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Iron in PDB 7rcv: High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

Enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

All present enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803:
1.10.3.9;

Other elements in 7rcv:

The structure of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Magnesium (Mg) 70 atoms
Calcium (Ca) 8 atoms
Manganese (Mn) 8 atoms

Iron Binding Sites:

The binding sites of Iron atom in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 (pdb code 7rcv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803, PDB code: 7rcv:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 7rcv

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Iron binding site 1 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:3.3
occ:1.00
 NE2 A:HIS215 2.3 3.6 1.0
O1 A:BCT418 2.4 4.2 1.0
O3 A:BCT418 2.4 4.2 1.0
NE2 D:HIS268 2.4 3.7 1.0
NE2 A:HIS272 2.4 3.5 1.0
NE2 D:HIS214 2.4 10.5 1.0
C A:BCT418 2.8 4.2 1.0
CD2 A:HIS215 3.2 3.6 1.0
CD2 D:HIS214 3.3 10.5 1.0
CD2 D:HIS268 3.3 3.7 1.0
CE1 A:HIS272 3.3 3.5 1.0
CE1 A:HIS215 3.3 3.6 1.0
CE1 D:HIS268 3.4 3.7 1.0
CD2 A:HIS272 3.4 3.5 1.0
CE1 D:HIS214 3.5 10.5 1.0
O2 A:BCT418 4.1 4.2 1.0
CG A:HIS215 4.4 3.6 1.0
ND1 A:HIS215 4.4 3.6 1.0
ND1 A:HIS272 4.5 3.5 1.0
CG D:HIS214 4.5 10.5 1.0
OH D:TYR244 4.5 4.3 1.0
ND1 D:HIS268 4.5 3.7 1.0
CG D:HIS268 4.5 3.7 1.0
ND1 D:HIS214 4.5 10.5 1.0
CG A:HIS272 4.6 3.5 1.0
CG2 A:VAL219 4.7 3.1 1.0
OH A:TYR246 4.7 8.6 1.0
CG2 D:VAL218 4.8 2.6 1.0

Iron binding site 2 out of 6 in 7rcv

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Iron binding site 2 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe102

b:15.5
occ:1.00
 FE F:HEM102 0.0 15.5 1.0
NC F:HEM102 2.0 15.5 1.0
NB F:HEM102 2.1 15.5 1.0
ND F:HEM102 2.1 15.5 1.0
NA F:HEM102 2.1 15.5 1.0
NE2 F:HIS23 2.4 13.7 1.0
CE1 E:HIS23 2.5 15.5 1.0
C4D F:HEM102 3.0 15.5 1.0
C1C F:HEM102 3.0 15.5 1.0
C1A F:HEM102 3.0 15.5 1.0
CD2 F:HIS23 3.0 13.7 1.0
C4B F:HEM102 3.0 15.5 1.0
C1D F:HEM102 3.1 15.5 1.0
C4A F:HEM102 3.1 15.5 1.0
C1B F:HEM102 3.1 15.5 1.0
C4C F:HEM102 3.1 15.5 1.0
NE2 E:HIS23 3.2 15.5 1.0
CE1 F:HIS23 3.3 13.7 1.0
CHA F:HEM102 3.4 15.5 1.0
CHC F:HEM102 3.4 15.5 1.0
CHD F:HEM102 3.4 15.5 1.0
CHB F:HEM102 3.5 15.5 1.0
ND1 E:HIS23 3.5 15.5 1.0
CG F:HIS23 4.1 13.7 1.0
C3D F:HEM102 4.2 15.5 1.0
C2D F:HEM102 4.2 15.5 1.0
C2A F:HEM102 4.2 15.5 1.0
C3A F:HEM102 4.2 15.5 1.0
ND1 F:HIS23 4.2 13.7 1.0
C2C F:HEM102 4.3 15.5 1.0
C3B F:HEM102 4.3 15.5 1.0
C2B F:HEM102 4.3 15.5 1.0
C3C F:HEM102 4.3 15.5 1.0
CD2 E:HIS23 4.5 15.5 1.0
CG E:HIS23 4.6 15.5 1.0
NE1 F:TRP19 4.8 13.8 1.0
CE2 E:TYR19 4.8 15.9 1.0

Iron binding site 3 out of 6 in 7rcv

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Iron binding site 3 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Fe201

b:11.0
occ:1.00
 FE V:HEM201 0.0 11.0 1.0
ND V:HEM201 2.0 11.0 1.0
NB V:HEM201 2.0 11.0 1.0
NC V:HEM201 2.0 11.0 1.0
NA V:HEM201 2.0 11.0 1.0
NE2 V:HIS66 2.1 9.2 1.0
NE2 V:HIS117 2.4 11.1 1.0
CD2 V:HIS117 2.8 11.1 1.0
C4B V:HEM201 3.0 11.0 1.0
C4D V:HEM201 3.0 11.0 1.0
C1D V:HEM201 3.0 11.0 1.0
C1B V:HEM201 3.0 11.0 1.0
C1C V:HEM201 3.0 11.0 1.0
C1A V:HEM201 3.0 11.0 1.0
C4C V:HEM201 3.1 11.0 1.0
C4A V:HEM201 3.1 11.0 1.0
CD2 V:HIS66 3.1 9.2 1.0
CE1 V:HIS66 3.2 9.2 1.0
CHC V:HEM201 3.4 11.0 1.0
CHA V:HEM201 3.4 11.0 1.0
CHD V:HEM201 3.4 11.0 1.0
CHB V:HEM201 3.4 11.0 1.0
CE1 V:HIS117 3.6 11.1 1.0
CG V:HIS117 4.1 11.1 1.0
C3B V:HEM201 4.2 11.0 1.0
C2B V:HEM201 4.2 11.0 1.0
C3D V:HEM201 4.2 11.0 1.0
C2D V:HEM201 4.2 11.0 1.0
ND1 V:HIS66 4.3 9.2 1.0
CG V:HIS66 4.3 9.2 1.0
C2C V:HEM201 4.3 11.0 1.0
C3C V:HEM201 4.3 11.0 1.0
C2A V:HEM201 4.3 11.0 1.0
C3A V:HEM201 4.3 11.0 1.0
ND1 V:HIS117 4.5 11.1 1.0
CE1 V:PHE100 4.9 13.4 1.0

Iron binding site 4 out of 6 in 7rcv

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Iron binding site 4 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe402

b:3.3
occ:1.00
 NE2 a:HIS215 2.3 3.6 1.0
O1 a:BCT418 2.4 4.2 1.0
O3 a:BCT418 2.4 4.2 1.0
NE2 d:HIS268 2.4 3.7 1.0
NE2 a:HIS272 2.4 3.5 1.0
NE2 d:HIS214 2.4 10.5 1.0
C a:BCT418 2.8 4.2 1.0
CD2 a:HIS215 3.2 3.6 1.0
CD2 d:HIS214 3.3 10.5 1.0
CE1 a:HIS272 3.3 3.5 1.0
CD2 d:HIS268 3.3 3.7 1.0
CE1 a:HIS215 3.3 3.6 1.0
CE1 d:HIS268 3.4 3.7 1.0
CD2 a:HIS272 3.4 3.5 1.0
CE1 d:HIS214 3.5 10.5 1.0
O2 a:BCT418 4.1 4.2 1.0
CG a:HIS215 4.4 3.6 1.0
ND1 a:HIS215 4.4 3.6 1.0
ND1 a:HIS272 4.5 3.5 1.0
CG d:HIS214 4.5 10.5 1.0
OH d:TYR244 4.5 4.3 1.0
CG d:HIS268 4.5 3.7 1.0
ND1 d:HIS268 4.5 3.7 1.0
ND1 d:HIS214 4.5 10.5 1.0
CG a:HIS272 4.6 3.5 1.0
CG2 a:VAL219 4.7 3.1 1.0
OH a:TYR246 4.7 8.6 1.0
CG2 d:VAL218 4.8 2.6 1.0

Iron binding site 5 out of 6 in 7rcv

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Iron binding site 5 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Fe102

b:15.5
occ:1.00
 FE f:HEM102 0.0 15.5 1.0
NC f:HEM102 2.0 15.5 1.0
NB f:HEM102 2.1 15.5 1.0
ND f:HEM102 2.1 15.5 1.0
NA f:HEM102 2.1 15.5 1.0
NE2 f:HIS23 2.4 13.7 1.0
CE1 e:HIS23 2.5 15.5 1.0
C4D f:HEM102 3.0 15.5 1.0
C1C f:HEM102 3.0 15.5 1.0
C1A f:HEM102 3.0 15.5 1.0
CD2 f:HIS23 3.0 13.7 1.0
C4B f:HEM102 3.0 15.5 1.0
C1D f:HEM102 3.1 15.5 1.0
C4A f:HEM102 3.1 15.5 1.0
C1B f:HEM102 3.1 15.5 1.0
C4C f:HEM102 3.1 15.5 1.0
NE2 e:HIS23 3.2 15.5 1.0
CE1 f:HIS23 3.3 13.7 1.0
CHA f:HEM102 3.4 15.5 1.0
CHC f:HEM102 3.4 15.5 1.0
CHD f:HEM102 3.4 15.5 1.0
CHB f:HEM102 3.5 15.5 1.0
ND1 e:HIS23 3.5 15.5 1.0
CG f:HIS23 4.1 13.7 1.0
C3D f:HEM102 4.2 15.5 1.0
C2D f:HEM102 4.2 15.5 1.0
C2A f:HEM102 4.2 15.5 1.0
C3A f:HEM102 4.2 15.5 1.0
ND1 f:HIS23 4.2 13.7 1.0
C2C f:HEM102 4.2 15.5 1.0
C3B f:HEM102 4.3 15.5 1.0
C2B f:HEM102 4.3 15.5 1.0
C3C f:HEM102 4.3 15.5 1.0
CD2 e:HIS23 4.5 15.5 1.0
CG e:HIS23 4.6 15.5 1.0
NE1 f:TRP19 4.8 13.8 1.0
CE2 e:TYR19 4.8 15.9 1.0

Iron binding site 6 out of 6 in 7rcv

Go back to Iron Binding Sites List in 7rcv
Iron binding site 6 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
v:Fe201

b:11.0
occ:1.00
 FE v:HEM201 0.0 11.0 1.0
ND v:HEM201 2.0 11.0 1.0
NB v:HEM201 2.0 11.0 1.0
NA v:HEM201 2.0 11.0 1.0
NC v:HEM201 2.0 11.0 1.0
NE2 v:HIS66 2.1 9.2 1.0
NE2 v:HIS117 2.4 11.1 1.0
CD2 v:HIS117 2.8 11.1 1.0
C4B v:HEM201 3.0 11.0 1.0
C4D v:HEM201 3.0 11.0 1.0
C1D v:HEM201 3.0 11.0 1.0
C1B v:HEM201 3.0 11.0 1.0
C1C v:HEM201 3.0 11.0 1.0
C1A v:HEM201 3.0 11.0 1.0
C4C v:HEM201 3.1 11.0 1.0
C4A v:HEM201 3.1 11.0 1.0
CD2 v:HIS66 3.1 9.2 1.0
CE1 v:HIS66 3.2 9.2 1.0
CHC v:HEM201 3.4 11.0 1.0
CHA v:HEM201 3.4 11.0 1.0
CHD v:HEM201 3.4 11.0 1.0
CHB v:HEM201 3.4 11.0 1.0
CE1 v:HIS117 3.6 11.1 1.0
CG v:HIS117 4.1 11.1 1.0
C3B v:HEM201 4.2 11.0 1.0
C2B v:HEM201 4.2 11.0 1.0
C3D v:HEM201 4.2 11.0 1.0
C2D v:HEM201 4.2 11.0 1.0
ND1 v:HIS66 4.3 9.2 1.0
C2C v:HEM201 4.3 11.0 1.0
CG v:HIS66 4.3 9.2 1.0
C3C v:HEM201 4.3 11.0 1.0
C2A v:HEM201 4.3 11.0 1.0
C3A v:HEM201 4.3 11.0 1.0
ND1 v:HIS117 4.5 11.1 1.0
CE1 v:PHE100 4.9 13.4 1.0

Reference:

C.J.Gisriel, J.Wang, J.Liu, D.A.Flesher, K.M.Reiss, H.Huang, K.R.Yang, W.H.Armstrong, M.R.Gunner, V.S.Batista, R.J.Debus, G.W.Brudvig. High-Resolution Cryo-Em Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 To Be Published.
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