Iron in PDB 7s5o: Crystal Structure of Cytochrome C' Beta From Nitrosomonas Europaea Atcc 19718

The structure of Crystal Structure of Cytochrome C' Beta From Nitrosomonas Europaea Atcc 19718, PDB code: 7s5o was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.94 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.79, 88.17, 75.85, 90, 101.62, 90
R / Rfree (%)	15.5 / 19

The binding sites of Iron atom in the Crystal Structure of Cytochrome C' Beta From Nitrosomonas Europaea Atcc 19718 (pdb code 7s5o). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Crystal Structure of Cytochrome C' Beta From Nitrosomonas Europaea Atcc 19718, PDB code: 7s5o:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in the Crystal Structure of Cytochrome C' Beta From Nitrosomonas Europaea Atcc 19718


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome C' Beta From Nitrosomonas Europaea Atcc 19718 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:11.5 occ:1.00 FE A:HEC201 0.0 11.5 1.0 NA A:HEC201 2.1 9.6 1.0 NB A:HEC201 2.1 13.6 1.0 ND A:HEC201 2.1 12.7 1.0 NC A:HEC201 2.1 12.5 1.0 NE2 A:HIS152 2.3 9.3 1.0 C1A A:HEC201 3.1 8.3 1.0 C4A A:HEC201 3.1 9.8 1.0 C1D A:HEC201 3.1 11.4 1.0 C4C A:HEC201 3.1 12.2 1.0 C1B A:HEC201 3.1 10.6 1.0 C4B A:HEC201 3.1 10.4 1.0 C4D A:HEC201 3.1 12.6 1.0 C1C A:HEC201 3.1 11.3 1.0 CE1 A:HIS152 3.2 9.1 1.0 CD2 A:HIS152 3.3 10.7 1.0 CHD A:HEC201 3.4 13.1 1.0 CHB A:HEC201 3.4 8.5 1.0 CHA A:HEC201 3.5 8.5 1.0 CHC A:HEC201 3.5 12.4 1.0 C2A A:HEC201 4.3 9.8 1.0 C3A A:HEC201 4.3 10.4 1.0 ND1 A:HIS152 4.3 10.5 1.0 C3C A:HEC201 4.3 9.9 1.0 C2B A:HEC201 4.3 9.1 1.0 C2D A:HEC201 4.3 11.2 1.0 C3B A:HEC201 4.3 11.3 1.0 C2C A:HEC201 4.3 12.3 1.0 C3D A:HEC201 4.4 10.4 1.0 O A:ACT203 4.4 29.1 1.0 CG A:HIS152 4.4 10.8 1.0 O A:HOH313 4.5 26.5 1.0 CE A:MET79 4.6 14.4 1.0 NH2 A:ARG46 4.7 14.6 1.0 CE1 A:PHE162 4.8 12.6 1.0 CD1 A:PHE162 4.9 12.4 1.0

Iron binding site 2 out of 3 in the Crystal Structure of Cytochrome C' Beta From Nitrosomonas Europaea Atcc 19718


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Cytochrome C' Beta From Nitrosomonas Europaea Atcc 19718 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:11.9 occ:1.00 FE B:HEC201 0.0 11.9 1.0 NB B:HEC201 2.1 12.4 1.0 ND B:HEC201 2.1 12.4 1.0 NA B:HEC201 2.1 11.9 1.0 NC B:HEC201 2.1 12.6 1.0 NE2 B:HIS152 2.2 11.2 1.0 C1D B:HEC201 3.1 11.2 1.0 C4A B:HEC201 3.1 11.0 1.0 C4C B:HEC201 3.1 13.9 1.0 C1B B:HEC201 3.1 12.5 1.0 C1A B:HEC201 3.1 10.3 1.0 C4B B:HEC201 3.1 13.5 1.0 C4D B:HEC201 3.1 12.7 1.0 C1C B:HEC201 3.1 12.4 1.0 CE1 B:HIS152 3.1 11.3 1.0 CD2 B:HIS152 3.3 11.7 1.0 CHD B:HEC201 3.4 12.8 1.0 CHB B:HEC201 3.4 12.3 1.0 CHA B:HEC201 3.5 10.3 1.0 CHC B:HEC201 3.5 15.1 1.0 OXT B:ACT203 4.1 27.8 1.0 C3A B:HEC201 4.3 10.8 1.0 C2A B:HEC201 4.3 11.7 1.0 ND1 B:HIS152 4.3 11.5 1.0 C2D B:HEC201 4.3 12.0 1.0 C3C B:HEC201 4.3 12.9 1.0 C2B B:HEC201 4.3 11.0 1.0 C2C B:HEC201 4.3 16.0 1.0 C3B B:HEC201 4.3 11.8 1.0 C3D B:HEC201 4.3 10.2 1.0 CG B:HIS152 4.4 13.7 1.0 CE B:MET79 4.6 14.5 1.0 NH2 B:ARG46 4.7 14.3 1.0 CE1 B:PHE162 4.9 12.3 1.0 CD1 B:PHE162 4.9 13.5 1.0

Iron binding site 3 out of 3 in the Crystal Structure of Cytochrome C' Beta From Nitrosomonas Europaea Atcc 19718


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Cytochrome C' Beta From Nitrosomonas Europaea Atcc 19718 within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe201 b:16.2 occ:1.00 FE C:HEC201 0.0 16.2 1.0 ND C:HEC201 2.0 15.1 1.0 NB C:HEC201 2.0 16.4 1.0 NA C:HEC201 2.1 11.6 1.0 NC C:HEC201 2.1 17.7 1.0 NE2 C:HIS152 2.3 14.5 1.0 C1D C:HEC201 3.0 17.6 1.0 C4D C:HEC201 3.0 17.2 1.0 C1A C:HEC201 3.1 13.8 1.0 C4B C:HEC201 3.1 16.5 1.0 C1B C:HEC201 3.1 14.4 1.0 CE1 C:HIS152 3.1 15.1 1.0 C4C C:HEC201 3.1 19.7 1.0 C4A C:HEC201 3.1 11.7 1.0 C1C C:HEC201 3.1 18.8 1.0 CD2 C:HIS152 3.4 18.4 1.0 CHA C:HEC201 3.4 15.1 1.0 CHD C:HEC201 3.4 16.5 1.0 CHC C:HEC201 3.5 17.5 1.0 CHB C:HEC201 3.5 13.3 1.0 OXT C:ACT203 4.1 35.8 1.0 CH3 C:ACT203 4.2 25.4 1.0 C2A C:HEC201 4.3 12.8 1.0 ND1 C:HIS152 4.3 14.8 1.0 C2D C:HEC201 4.3 18.7 1.0 C3D C:HEC201 4.3 15.1 1.0 C3A C:HEC201 4.3 12.0 1.0 C2B C:HEC201 4.3 13.5 1.0 C3B C:HEC201 4.3 15.8 1.0 C3C C:HEC201 4.3 16.9 1.0 C2C C:HEC201 4.3 20.3 1.0 CG C:HIS152 4.5 18.6 1.0 CE C:MET79 4.5 17.6 1.0 NH2 C:ARG46 4.7 21.1 1.0 CE1 C:PHE162 4.7 17.5 1.0 C C:ACT203 4.7 29.9 1.0 CD1 C:PHE162 4.9 17.8 1.0

J.Abendroth, G.W.Buchko, F.N.Liew, J.N.Nguyen, H.J.Kim. Structural Characterization of Cytochrome C ' Beta-Met From An Ammonia-Oxidizing Bacterium. Biochemistry V. 61 563 2022.
ISSN: ISSN 0006-2960
PubMed: 35315646
DOI: 10.1021/ACS.BIOCHEM.1C00640