Iron in PDB 7s3d: Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light

All present enzymatic activity of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light:
1.97.1.12;

The structure of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light also contains other interesting chemical elements:

Calcium	(Ca)	3 atoms
Chlorine	(Cl)	3 atoms
Magnesium	(Mg)	276 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 42;

Binding sites:

The binding sites of Iron atom in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light (pdb code 7s3d). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 42 binding sites of Iron where determined in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light, PDB code: 7s3d:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 42 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe3001 b:21.9 occ:1.00 FE1 A:SF43001 0.0 21.9 1.0 SG B:CYS578 2.2 3.5 1.0 S4 A:SF43001 2.3 21.9 1.0 S2 A:SF43001 2.3 21.9 1.0 S3 A:SF43001 2.3 21.9 1.0 FE2 A:SF43001 2.7 21.9 1.0 FE3 A:SF43001 2.7 21.9 1.0 FE4 A:SF43001 2.7 21.9 1.0 CB B:CYS578 3.5 3.5 1.0 S1 A:SF43001 3.9 21.9 1.0 CA B:CYS578 3.9 3.5 1.0 CZ3 B:TRP677 4.2 5.0 1.0 CD1 A:ILE751 4.2 5.0 1.0 N B:CYS578 4.3 3.5 1.0 CB B:CYS569 4.6 5.0 1.0 SG B:CYS569 4.7 5.0 1.0 CG2 A:ILE751 4.7 5.0 1.0 SG A:CYS605 4.8 5.0 1.0 CE3 B:TRP677 4.8 5.0 1.0 SG A:CYS614 4.9 5.5 1.0 C B:THR577 5.0 5.0 1.0 CG1 A:ILE751 5.0 5.0 1.0

Iron binding site 2 out of 42 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe3001 b:21.9 occ:1.00 FE2 A:SF43001 0.0 21.9 1.0 SG A:CYS614 2.2 5.5 1.0 S3 A:SF43001 2.3 21.9 1.0 S1 A:SF43001 2.3 21.9 1.0 S4 A:SF43001 2.3 21.9 1.0 FE1 A:SF43001 2.7 21.9 1.0 FE4 A:SF43001 2.7 21.9 1.0 FE3 A:SF43001 2.7 21.9 1.0 CB A:CYS614 3.3 5.5 1.0 S2 A:SF43001 3.9 21.9 1.0 CA A:CYS614 3.9 5.5 1.0 CD1 B:ILE711 4.2 5.0 1.0 CE3 B:TRP677 4.2 5.0 1.0 CZ3 B:TRP677 4.4 5.0 1.0 CB A:CYS605 4.5 5.0 1.0 N A:CYS614 4.5 5.5 1.0 SG B:CYS578 4.7 3.5 1.0 SG A:CYS605 4.7 5.0 1.0 SG B:CYS569 4.8 5.0 1.0 CG2 B:ILE711 4.9 5.0 1.0 CG1 B:ILE711 4.9 5.0 1.0

Iron binding site 3 out of 42 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe3001 b:21.9 occ:1.00 FE3 A:SF43001 0.0 21.9 1.0 SG A:CYS605 2.2 5.0 1.0 S2 A:SF43001 2.3 21.9 1.0 S4 A:SF43001 2.3 21.9 1.0 S1 A:SF43001 2.3 21.9 1.0 FE1 A:SF43001 2.7 21.9 1.0 FE4 A:SF43001 2.7 21.9 1.0 FE2 A:SF43001 2.7 21.9 1.0 CB A:CYS605 2.9 5.0 1.0 S3 A:SF43001 3.9 21.9 1.0 CA A:CYS605 4.3 5.0 1.0 N A:GLY607 4.6 5.0 1.0 SG A:CYS614 4.6 5.5 1.0 SG B:CYS569 4.7 5.0 1.0 CD1 A:ILE751 4.7 5.0 1.0 N B:PRO572 4.7 5.0 1.0 SG B:CYS578 4.7 3.5 1.0 CA A:GLY607 4.7 5.0 1.0 CB B:PRO572 4.8 5.0 1.0 CD B:PRO572 4.8 5.0 1.0 C A:GLY607 4.8 5.0 1.0 O A:GLY607 4.8 5.0 1.0 C B:GLY571 4.8 5.0 1.0 N A:CYS605 4.8 5.0 1.0

Iron binding site 4 out of 42 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe3001 b:21.9 occ:1.00 FE4 A:SF43001 0.0 21.9 1.0 SG B:CYS569 2.2 5.0 1.0 S1 A:SF43001 2.3 21.9 1.0 S2 A:SF43001 2.3 21.9 1.0 S3 A:SF43001 2.3 21.9 1.0 FE1 A:SF43001 2.7 21.9 1.0 FE3 A:SF43001 2.7 21.9 1.0 FE2 A:SF43001 2.7 21.9 1.0 CB B:CYS569 3.0 5.0 1.0 S4 A:SF43001 3.9 21.9 1.0 CA B:CYS569 4.4 5.0 1.0 CD1 B:ILE711 4.6 5.0 1.0 N B:GLY571 4.6 5.0 1.0 SG A:CYS614 4.6 5.5 1.0 SG B:CYS578 4.7 3.5 1.0 CA B:GLY571 4.7 5.0 1.0 N A:PRO608 4.7 5.0 1.0 SG A:CYS605 4.7 5.0 1.0 CB A:PRO608 4.7 5.0 1.0 C B:GLY571 4.8 5.0 1.0 O B:GLY571 4.8 5.0 1.0 C A:GLY607 4.8 5.0 1.0 N B:CYS569 4.8 5.0 1.0 CD A:PRO608 4.9 5.0 1.0 CA A:PRO608 4.9 5.0 1.0

Iron binding site 5 out of 42 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3002 b:8.8 occ:1.00 FE1 C:SF43002 0.0 8.8 1.0 SG C:CYS51 2.3 5.0 1.0 S4 C:SF43002 2.3 8.8 1.0 S2 C:SF43002 2.3 8.8 1.0 S3 C:SF43002 2.3 8.8 1.0 FE3 C:SF43002 2.7 8.8 1.0 FE4 C:SF43002 2.7 8.8 1.0 FE2 C:SF43002 2.7 8.8 1.0 N C:CYS51 3.5 5.0 1.0 N C:LYS52 3.6 5.0 1.0 CB C:CYS51 3.7 5.0 1.0 S1 C:SF43002 3.9 8.8 1.0 CD C:PRO22 4.0 5.0 1.0 CA C:CYS51 4.0 5.0 1.0 N C:ARG53 4.2 5.0 1.0 C C:CYS51 4.2 5.0 1.0 N C:GLY50 4.3 5.0 1.0 CG2 C:VAL49 4.3 7.8 1.0 C C:GLY50 4.4 5.0 1.0 CA C:LYS52 4.4 5.0 1.0 CG C:PRO22 4.5 5.0 1.0 CA C:GLY50 4.7 5.0 1.0 SG C:CYS54 4.7 5.0 1.0 SG C:CYS48 4.7 5.0 1.0 SG C:CYS21 4.7 5.0 1.0 C C:LYS52 4.8 5.0 1.0 CB C:ARG53 4.8 5.0 1.0 N C:CYS54 4.9 5.0 1.0

Iron binding site 6 out of 42 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3002 b:8.8 occ:1.00 FE2 C:SF43002 0.0 8.8 1.0 SG C:CYS21 2.2 5.0 1.0 S1 C:SF43002 2.3 8.8 1.0 S3 C:SF43002 2.3 8.8 1.0 S4 C:SF43002 2.3 8.8 1.0 FE4 C:SF43002 2.7 8.8 1.0 FE3 C:SF43002 2.7 8.8 1.0 FE1 C:SF43002 2.7 8.8 1.0 CB C:CYS21 3.3 5.0 1.0 CA C:CYS21 3.8 5.0 1.0 S2 C:SF43002 3.9 8.8 1.0 CD C:PRO22 4.0 5.0 1.0 CB C:VAL25 4.2 20.1 1.0 CG2 C:VAL25 4.3 20.1 1.0 C C:CYS21 4.5 5.0 1.0 N C:PRO22 4.5 5.0 1.0 SG C:CYS51 4.6 5.0 1.0 SG C:CYS54 4.7 5.0 1.0 CD1 C:LEU26 4.7 17.6 1.0 SG C:CYS48 4.8 5.0 1.0 CB C:CYS54 4.9 5.0 1.0 CG C:LEU26 4.9 17.6 1.0 N C:VAL25 4.9 20.1 1.0 N C:CYS21 4.9 5.0 1.0 N C:THR23 5.0 5.0 1.0

Iron binding site 7 out of 42 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3002 b:8.8 occ:1.00 FE3 C:SF43002 0.0 8.8 1.0 SG C:CYS54 2.3 5.0 1.0 S2 C:SF43002 2.3 8.8 1.0 S4 C:SF43002 2.3 8.8 1.0 S1 C:SF43002 2.3 8.8 1.0 FE4 C:SF43002 2.7 8.8 1.0 FE2 C:SF43002 2.7 8.8 1.0 FE1 C:SF43002 2.7 8.8 1.0 CB C:CYS54 3.2 5.0 1.0 N C:CYS54 3.9 5.0 1.0 S3 C:SF43002 3.9 8.8 1.0 CG2 C:VAL67 3.9 5.0 1.0 CA C:CYS54 4.2 5.0 1.0 CA C:LYS52 4.4 5.0 1.0 N C:LYS52 4.4 5.0 1.0 N C:ARG53 4.5 5.0 1.0 SG C:CYS48 4.6 5.0 1.0 SG C:CYS51 4.7 5.0 1.0 CD1 C:LEU26 4.7 17.6 1.0 C C:LYS52 4.7 5.0 1.0 SG C:CYS21 4.8 5.0 1.0

Iron binding site 8 out of 42 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3002 b:8.8 occ:1.00 FE4 C:SF43002 0.0 8.8 1.0 SG C:CYS48 2.2 5.0 1.0 S2 C:SF43002 2.3 8.8 1.0 S1 C:SF43002 2.3 8.8 1.0 S3 C:SF43002 2.3 8.8 1.0 FE3 C:SF43002 2.7 8.8 1.0 FE2 C:SF43002 2.7 8.8 1.0 FE1 C:SF43002 2.7 8.8 1.0 CB C:CYS48 3.5 5.0 1.0 CA C:CYS48 3.8 5.0 1.0 S4 C:SF43002 3.9 8.8 1.0 N C:GLY50 4.0 5.0 1.0 N C:VAL49 4.1 7.8 1.0 C C:CYS48 4.4 5.0 1.0 CG2 C:VAL25 4.4 20.1 1.0 CG2 C:VAL5 4.5 15.3 1.0 CA C:GLY50 4.5 5.0 1.0 CB C:VAL25 4.7 20.1 1.0 SG C:CYS21 4.7 5.0 1.0 CG2 C:VAL67 4.8 5.0 1.0 N C:CYS51 4.8 5.0 1.0 SG C:CYS54 4.8 5.0 1.0 CG1 C:VAL67 4.8 5.0 1.0 SG C:CYS51 4.9 5.0 1.0 CG1 C:VAL25 4.9 20.1 1.0

Iron binding site 9 out of 42 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3003 b:30.7 occ:1.00 FE1 C:SF43003 0.0 30.7 1.0 SG C:CYS58 2.3 20.6 1.0 S2 C:SF43003 2.3 30.7 1.0 S3 C:SF43003 2.3 30.7 1.0 S4 C:SF43003 2.3 30.7 1.0 FE4 C:SF43003 2.7 30.7 1.0 FE3 C:SF43003 2.7 30.7 1.0 FE2 C:SF43003 2.7 30.7 1.0 CB C:CYS58 3.4 20.6 1.0 CA C:CYS58 3.8 20.6 1.0 S1 C:SF43003 3.9 30.7 1.0 CB C:SER64 4.1 18.7 1.0 CD C:PRO59 4.2 24.1 1.0 CG2 C:ILE65 4.2 13.8 1.0 CB C:CYS17 4.6 18.5 1.0 SG C:CYS14 4.6 32.9 1.0 OG C:SER64 4.7 18.7 1.0 C C:CYS58 4.8 20.6 1.0 N C:PRO59 4.8 24.1 1.0 SG C:CYS17 4.8 18.5 1.0 CB C:ILE65 4.8 13.8 1.0 N C:ILE65 4.8 13.8 1.0 N C:SER64 4.8 18.7 1.0 CA C:SER64 4.8 18.7 1.0 SG C:CYS11 4.9 31.0 1.0 N C:CYS58 4.9 20.6 1.0 C C:SER64 4.9 18.7 1.0 OG1 C:THR60 4.9 26.0 1.0

Iron binding site 10 out of 42 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3003 b:30.7 occ:1.00 FE2 C:SF43003 0.0 30.7 1.0 SG C:CYS17 2.3 18.5 1.0 S1 C:SF43003 2.3 30.7 1.0 S4 C:SF43003 2.3 30.7 1.0 S3 C:SF43003 2.3 30.7 1.0 FE3 C:SF43003 2.7 30.7 1.0 FE4 C:SF43003 2.7 30.7 1.0 FE1 C:SF43003 2.7 30.7 1.0 CB C:CYS17 2.9 18.5 1.0 N C:CYS17 3.7 18.5 1.0 S2 C:SF43003 3.9 30.7 1.0 CA C:CYS17 3.9 18.5 1.0 CB C:ALA40 4.1 23.1 1.0 SG C:CYS11 4.7 31.0 1.0 N C:GLN16 4.7 29.6 1.0 SG C:CYS14 4.7 32.9 1.0 N C:VAL18 4.8 19.6 1.0 C C:CYS17 4.8 18.5 1.0 SG C:CYS58 4.9 20.6 1.0 CG2 C:ILE65 4.9 13.8 1.0 C C:GLN16 4.9 29.6 1.0 C C:THR15 5.0 28.1 1.0 N C:THR15 5.0 28.1 1.0

C.J.Gisriel, D.A.Flesher, G.Shen, J.Wang, M.-Y.Ho, G.W.Brudvig, D.A.Bryant. Structure of A Photosystem I-Ferredoxin Complex From A Marine Cyanobacterium Provides Insights Into Far-Red Light Photoacclimation J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X
DOI: 10.1016/J.JBC.2021.101408