Atomistry » Iron » PDB 7r2s-7rkt » 7rcv
Atomistry »
  Iron »
    PDB 7r2s-7rkt »
      7rcv »

Iron in PDB 7rcv: High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

Enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

All present enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803:
1.10.3.9;

Other elements in 7rcv:

The structure of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Magnesium (Mg) 70 atoms
Calcium (Ca) 8 atoms
Manganese (Mn) 8 atoms

Iron Binding Sites:

The binding sites of Iron atom in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 (pdb code 7rcv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803, PDB code: 7rcv:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 7rcv

Go back to Iron Binding Sites List in 7rcv
Iron binding site 1 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:3.3
occ:1.00
NE2 A:HIS215 2.3 3.6 1.0
O1 A:BCT418 2.4 4.2 1.0
O3 A:BCT418 2.4 4.2 1.0
NE2 D:HIS268 2.4 3.7 1.0
NE2 A:HIS272 2.4 3.5 1.0
NE2 D:HIS214 2.4 10.5 1.0
C A:BCT418 2.8 4.2 1.0
CD2 A:HIS215 3.2 3.6 1.0
CD2 D:HIS214 3.3 10.5 1.0
CD2 D:HIS268 3.3 3.7 1.0
CE1 A:HIS272 3.3 3.5 1.0
CE1 A:HIS215 3.3 3.6 1.0
CE1 D:HIS268 3.4 3.7 1.0
CD2 A:HIS272 3.4 3.5 1.0
CE1 D:HIS214 3.5 10.5 1.0
O2 A:BCT418 4.1 4.2 1.0
CG A:HIS215 4.4 3.6 1.0
ND1 A:HIS215 4.4 3.6 1.0
ND1 A:HIS272 4.5 3.5 1.0
CG D:HIS214 4.5 10.5 1.0
OH D:TYR244 4.5 4.3 1.0
ND1 D:HIS268 4.5 3.7 1.0
CG D:HIS268 4.5 3.7 1.0
ND1 D:HIS214 4.5 10.5 1.0
CG A:HIS272 4.6 3.5 1.0
CG2 A:VAL219 4.7 3.1 1.0
OH A:TYR246 4.7 8.6 1.0
CG2 D:VAL218 4.8 2.6 1.0

Iron binding site 2 out of 6 in 7rcv

Go back to Iron Binding Sites List in 7rcv
Iron binding site 2 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe102

b:15.5
occ:1.00
FE F:HEM102 0.0 15.5 1.0
NC F:HEM102 2.0 15.5 1.0
NB F:HEM102 2.1 15.5 1.0
ND F:HEM102 2.1 15.5 1.0
NA F:HEM102 2.1 15.5 1.0
NE2 F:HIS23 2.4 13.7 1.0
CE1 E:HIS23 2.5 15.5 1.0
C4D F:HEM102 3.0 15.5 1.0
C1C F:HEM102 3.0 15.5 1.0
C1A F:HEM102 3.0 15.5 1.0
CD2 F:HIS23 3.0 13.7 1.0
C4B F:HEM102 3.0 15.5 1.0
C1D F:HEM102 3.1 15.5 1.0
C4A F:HEM102 3.1 15.5 1.0
C1B F:HEM102 3.1 15.5 1.0
C4C F:HEM102 3.1 15.5 1.0
NE2 E:HIS23 3.2 15.5 1.0
CE1 F:HIS23 3.3 13.7 1.0
CHA F:HEM102 3.4 15.5 1.0
CHC F:HEM102 3.4 15.5 1.0
CHD F:HEM102 3.4 15.5 1.0
CHB F:HEM102 3.5 15.5 1.0
ND1 E:HIS23 3.5 15.5 1.0
CG F:HIS23 4.1 13.7 1.0
C3D F:HEM102 4.2 15.5 1.0
C2D F:HEM102 4.2 15.5 1.0
C2A F:HEM102 4.2 15.5 1.0
C3A F:HEM102 4.2 15.5 1.0
ND1 F:HIS23 4.2 13.7 1.0
C2C F:HEM102 4.3 15.5 1.0
C3B F:HEM102 4.3 15.5 1.0
C2B F:HEM102 4.3 15.5 1.0
C3C F:HEM102 4.3 15.5 1.0
CD2 E:HIS23 4.5 15.5 1.0
CG E:HIS23 4.6 15.5 1.0
NE1 F:TRP19 4.8 13.8 1.0
CE2 E:TYR19 4.8 15.9 1.0

Iron binding site 3 out of 6 in 7rcv

Go back to Iron Binding Sites List in 7rcv
Iron binding site 3 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Fe201

b:11.0
occ:1.00
FE V:HEM201 0.0 11.0 1.0
ND V:HEM201 2.0 11.0 1.0
NB V:HEM201 2.0 11.0 1.0
NC V:HEM201 2.0 11.0 1.0
NA V:HEM201 2.0 11.0 1.0
NE2 V:HIS66 2.1 9.2 1.0
NE2 V:HIS117 2.4 11.1 1.0
CD2 V:HIS117 2.8 11.1 1.0
C4B V:HEM201 3.0 11.0 1.0
C4D V:HEM201 3.0 11.0 1.0
C1D V:HEM201 3.0 11.0 1.0
C1B V:HEM201 3.0 11.0 1.0
C1C V:HEM201 3.0 11.0 1.0
C1A V:HEM201 3.0 11.0 1.0
C4C V:HEM201 3.1 11.0 1.0
C4A V:HEM201 3.1 11.0 1.0
CD2 V:HIS66 3.1 9.2 1.0
CE1 V:HIS66 3.2 9.2 1.0
CHC V:HEM201 3.4 11.0 1.0
CHA V:HEM201 3.4 11.0 1.0
CHD V:HEM201 3.4 11.0 1.0
CHB V:HEM201 3.4 11.0 1.0
CE1 V:HIS117 3.6 11.1 1.0
CG V:HIS117 4.1 11.1 1.0
C3B V:HEM201 4.2 11.0 1.0
C2B V:HEM201 4.2 11.0 1.0
C3D V:HEM201 4.2 11.0 1.0
C2D V:HEM201 4.2 11.0 1.0
ND1 V:HIS66 4.3 9.2 1.0
CG V:HIS66 4.3 9.2 1.0
C2C V:HEM201 4.3 11.0 1.0
C3C V:HEM201 4.3 11.0 1.0
C2A V:HEM201 4.3 11.0 1.0
C3A V:HEM201 4.3 11.0 1.0
ND1 V:HIS117 4.5 11.1 1.0
CE1 V:PHE100 4.9 13.4 1.0

Iron binding site 4 out of 6 in 7rcv

Go back to Iron Binding Sites List in 7rcv
Iron binding site 4 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe402

b:3.3
occ:1.00
NE2 a:HIS215 2.3 3.6 1.0
O1 a:BCT418 2.4 4.2 1.0
O3 a:BCT418 2.4 4.2 1.0
NE2 d:HIS268 2.4 3.7 1.0
NE2 a:HIS272 2.4 3.5 1.0
NE2 d:HIS214 2.4 10.5 1.0
C a:BCT418 2.8 4.2 1.0
CD2 a:HIS215 3.2 3.6 1.0
CD2 d:HIS214 3.3 10.5 1.0
CE1 a:HIS272 3.3 3.5 1.0
CD2 d:HIS268 3.3 3.7 1.0
CE1 a:HIS215 3.3 3.6 1.0
CE1 d:HIS268 3.4 3.7 1.0
CD2 a:HIS272 3.4 3.5 1.0
CE1 d:HIS214 3.5 10.5 1.0
O2 a:BCT418 4.1 4.2 1.0
CG a:HIS215 4.4 3.6 1.0
ND1 a:HIS215 4.4 3.6 1.0
ND1 a:HIS272 4.5 3.5 1.0
CG d:HIS214 4.5 10.5 1.0
OH d:TYR244 4.5 4.3 1.0
CG d:HIS268 4.5 3.7 1.0
ND1 d:HIS268 4.5 3.7 1.0
ND1 d:HIS214 4.5 10.5 1.0
CG a:HIS272 4.6 3.5 1.0
CG2 a:VAL219 4.7 3.1 1.0
OH a:TYR246 4.7 8.6 1.0
CG2 d:VAL218 4.8 2.6 1.0

Iron binding site 5 out of 6 in 7rcv

Go back to Iron Binding Sites List in 7rcv
Iron binding site 5 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Fe102

b:15.5
occ:1.00
FE f:HEM102 0.0 15.5 1.0
NC f:HEM102 2.0 15.5 1.0
NB f:HEM102 2.1 15.5 1.0
ND f:HEM102 2.1 15.5 1.0
NA f:HEM102 2.1 15.5 1.0
NE2 f:HIS23 2.4 13.7 1.0
CE1 e:HIS23 2.5 15.5 1.0
C4D f:HEM102 3.0 15.5 1.0
C1C f:HEM102 3.0 15.5 1.0
C1A f:HEM102 3.0 15.5 1.0
CD2 f:HIS23 3.0 13.7 1.0
C4B f:HEM102 3.0 15.5 1.0
C1D f:HEM102 3.1 15.5 1.0
C4A f:HEM102 3.1 15.5 1.0
C1B f:HEM102 3.1 15.5 1.0
C4C f:HEM102 3.1 15.5 1.0
NE2 e:HIS23 3.2 15.5 1.0
CE1 f:HIS23 3.3 13.7 1.0
CHA f:HEM102 3.4 15.5 1.0
CHC f:HEM102 3.4 15.5 1.0
CHD f:HEM102 3.4 15.5 1.0
CHB f:HEM102 3.5 15.5 1.0
ND1 e:HIS23 3.5 15.5 1.0
CG f:HIS23 4.1 13.7 1.0
C3D f:HEM102 4.2 15.5 1.0
C2D f:HEM102 4.2 15.5 1.0
C2A f:HEM102 4.2 15.5 1.0
C3A f:HEM102 4.2 15.5 1.0
ND1 f:HIS23 4.2 13.7 1.0
C2C f:HEM102 4.2 15.5 1.0
C3B f:HEM102 4.3 15.5 1.0
C2B f:HEM102 4.3 15.5 1.0
C3C f:HEM102 4.3 15.5 1.0
CD2 e:HIS23 4.5 15.5 1.0
CG e:HIS23 4.6 15.5 1.0
NE1 f:TRP19 4.8 13.8 1.0
CE2 e:TYR19 4.8 15.9 1.0

Iron binding site 6 out of 6 in 7rcv

Go back to Iron Binding Sites List in 7rcv
Iron binding site 6 out of 6 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
v:Fe201

b:11.0
occ:1.00
FE v:HEM201 0.0 11.0 1.0
ND v:HEM201 2.0 11.0 1.0
NB v:HEM201 2.0 11.0 1.0
NA v:HEM201 2.0 11.0 1.0
NC v:HEM201 2.0 11.0 1.0
NE2 v:HIS66 2.1 9.2 1.0
NE2 v:HIS117 2.4 11.1 1.0
CD2 v:HIS117 2.8 11.1 1.0
C4B v:HEM201 3.0 11.0 1.0
C4D v:HEM201 3.0 11.0 1.0
C1D v:HEM201 3.0 11.0 1.0
C1B v:HEM201 3.0 11.0 1.0
C1C v:HEM201 3.0 11.0 1.0
C1A v:HEM201 3.0 11.0 1.0
C4C v:HEM201 3.1 11.0 1.0
C4A v:HEM201 3.1 11.0 1.0
CD2 v:HIS66 3.1 9.2 1.0
CE1 v:HIS66 3.2 9.2 1.0
CHC v:HEM201 3.4 11.0 1.0
CHA v:HEM201 3.4 11.0 1.0
CHD v:HEM201 3.4 11.0 1.0
CHB v:HEM201 3.4 11.0 1.0
CE1 v:HIS117 3.6 11.1 1.0
CG v:HIS117 4.1 11.1 1.0
C3B v:HEM201 4.2 11.0 1.0
C2B v:HEM201 4.2 11.0 1.0
C3D v:HEM201 4.2 11.0 1.0
C2D v:HEM201 4.2 11.0 1.0
ND1 v:HIS66 4.3 9.2 1.0
C2C v:HEM201 4.3 11.0 1.0
CG v:HIS66 4.3 9.2 1.0
C3C v:HEM201 4.3 11.0 1.0
C2A v:HEM201 4.3 11.0 1.0
C3A v:HEM201 4.3 11.0 1.0
ND1 v:HIS117 4.5 11.1 1.0
CE1 v:PHE100 4.9 13.4 1.0

Reference:

C.J.Gisriel, J.Wang, J.Liu, D.A.Flesher, K.M.Reiss, H.Huang, K.R.Yang, W.H.Armstrong, M.R.Gunner, V.S.Batista, R.J.Debus, G.W.Brudvig. High-Resolution Cryo-Em Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 To Be Published.
Page generated: Thu Aug 8 23:40:15 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy