1.0 SG A:CYS16 2.3 54.2 1.0 S3 A:SF4201 2.3 78.4 1.0 S1 A:SF4201 2.3 78.4 1.0 S2 A:SF4201 2.3 78.4 1.0 FE2 A:SF4201 2.7 78.4 1.0 FE1 A:SF4201 2.7 78.4 1.0 FE3 A:SF4201 2.7 78.4 1.0 N A:CYS16 3.4 54.2 1.0 CB A:CYS16 3.6 54.2 1.0 S4 A:SF4201 3.9 78.4 1.0 CA A:CYS16 3.9 54.2 1.0 N A:TYR17 4.0 52.0 1.0 C A:CYS16 4.2 54.2 1.0 CD A:PRO150 4.2 58.2 1.0 N A:THR18 4.5 51.1 1.0 N A:GLY15 4.5 54.6 1.0 CG2 A:THR18 4.5 51.1 1.0 SG A:CYS149 4.5 57.1 1.0 C A:GLY15 4.5 54.6 1.0 SG A:CYS19 4.6 48.7 1.0 N A:CYS19 4.8 48.7 1.0 CA A:GLY15 4.8 54.6 1.0 N A:LEU14 4.8 55.0 1.0 CG A:PRO150 4.9 58.2 1.0 SG A:CYS13 5.0 54.8 1.0

Iron binding site 5 out of 220 in the Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:78.4 occ:1.00 FE1 A:SF4202 0.0 78.4 1.0 SG A:CYS52 2.3 56.5 1.0 S4 A:SF4202 2.3 78.4 1.0 S2 A:SF4202 2.3 78.4 1.0 S3 A:SF4202 2.3 78.4 1.0 FE4 A:SF4202 2.7 78.4 1.0 FE2 A:SF4202 2.7 78.4 1.0 FE3 A:SF4202 2.7 78.4 1.0 CB A:CYS52 3.6 56.5 1.0 S1 A:SF4202 3.9 78.4 1.0 O A:ARG53 4.0 78.4 1.0 CA A:CYS52 4.1 56.5 1.0 CD A:LYS132 4.4 31.7 1.0 C A:CYS52 4.4 56.5 1.0 C A:ARG53 4.6 78.4 1.0 SG A:CYS60 4.6 54.0 1.0 N A:CYS55 4.7 58.9 1.0 SG A:CYS55 4.7 58.9 1.0 SG A:CYS93 4.8 40.2 1.0 N A:ARG53 4.8 78.4 1.0 CB A:ALA97 4.8 31.1 1.0 O A:CYS52 4.9 56.5 1.0 CA A:HIS54 4.9 78.4 1.0

Iron binding site 6 out of 220 in the Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:78.4 occ:1.00 FE2 A:SF4202 0.0 78.4 1.0 SG A:CYS60 2.3 54.0 1.0 S3 A:SF4202 2.3 78.4 1.0 S4 A:SF4202 2.3 78.4 1.0 S1 A:SF4202 2.3 78.4 1.0 FE3 A:SF4202 2.7 78.4 1.0 FE1 A:SF4202 2.7 78.4 1.0 FE4 A:SF4202 2.7 78.4 1.0 CB A:CYS60 3.4 54.0 1.0 S2 A:SF4202 3.9 78.4 1.0 N A:CYS60 4.2 54.0 1.0 CA A:CYS60 4.3 54.0 1.0 SG A:CYS93 4.5 40.2 1.0 CD A:PRO59 4.6 78.4 1.0 CB A:CYS93 4.7 40.2 1.0 SG A:CYS52 4.8 56.5 1.0 SG A:CYS55 4.8 58.9 1.0 CB A:CYS55 4.9 58.9 1.0 CD1 A:ILE98 4.9 34.5 1.0

Iron binding site 7 out of 220 in the Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:78.4 occ:1.00 FE3 A:SF4202 0.0 78.4 1.0 SG A:CYS93 2.3 40.2 1.0 S4 A:SF4202 2.3 78.4 1.0 S2 A:SF4202 2.3 78.4 1.0 S1 A:SF4202 2.3 78.4 1.0 FE2 A:SF4202 2.7 78.4 1.0 FE1 A:SF4202 2.7 78.4 1.0 FE4 A:SF4202 2.7 78.4 1.0 CB A:CYS93 3.4 40.2 1.0 S3 A:SF4202 3.9 78.4 1.0 CA A:CYS93 3.9 40.2 1.0 SG A:CYS60 4.2 54.0 1.0 C A:CYS93 4.5 40.2 1.0 CB A:ALA97 4.5 31.1 1.0 N A:SER94 4.6 44.0 1.0 N A:ALA97 4.7 31.1 1.0 N A:PHE95 4.7 78.4 1.0 SG A:CYS55 4.7 58.9 1.0 SG A:CYS52 4.7 56.5 1.0 CB A:PHE95 4.8 78.4 1.0 CD1 A:PHE95 4.8 78.4 1.0 N A:GLY96 4.9 43.6 1.0

Iron binding site 8 out of 220 in the Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:78.4 occ:1.00 FE4 A:SF4202 0.0 78.4 1.0 SG A:CYS55 2.3 58.9 1.0 S1 A:SF4202 2.3 78.4 1.0 S2 A:SF4202 2.3 78.4 1.0 S3 A:SF4202 2.3 78.4 1.0 FE1 A:SF4202 2.7 78.4 1.0 FE2 A:SF4202 2.7 78.4 1.0 FE3 A:SF4202 2.7 78.4 1.0 CB A:CYS55 3.0 58.9 1.0 O A:ARG53 3.7 78.4 1.0 N A:CYS55 3.8 58.9 1.0 S4 A:SF4202 3.9 78.4 1.0 CA A:CYS55 4.0 58.9 1.0 CD A:PRO59 4.3 78.4 1.0 SG A:CYS52 4.8 56.5 1.0 CD1 A:PHE95 4.8 78.4 1.0 C A:ARG53 4.9 78.4 1.0 SG A:CYS93 4.9 40.2 1.0 SG A:CYS60 4.9 54.0 1.0 C A:HIS54 4.9 78.4 1.0

Iron binding site 9 out of 220 in the Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe203 b:78.4 occ:1.00 FE1 A:SF4203 0.0 78.4 1.0 SG A:CYS64 2.3 37.6 1.0 S2 A:SF4203 2.3 78.4 1.0 S3 A:SF4203 2.3 78.4 1.0 S4 A:SF4203 2.3 78.4 1.0 FE4 A:SF4203 2.7 78.4 1.0 FE3 A:SF4203 2.7 78.4 1.0 FE2 A:SF4203 2.7 78.4 1.0 CB A:CYS64 3.5 37.6 1.0 S1 A:SF4203 3.9 78.4 1.0 CA A:CYS64 4.1 37.6 1.0 CB A:ALA68 4.4 28.4 1.0 SG A:CYS86 4.4 49.1 1.0 CD1 A:ILE69 4.5 29.6 1.0 CD A:PRO65 4.6 32.2 1.0 CG1 A:VAL66 4.6 30.9 1.0 CG1 A:ILE69 4.7 29.6 1.0 SG A:CYS89 4.8 36.1 1.0 SG A:CYS83 4.9 48.2 1.0 C A:CYS64 4.9 37.6 1.0

Iron binding site 10 out of 220 in the Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Hydrogen-Dependent CO2 Reductase. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe203 b:78.4 occ:1.00 FE2 A:SF4203 0.0 78.4 1.0 SG A:CYS83 2.3 48.2 1.0 S1 A:SF4203 2.3 78.4 1.0 S3 A:SF4203 2.3 78.4 1.0 S4 A:SF4203 2.3 78.4 1.0 FE3 A:SF4203 2.7 78.4 1.0 FE4 A:SF4203 2.7 78.4 1.0 FE1 A:SF4203 2.7 78.4 1.0 CB A:CYS83 3.2 48.2 1.0 CA A:CYS83 3.7 48.2 1.0 S2 A:SF4203 3.9 78.4 1.0 N A:ILE84 4.0 43.8 1.0 CB A:ALA130 4.3 34.1 1.0 N A:GLY85 4.3 43.1 1.0 C A:CYS83 4.3 48.2 1.0 SG A:CYS86 4.7 49.1 1.0 SG A:CYS89 4.7 36.1 1.0 N A:ALA130 4.8 34.1 1.0 SG A:CYS64 4.9 37.6 1.0 CA A:GLY85 4.9 43.1 1.0 N A:CYS83 4.9 48.2 1.0 N A:CYS86 5.0 49.1 1.0 O A:CYS86 5.0 49.1 1.0

H.M.Dietrich, R.D.Righetto, A.Kumar, W.Wietrzynski, R.Trischler, S.K.Schuller, J.Wagner, F.M.Schwarz, B.D.Engel, V.Muller, J.M.Schuller. Membrane-Anchored Hdcr Nanowires Drive Hydrogen-Powered Co 2 Fixation. Nature V. 607 823 2022.
ISSN: ESSN 1476-4687
PubMed: 35859174
DOI: 10.1038/S41586-022-04971-Z