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Iron in PDB 7qze: Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State
Protein crystallography data
The structure of Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State, PDB code: 7qze
was solved by
M.Lucic,
J.A.R.Worrall,
M.A.Hough,
A.Shilova,
D.A.Axford,
R.L.Owen,
T.Tosha,
H.Sugimoto,
S.Owada,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 36.00 / 1.90 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 86.52, 120.9, 197.41, 90, 90, 90 |
| R / Rfree (%) | 16.6 / 20.1 |
Other elements in 7qze:
The structure of Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State also contains other interesting chemical elements:
| Magnesium | (Mg) | 3 atoms |
Iron Binding Sites:
The binding sites of Iron atom in the Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State
(pdb code 7qze). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State, PDB code: 7qze:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Iron where determined in the Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State, PDB code: 7qze:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
Iron binding site 1 out of 6 in 7qze
Go back to
Iron Binding Sites List in 7qze
Iron binding site 1 out
of 6 in the Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State within 5.0Å range:
|
Iron binding site 2 out of 6 in 7qze
Go back to
Iron Binding Sites List in 7qze
Iron binding site 2 out
of 6 in the Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State within 5.0Å range:
|
Iron binding site 3 out of 6 in 7qze
Go back to
Iron Binding Sites List in 7qze
Iron binding site 3 out
of 6 in the Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State within 5.0Å range:
|
Iron binding site 4 out of 6 in 7qze
Go back to
Iron Binding Sites List in 7qze
Iron binding site 4 out
of 6 in the Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State within 5.0Å range:
|
Iron binding site 5 out of 6 in 7qze
Go back to
Iron Binding Sites List in 7qze
Iron binding site 5 out
of 6 in the Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State within 5.0Å range:
|
Iron binding site 6 out of 6 in 7qze
Go back to
Iron Binding Sites List in 7qze
Iron binding site 6 out
of 6 in the Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Sfx Structure of Dye-Type Peroxidase Dtpb D152A Variant in the Ferryl State within 5.0Å range:
|
Reference:
M.Lucic,
M.T.Wilson,
T.Tosha,
H.Sugimoto,
A.Shilova,
D.Axford,
R.L.Owen,
M.A.Hough,
J.A.R.Worrall.
Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase Dtpb. Acs Catalysis V. 12 13349 2022.
ISSN: ESSN 2155-5435
PubMed: 36366763
DOI: 10.1021/ACSCATAL.2C03754
Page generated: Thu Aug 8 20:44:11 2024
ISSN: ESSN 2155-5435
PubMed: 36366763
DOI: 10.1021/ACSCATAL.2C03754
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