Atomistry » Iron » PDB 7r2s-7rkt » 7r4d
Atomistry »
  Iron »
    PDB 7r2s-7rkt »
      7r4d »

Iron in PDB 7r4d: Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map)

Enzymatic activity of Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map)

All present enzymatic activity of Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map):
1.6.5.3; 1.6.99.3; 7.1.1.2;

Other elements in 7r4d:

The structure of Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map) also contains other interesting chemical elements:

Iodine (I) 1 atom
Potassium (K) 1 atom
Magnesium (Mg) 1 atom
Zinc (Zn) 1 atom
Chlorine (Cl) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map) (pdb code 7r4d). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map), PDB code: 7r4d:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 7r4d

Go back to Iron Binding Sites List in 7r4d
Iron binding site 1 out of 28 in the Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:16.9
occ:1.00
FE1 B:SF4201 0.0 16.9 1.0
SG B:CYS119 2.3 15.4 1.0
S3 B:SF4201 2.3 16.9 1.0
S2 B:SF4201 2.3 16.9 1.0
S4 B:SF4201 2.3 16.9 1.0
FE2 B:SF4201 2.8 16.9 1.0
FE3 B:SF4201 2.8 16.9 1.0
FE4 B:SF4201 2.8 16.9 1.0
CB B:CYS119 3.2 15.4 1.0
O B:HOH355 3.4 14.8 1.0
OG1 B:THR91 3.9 17.4 1.0
S1 B:SF4201 3.9 16.9 1.0
O B:HOH310 4.0 15.0 1.0
N B:CYS119 4.0 15.4 1.0
CA B:CYS119 4.2 15.4 1.0
SG B:CYS149 4.5 14.3 1.0
CQ2 D:2MR85 4.5 17.3 1.0
CE2 B:TYR126 4.6 15.5 1.0
N B:THR91 4.7 17.4 1.0
SG B:CYS55 4.8 16.5 1.0
SG B:CYS54 5.0 16.8 1.0
NH2 D:2MR85 5.0 17.3 1.0

Iron binding site 2 out of 28 in 7r4d

Go back to Iron Binding Sites List in 7r4d
Iron binding site 2 out of 28 in the Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:16.9
occ:1.00
FE2 B:SF4201 0.0 16.9 1.0
SG B:CYS149 2.3 14.3 1.0
S1 B:SF4201 2.3 16.9 1.0
S3 B:SF4201 2.3 16.9 1.0
S4 B:SF4201 2.3 16.9 1.0
FE4 B:SF4201 2.7 16.9 1.0
FE1 B:SF4201 2.8 16.9 1.0
FE3 B:SF4201 2.8 16.9 1.0
CA B:CYS149 3.4 14.3 1.0
CB B:CYS149 3.4 14.3 1.0
O B:HOH355 3.5 14.8 1.0
C B:CYS149 3.6 14.3 1.0
S2 B:SF4201 3.9 16.9 1.0
NE D:ARG105 4.0 15.9 1.0
N B:PRO150 4.0 15.8 1.0
O B:CYS149 4.0 14.3 1.0
CD2 D:HIS190 4.3 16.6 1.0
NE2 D:HIS190 4.4 16.6 1.0
CA B:PRO150 4.5 15.8 1.0
NH2 D:ARG105 4.6 15.9 1.0
SG B:CYS119 4.7 15.4 1.0
SG B:CYS55 4.7 16.5 1.0
N B:CYS149 4.7 14.3 1.0
CZ D:ARG105 4.8 15.9 1.0
CD D:ARG105 4.8 15.9 1.0
SG B:CYS54 4.8 16.8 1.0
CB B:CYS54 4.8 16.8 1.0
O B:GLY148 4.8 14.5 1.0
CD B:PRO150 4.9 15.8 1.0

Iron binding site 3 out of 28 in 7r4d

Go back to Iron Binding Sites List in 7r4d
Iron binding site 3 out of 28 in the Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:16.9
occ:1.00
FE3 B:SF4201 0.0 16.9 1.0
S4 B:SF4201 2.3 16.9 1.0
S1 B:SF4201 2.3 16.9 1.0
S2 B:SF4201 2.3 16.9 1.0
SG B:CYS54 2.3 16.8 1.0
CB B:CYS54 2.6 16.8 1.0
FE2 B:SF4201 2.8 16.9 1.0
FE1 B:SF4201 2.8 16.9 1.0
FE4 B:SF4201 2.8 16.9 1.0
CQ2 D:2MR85 3.6 17.3 1.0
NE2 D:HIS190 3.7 16.6 1.0
CA B:CYS54 3.8 16.8 1.0
N B:CYS54 3.9 16.8 1.0
S3 B:SF4201 3.9 16.9 1.0
N B:CYS55 4.3 16.5 1.0
CG D:ARG105 4.3 15.9 1.0
CD2 D:HIS190 4.4 16.6 1.0
C B:CYS54 4.5 16.8 1.0
NE D:ARG105 4.7 15.9 1.0
CD D:ARG105 4.7 15.9 1.0
SG B:CYS149 4.8 14.3 1.0
CE1 D:HIS190 4.8 16.6 1.0
SG B:CYS119 4.8 15.4 1.0
NH2 D:2MR85 4.8 17.3 1.0
CB D:ARG105 4.9 15.9 1.0
CB B:ALA53 4.9 17.8 1.0
SG B:CYS55 4.9 16.5 1.0

Iron binding site 4 out of 28 in 7r4d

Go back to Iron Binding Sites List in 7r4d
Iron binding site 4 out of 28 in the Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:16.9
occ:1.00
FE4 B:SF4201 0.0 16.9 1.0
S3 B:SF4201 2.3 16.9 1.0
SG B:CYS55 2.3 16.5 1.0
S2 B:SF4201 2.3 16.9 1.0
S1 B:SF4201 2.3 16.9 1.0
FE2 B:SF4201 2.7 16.9 1.0
FE1 B:SF4201 2.8 16.9 1.0
FE3 B:SF4201 2.8 16.9 1.0
CB B:CYS55 3.4 16.5 1.0
N B:CYS55 3.6 16.5 1.0
O B:HOH310 3.7 15.0 1.0
CA B:CYS55 3.9 16.5 1.0
S4 B:SF4201 3.9 16.9 1.0
CB B:CYS54 3.9 16.8 1.0
CB B:PRO150 4.3 15.8 1.0
CA B:PRO150 4.3 15.8 1.0
C B:CYS54 4.5 16.8 1.0
N B:PRO150 4.7 15.8 1.0
CA B:CYS54 4.7 16.8 1.0
SG B:CYS54 4.7 16.8 1.0
N B:CYS54 4.7 16.8 1.0
CA B:CYS149 4.8 14.3 1.0
CA B:GLY117 4.8 15.2 1.0
CA B:GLY90 4.8 17.0 1.0
SG B:CYS149 4.9 14.3 1.0
SG B:CYS119 4.9 15.4 1.0
C B:CYS149 5.0 14.3 1.0

Iron binding site 5 out of 28 in 7r4d

Go back to Iron Binding Sites List in 7r4d
Iron binding site 5 out of 28 in the Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe301

b:28.0
occ:1.00
FE1 E:FES301 0.0 28.0 1.0
S1 E:FES301 2.2 28.0 1.0
S2 E:FES301 2.2 28.0 1.0
SG E:CYS103 2.3 25.7 1.0
SG E:CYS108 2.3 26.2 1.0
FE2 E:FES301 2.7 28.0 1.0
CB E:CYS108 3.3 26.2 1.0
CB E:CYS103 3.3 25.7 1.0
CA E:CYS144 4.1 24.3 1.0
N E:CYS108 4.2 26.2 1.0
N E:LEU145 4.3 25.8 1.0
CA E:CYS108 4.3 26.2 1.0
SD E:MET153 4.4 27.6 1.0
SG E:CYS144 4.5 24.3 1.0
CB E:CYS144 4.6 24.3 1.0
CA E:CYS103 4.6 25.7 1.0
CG E:MET153 4.7 27.6 1.0
C E:CYS144 4.8 24.3 1.0
C E:CYS103 4.8 25.7 1.0
SG E:CYS148 4.8 27.0 1.0
CA E:CYS148 4.8 27.0 1.0
O E:THR105 4.8 24.8 1.0
N E:CYS144 4.9 24.3 1.0
CB E:THR105 4.9 24.8 1.0
N E:THR105 4.9 24.8 1.0
O E:CYS103 5.0 25.7 1.0

Iron binding site 6 out of 28 in 7r4d

Go back to Iron Binding Sites List in 7r4d
Iron binding site 6 out of 28 in the Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe301

b:28.0
occ:1.00
FE2 E:FES301 0.0 28.0 1.0
S2 E:FES301 2.2 28.0 1.0
S1 E:FES301 2.2 28.0 1.0
SG E:CYS144 2.3 24.3 1.0
SG E:CYS148 2.3 27.0 1.0
FE1 E:FES301 2.7 28.0 1.0
CB E:CYS144 3.3 24.3 1.0
CB E:CYS148 3.3 27.0 1.0
CA E:CYS144 3.6 24.3 1.0
CA E:CYS148 3.7 27.0 1.0
N E:CYS148 3.9 27.0 1.0
N E:GLY146 4.0 26.2 1.0
N E:LEU145 4.0 25.8 1.0
C E:CYS144 4.2 24.3 1.0
N E:ALA147 4.2 27.1 1.0
N F:GLY103 4.3 25.9 1.0
SG E:CYS103 4.3 25.7 1.0
C E:ALA147 4.5 27.1 1.0
CA E:GLY146 4.5 26.2 1.0
SG E:CYS108 4.6 26.2 1.0
CG E:PRO107 4.7 25.9 1.0
CB E:PRO107 4.7 25.9 1.0
CA F:PRO102 4.8 24.5 1.0
C E:GLY146 4.9 26.2 1.0
C E:LEU145 4.9 25.8 1.0
N E:CYS144 4.9 24.3 1.0

Iron binding site 7 out of 28 in 7r4d

Go back to Iron Binding Sites List in 7r4d
Iron binding site 7 out of 28 in the Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:19.2
occ:1.00
FE1 F:SF4502 0.0 19.2 1.0
SG F:CYS362 2.3 16.3 1.0
S3 F:SF4502 2.3 19.2 1.0
S4 F:SF4502 2.3 19.2 1.0
S2 F:SF4502 2.3 19.2 1.0
FE2 F:SF4502 2.7 19.2 1.0
FE3 F:SF4502 2.8 19.2 1.0
FE4 F:SF4502 2.8 19.2 1.0
CB F:CYS362 3.4 16.3 1.0
N F:CYS362 3.7 16.3 1.0
S1 F:SF4502 3.9 19.2 1.0
CA F:CYS362 4.1 16.3 1.0
CB F:CYS365 4.1 17.5 1.0
N F:ILE404 4.1 17.2 1.0
CB F:ILE404 4.3 17.2 1.0
O F:CYS362 4.3 16.3 1.0
CB F:THR403 4.4 17.7 1.0
SG F:CYS365 4.5 17.5 1.0
N F:CYS405 4.6 18.4 1.0
C F:CYS362 4.6 16.3 1.0
CB F:GLN361 4.7 17.6 1.0
SG F:CYS359 4.7 18.6 1.0
CA F:ILE404 4.7 17.2 1.0
CG1 F:ILE404 4.8 17.2 1.0
C F:GLN361 4.8 17.6 1.0
N F:GLN361 4.8 17.6 1.0
SG F:CYS405 4.9 18.4 1.0
CD1 F:ILE404 4.9 17.2 1.0
CG2 F:THR403 5.0 17.7 1.0

Iron binding site 8 out of 28 in 7r4d

Go back to Iron Binding Sites List in 7r4d
Iron binding site 8 out of 28 in the Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:19.2
occ:1.00
FE2 F:SF4502 0.0 19.2 1.0
SG F:CYS365 2.3 17.5 1.0
S4 F:SF4502 2.3 19.2 1.0
S1 F:SF4502 2.3 19.2 1.0
S3 F:SF4502 2.3 19.2 1.0
FE1 F:SF4502 2.7 19.2 1.0
FE3 F:SF4502 2.8 19.2 1.0
FE4 F:SF4502 2.8 19.2 1.0
CB F:CYS365 3.0 17.5 1.0
OG F:SER358 3.8 19.7 1.0
S2 F:SF4502 3.9 19.2 1.0
CD2 F:LEU407 4.1 20.8 1.0
N F:CYS359 4.4 18.6 1.0
CB F:SER358 4.4 19.7 1.0
CA F:SER358 4.4 19.7 1.0
CA F:CYS365 4.4 17.5 1.0
CB F:LEU407 4.4 20.8 1.0
SG F:CYS362 4.6 16.3 1.0
N F:GLY408 4.7 20.3 1.0
SG F:CYS405 4.7 18.4 1.0
CG F:LEU407 4.8 20.8 1.0
C F:CYS365 4.8 17.5 1.0
SG F:CYS359 4.9 18.6 1.0
C F:SER358 4.9 19.7 1.0
N F:GLY360 4.9 17.9 1.0
N F:ARG366 5.0 17.2 1.0

Iron binding site 9 out of 28 in 7r4d

Go back to Iron Binding Sites List in 7r4d
Iron binding site 9 out of 28 in the Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:19.2
occ:1.00
FE3 F:SF4502 0.0 19.2 1.0
SG F:CYS405 2.3 18.4 1.0
S4 F:SF4502 2.3 19.2 1.0
S2 F:SF4502 2.3 19.2 1.0
S1 F:SF4502 2.3 19.2 1.0
FE4 F:SF4502 2.7 19.2 1.0
FE1 F:SF4502 2.8 19.2 1.0
FE2 F:SF4502 2.8 19.2 1.0
CB F:CYS405 3.5 18.4 1.0
N F:CYS405 3.8 18.4 1.0
S3 F:SF4502 3.9 19.2 1.0
CA F:CYS405 4.0 18.4 1.0
CG F:PRO203 4.1 19.9 1.0
CB F:LEU407 4.1 20.8 1.0
CD1 F:ILE185 4.3 21.1 1.0
C F:CYS405 4.4 18.4 1.0
O F:CYS405 4.4 18.4 1.0
CD F:PRO203 4.5 19.9 1.0
N F:LEU407 4.7 20.8 1.0
SG F:CYS359 4.7 18.6 1.0
SG F:CYS362 4.8 16.3 1.0
N F:GLY408 4.9 20.3 1.0
SG F:CYS365 4.9 17.5 1.0
C F:ILE404 4.9 17.2 1.0
CA F:LEU407 4.9 20.8 1.0
CB F:PRO203 5.0 19.9 1.0
CB F:ILE404 5.0 17.2 1.0

Iron binding site 10 out of 28 in 7r4d

Go back to Iron Binding Sites List in 7r4d
Iron binding site 10 out of 28 in the Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Bovine Complex I in the Presence of IM1761092, Deactive Class VI (Composite Map) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:19.2
occ:1.00
FE4 F:SF4502 0.0 19.2 1.0
SG F:CYS359 2.3 18.6 1.0
S3 F:SF4502 2.3 19.2 1.0
S1 F:SF4502 2.3 19.2 1.0
S2 F:SF4502 2.3 19.2 1.0
FE3 F:SF4502 2.7 19.2 1.0
FE1 F:SF4502 2.8 19.2 1.0
FE2 F:SF4502 2.8 19.2 1.0
CB F:CYS359 3.3 18.6 1.0
N F:CYS359 3.6 18.6 1.0
N F:GLN361 3.8 17.6 1.0
CA F:CYS359 3.9 18.6 1.0
S4 F:SF4502 3.9 19.2 1.0
N F:GLY360 3.9 17.9 1.0
CB F:GLN361 4.0 17.6 1.0
CD F:PRO203 4.2 19.9 1.0
C F:CYS359 4.2 18.6 1.0
CA F:GLN361 4.5 17.6 1.0
N F:CYS362 4.5 16.3 1.0
NE2 F:GLN361 4.7 17.6 1.0
CG F:PRO203 4.7 19.9 1.0
SG F:CYS405 4.7 18.4 1.0
C F:GLY360 4.7 17.9 1.0
C F:SER358 4.7 19.7 1.0
OG F:SER358 4.8 19.7 1.0
CA F:GLY360 4.8 17.9 1.0
SG F:CYS365 4.8 17.5 1.0
SG F:CYS362 4.9 16.3 1.0
CD1 F:ILE185 5.0 21.1 1.0

Reference:

H.R.Bridges, J.N.Blaza, Z.Yin, I.Chung, M.N.Pollak, J.Hirst. Structural Basis of Mammalian Respiratory Complex I Inhibition By Medicinal Biguanides. Science V. 379 351 2023.
ISSN: ESSN 1095-9203
PubMed: 36701435
DOI: 10.1126/SCIENCE.ADE3332
Page generated: Thu Aug 8 23:04:27 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy