Iron in PDB 7rwv: Crystal Structure of A Metal-Free RIDC1 Variant

The structure of Crystal Structure of A Metal-Free RIDC1 Variant, PDB code: 7rwv was solved by A.Kakkis, E.Golub, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.29 / 2.20
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	92.58, 92.58, 91.26, 90, 90, 90
R / Rfree (%)	19.2 / 25.2

The binding sites of Iron atom in the Crystal Structure of A Metal-Free RIDC1 Variant (pdb code 7rwv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of A Metal-Free RIDC1 Variant, PDB code: 7rwv:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of A Metal-Free RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Metal-Free RIDC1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:18.6 occ:1.00 FE A:HEC201 0.0 18.6 1.0 NB A:HEC201 2.0 17.5 1.0 ND A:HEC201 2.0 18.5 1.0 NA A:HEC201 2.1 20.6 1.0 NC A:HEC201 2.1 19.6 1.0 NE2 A:HIS102 2.2 16.9 1.0 SD A:MET7 2.5 21.9 1.0 C4B A:HEC201 3.0 16.7 1.0 C1B A:HEC201 3.0 18.1 1.0 C4D A:HEC201 3.0 14.6 1.0 C1C A:HEC201 3.1 16.6 1.0 C1D A:HEC201 3.1 18.9 1.0 C1A A:HEC201 3.1 16.6 1.0 C4A A:HEC201 3.1 17.3 1.0 C4C A:HEC201 3.1 22.3 1.0 CD2 A:HIS102 3.1 14.1 1.0 CE1 A:HIS102 3.2 16.9 1.0 CE A:MET7 3.3 18.4 1.0 CHC A:HEC201 3.4 17.9 1.0 CHB A:HEC201 3.4 20.1 1.0 CHA A:HEC201 3.4 12.1 1.0 CG A:MET7 3.4 16.5 1.0 CHD A:HEC201 3.5 18.3 1.0 C3B A:HEC201 4.2 13.5 1.0 CB A:MET7 4.2 17.3 1.0 C2B A:HEC201 4.2 15.0 1.0 C2D A:HEC201 4.2 16.4 1.0 C3D A:HEC201 4.2 19.9 1.0 C2A A:HEC201 4.3 23.9 1.0 C3A A:HEC201 4.3 22.4 1.0 C2C A:HEC201 4.3 18.6 1.0 CG A:HIS102 4.3 20.8 1.0 ND1 A:HIS102 4.3 21.9 1.0 C3C A:HEC201 4.3 17.1 1.0 CA A:MET7 4.9 23.1 1.0

Iron binding site 2 out of 4 in the Crystal Structure of A Metal-Free RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Metal-Free RIDC1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:24.3 occ:1.00 FE B:HEC201 0.0 24.3 1.0 NB B:HEC201 1.9 22.9 1.0 NC B:HEC201 2.1 27.8 1.0 ND B:HEC201 2.1 30.9 1.0 NA B:HEC201 2.1 34.9 1.0 NE2 B:HIS102 2.2 25.1 1.0 SD B:MET7 2.4 27.6 1.0 C4B B:HEC201 2.9 24.1 1.0 C1C B:HEC201 3.0 22.0 1.0 C1B B:HEC201 3.0 28.5 1.0 C4D B:HEC201 3.1 26.6 1.0 C1A B:HEC201 3.1 25.4 1.0 CD2 B:HIS102 3.1 26.6 1.0 C4C B:HEC201 3.1 23.5 1.0 C1D B:HEC201 3.1 26.6 1.0 C4A B:HEC201 3.1 30.5 1.0 CE1 B:HIS102 3.2 23.9 1.0 CHC B:HEC201 3.2 22.9 1.0 CE B:MET7 3.3 30.0 1.0 CHA B:HEC201 3.4 26.0 1.0 CHB B:HEC201 3.5 28.3 1.0 CG B:MET7 3.5 36.4 1.0 CHD B:HEC201 3.5 24.6 1.0 C3B B:HEC201 4.1 22.2 1.0 C2B B:HEC201 4.2 29.0 1.0 CB B:MET7 4.2 25.9 1.0 C2C B:HEC201 4.2 24.7 1.0 C3C B:HEC201 4.3 23.1 1.0 CG B:HIS102 4.3 25.9 1.0 ND1 B:HIS102 4.3 32.0 1.0 C3D B:HEC201 4.3 31.9 1.0 C2D B:HEC201 4.3 32.4 1.0 C2A B:HEC201 4.3 40.3 1.0 C3A B:HEC201 4.4 36.8 1.0 CA B:MET7 4.9 25.5 1.0 NH2 B:ARG106 5.0 36.5 1.0

Iron binding site 3 out of 4 in the Crystal Structure of A Metal-Free RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of A Metal-Free RIDC1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe201 b:22.8 occ:1.00 FE C:HEC201 0.0 22.8 1.0 NB C:HEC201 2.0 24.0 1.0 ND C:HEC201 2.0 22.4 1.0 NA C:HEC201 2.0 26.9 1.0 NC C:HEC201 2.2 27.6 1.0 NE2 C:HIS102 2.2 19.4 1.0 SD C:MET7 2.5 24.0 1.0 C4D C:HEC201 3.0 25.1 1.0 C4B C:HEC201 3.0 22.1 1.0 C1A C:HEC201 3.0 24.6 1.0 C4A C:HEC201 3.1 28.3 1.0 C1B C:HEC201 3.1 29.7 1.0 C1D C:HEC201 3.1 25.2 1.0 C1C C:HEC201 3.1 18.9 1.0 CD2 C:HIS102 3.2 22.3 1.0 C4C C:HEC201 3.2 26.8 1.0 CE1 C:HIS102 3.2 24.3 1.0 CHA C:HEC201 3.4 28.5 1.0 CHC C:HEC201 3.4 22.1 1.0 CE C:MET7 3.4 22.0 1.0 CG C:MET7 3.4 29.9 1.0 CHB C:HEC201 3.5 24.3 1.0 CHD C:HEC201 3.5 21.8 1.0 CB C:MET7 4.2 27.3 1.0 C3D C:HEC201 4.2 27.6 1.0 C3B C:HEC201 4.2 18.5 1.0 C3A C:HEC201 4.3 42.2 1.0 C2A C:HEC201 4.3 36.4 1.0 C2D C:HEC201 4.3 20.8 1.0 C2B C:HEC201 4.3 20.5 1.0 CG C:HIS102 4.3 24.6 1.0 ND1 C:HIS102 4.3 26.4 1.0 C2C C:HEC201 4.4 21.3 1.0 C3C C:HEC201 4.4 21.9 1.0 NH2 C:ARG106 4.9 25.6 1.0 CA C:MET7 5.0 24.3 1.0

Iron binding site 4 out of 4 in the Crystal Structure of A Metal-Free RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of A Metal-Free RIDC1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe201 b:31.0 occ:1.00 FE D:HEC201 0.0 31.0 1.0 ND D:HEC201 2.0 34.1 1.0 NB D:HEC201 2.0 29.2 1.0 NA D:HEC201 2.1 38.8 1.0 NC D:HEC201 2.1 32.9 1.0 NE2 D:HIS102 2.2 25.8 1.0 SD D:MET7 2.5 34.7 1.0 C4D D:HEC201 2.9 32.6 1.0 C4B D:HEC201 2.9 25.4 1.0 C1A D:HEC201 3.0 33.1 1.0 C1C D:HEC201 3.0 27.7 1.0 C1D D:HEC201 3.1 31.2 1.0 CE1 D:HIS102 3.1 27.1 1.0 C1B D:HEC201 3.1 34.3 1.0 C4A D:HEC201 3.2 37.0 1.0 C4C D:HEC201 3.2 32.0 1.0 CG D:MET7 3.2 39.7 1.0 CD2 D:HIS102 3.3 26.7 1.0 CHA D:HEC201 3.3 30.3 1.0 CHC D:HEC201 3.3 31.2 1.0 CE D:MET7 3.4 31.7 1.0 CHD D:HEC201 3.5 31.4 1.0 CHB D:HEC201 3.6 35.0 1.0 CB D:MET7 3.9 37.1 1.0 C3D D:HEC201 4.2 36.4 1.0 C3B D:HEC201 4.2 33.6 1.0 C2D D:HEC201 4.2 23.3 1.0 C2A D:HEC201 4.3 44.3 1.0 ND1 D:HIS102 4.3 21.0 1.0 C2C D:HEC201 4.3 21.2 1.0 C2B D:HEC201 4.3 31.9 1.0 C3A D:HEC201 4.3 41.7 1.0 CG D:HIS102 4.4 26.2 1.0 C3C D:HEC201 4.4 27.1 1.0 CA D:MET7 4.8 41.5 1.0

A.Kakkis, E.Golub. Crystal Structure of A Metal-Free RIDC1 Variant To Be Published.