Iron in PDB 7stw: Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus

The structure of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus also contains other interesting chemical elements:

Zinc

(Zn)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus (pdb code 7stw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus, PDB code: 7stw:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:23.3 occ:1.00 OE1 A:GLU148 2.7 7.7 1.0 O A:HOH322 2.8 6.8 1.0 OE2 A:GLU116 2.9 9.4 1.0 OD1 A:ASP63 2.9 7.4 1.0 OE1 A:GLU116 3.0 9.4 1.0 OD2 A:ASP63 3.1 7.4 1.0 CD A:GLU116 3.3 9.4 1.0 CG A:ASP63 3.4 7.4 1.0 CD A:GLU148 3.4 7.7 1.0 OE2 A:GLU148 3.5 7.7 1.0 ZN A:ZN201 4.0 15.2 1.0 ND1 A:HIS151 4.2 10.5 1.0 CG A:HIS151 4.3 10.5 1.0 CB A:HIS151 4.5 10.5 1.0 CE1 A:HIS151 4.6 10.5 1.0 CD2 A:HIS151 4.7 10.5 1.0 CG A:GLU116 4.8 9.4 1.0 CG A:GLU148 4.9 7.7 1.0 NE2 A:HIS151 4.9 10.5 1.0 CB A:ASP63 4.9 7.4 1.0 OH A:TYR37 5.0 5.9 1.0 O A:ALA59 5.0 9.0 1.0

Iron binding site 2 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe202 b:22.1 occ:1.00 OE2 B:GLU116 2.7 9.3 1.0 OE1 B:GLU148 2.8 7.5 1.0 OE1 B:GLU116 2.9 9.3 1.0 OD1 B:ASP63 3.1 7.3 1.0 O B:HOH315 3.1 7.8 1.0 CD B:GLU116 3.2 9.3 1.0 OD2 B:ASP63 3.2 7.3 1.0 CG B:ASP63 3.5 7.3 1.0 CD B:GLU148 3.6 7.5 1.0 OE2 B:GLU148 3.6 7.5 1.0 ZN B:ZN201 4.0 15.8 1.0 CG B:HIS151 4.1 10.3 1.0 ND1 B:HIS151 4.1 10.3 1.0 CB B:HIS151 4.4 10.3 1.0 CE1 B:HIS151 4.6 10.3 1.0 CD2 B:HIS151 4.6 10.3 1.0 CG B:GLU116 4.7 9.3 1.0 NE2 B:HIS151 4.8 10.3 1.0 OH B:TYR37 4.8 5.6 1.0 O B:ALA59 4.9 8.7 1.0

Iron binding site 3 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe202 b:23.0 occ:1.00 OE1 C:GLU148 2.5 7.5 1.0 OE1 C:GLU116 2.7 9.3 1.0 O C:HOH321 2.8 7.7 1.0 OE2 C:GLU116 2.8 9.3 1.0 CD C:GLU116 3.1 9.3 1.0 OD1 C:ASP63 3.2 7.1 1.0 CD C:GLU148 3.3 7.5 1.0 OE2 C:GLU148 3.4 7.5 1.0 OD2 C:ASP63 3.5 7.1 1.0 O C:HOH315 3.5 8.6 1.0 CG C:ASP63 3.7 7.1 1.0 ZN C:ZN201 4.0 13.1 1.0 ND1 C:HIS151 4.1 10.4 1.0 CG C:HIS151 4.1 10.4 1.0 CB C:HIS151 4.3 10.4 1.0 CE1 C:HIS151 4.6 10.4 1.0 CG C:GLU116 4.6 9.3 1.0 CG C:GLU148 4.7 7.5 1.0 CD2 C:HIS151 4.7 10.4 1.0 CA C:GLU148 4.8 7.5 1.0 NE2 C:HIS151 4.9 10.4 1.0 CB C:ALA119 5.0 6.6 1.0

Iron binding site 4 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe202 b:25.8 occ:1.00 OE1 D:GLU148 2.7 7.5 1.0 OE2 D:GLU116 2.7 9.4 1.0 OE1 D:GLU116 2.8 9.4 1.0 O D:HOH323 3.0 9.0 1.0 CD D:GLU116 3.1 9.4 1.0 OD1 D:ASP63 3.2 7.5 1.0 OD2 D:ASP63 3.3 7.5 1.0 CD D:GLU148 3.5 7.5 1.0 OE2 D:GLU148 3.5 7.5 1.0 CG D:ASP63 3.6 7.5 1.0 ZN D:ZN201 4.0 17.3 1.0 ND1 D:HIS151 4.3 10.2 1.0 CG D:HIS151 4.3 10.2 1.0 CB D:HIS151 4.5 10.2 1.0 CG D:GLU116 4.6 9.4 1.0 CE1 D:HIS151 4.8 10.2 1.0 OH D:TYR37 4.8 6.1 1.0 CD2 D:HIS151 4.8 10.2 1.0 CG D:GLU148 4.9 7.5 1.0 CB D:ALA119 4.9 6.9 1.0

Iron binding site 5 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe202 b:23.5 occ:1.00 OE1 E:GLU148 2.7 8.3 1.0 OD1 E:ASP63 2.8 8.1 1.0 O E:HOH318 3.0 7.5 1.0 OE2 E:GLU116 3.0 9.6 1.0 OE1 E:GLU116 3.1 9.6 1.0 OD2 E:ASP63 3.1 8.1 1.0 OE2 E:GLU148 3.4 8.3 1.0 CD E:GLU148 3.4 8.3 1.0 CG E:ASP63 3.4 8.1 1.0 CD E:GLU116 3.4 9.6 1.0 ZN E:ZN201 4.0 17.4 1.0 ND1 E:HIS151 4.2 11.0 1.0 CG E:HIS151 4.3 11.0 1.0 CE1 E:HIS151 4.6 11.0 1.0 CB E:HIS151 4.6 11.0 1.0 CD2 E:HIS151 4.7 11.0 1.0 CG E:GLU148 4.8 8.3 1.0 NE2 E:HIS151 4.9 11.0 1.0 CB E:ASP63 4.9 8.1 1.0 CG E:GLU116 4.9 9.6 1.0 O E:ALA59 5.0 9.7 1.0

Iron binding site 6 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe202 b:22.5 occ:1.00 OE2 F:GLU116 2.7 8.6 1.0 O F:HOH317 2.8 7.8 1.0 OE1 F:GLU148 2.8 7.2 1.0 OE1 F:GLU116 2.9 8.6 1.0 OD1 F:ASP63 3.1 7.5 1.0 CD F:GLU116 3.1 8.6 1.0 OD2 F:ASP63 3.2 7.5 1.0 CD F:GLU148 3.5 7.2 1.0 CG F:ASP63 3.6 7.5 1.0 OE2 F:GLU148 3.6 7.2 1.0 ZN F:ZN201 4.0 16.8 1.0 ND1 F:HIS151 4.1 10.1 1.0 CG F:HIS151 4.1 10.1 1.0 CB F:HIS151 4.4 10.1 1.0 CE1 F:HIS151 4.6 10.1 1.0 CD2 F:HIS151 4.6 10.1 1.0 CG F:GLU116 4.7 8.6 1.0 NE2 F:HIS151 4.8 10.1 1.0 OH F:TYR37 4.9 5.5 1.0 CG F:GLU148 4.9 7.2 1.0

Iron binding site 7 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe202 b:25.2 occ:1.00 OE1 G:GLU148 2.4 8.0 1.0 OE1 G:GLU116 2.7 9.9 1.0 OE2 G:GLU116 2.9 9.9 1.0 O G:HOH321 3.0 8.2 1.0 OD1 G:ASP63 3.2 7.1 1.0 CD G:GLU116 3.2 9.9 1.0 CD G:GLU148 3.2 8.0 1.0 OE2 G:GLU148 3.3 8.0 1.0 OD2 G:ASP63 3.5 7.1 1.0 CG G:ASP63 3.7 7.1 1.0 ZN G:ZN201 4.0 15.5 1.0 ND1 G:HIS151 4.1 10.3 1.0 CG G:HIS151 4.2 10.3 1.0 CB G:HIS151 4.4 10.3 1.0 CG G:GLU148 4.6 8.0 1.0 CE1 G:HIS151 4.6 10.3 1.0 CG G:GLU116 4.7 9.9 1.0 CD2 G:HIS151 4.8 10.3 1.0 CA G:GLU148 4.8 8.0 1.0 CB G:ALA119 4.9 7.4 1.0 CB G:GLU148 5.0 8.0 1.0 NE2 G:HIS151 5.0 10.3 1.0

Iron binding site 8 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe202 b:27.9 occ:1.00 OE1 H:GLU148 2.6 8.3 1.0 OE2 H:GLU116 2.7 10.2 1.0 OE1 H:GLU116 2.8 10.2 1.0 O H:HOH319 3.0 8.3 1.0 CD H:GLU116 3.1 10.2 1.0 OD1 H:ASP63 3.2 7.6 1.0 OD2 H:ASP63 3.3 7.6 1.0 O H:HOH321 3.3 10.7 1.0 CD H:GLU148 3.4 8.3 1.0 OE2 H:GLU148 3.5 8.3 1.0 CG H:ASP63 3.6 7.6 1.0 ZN H:ZN201 4.0 16.4 1.0 ND1 H:HIS151 4.3 11.7 1.0 CG H:HIS151 4.4 11.7 1.0 CB H:HIS151 4.5 11.7 1.0 CG H:GLU116 4.6 10.2 1.0 CE1 H:HIS151 4.8 11.7 1.0 OH H:TYR37 4.8 6.2 1.0 CG H:GLU148 4.9 8.3 1.0 CD2 H:HIS151 4.9 11.7 1.0 CB H:ALA119 4.9 7.7 1.0

Iron binding site 9 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe202 b:22.8 occ:1.00 OE1 I:GLU148 2.7 8.4 1.0 OE2 I:GLU116 2.8 10.2 1.0 O I:HOH314 2.8 8.1 1.0 OE1 I:GLU116 3.0 10.2 1.0 OD1 I:ASP63 3.0 8.2 1.0 OD2 I:ASP63 3.2 8.2 1.0 CD I:GLU116 3.3 10.2 1.0 CD I:GLU148 3.5 8.4 1.0 CG I:ASP63 3.5 8.2 1.0 OE2 I:GLU148 3.5 8.4 1.0 ZN I:ZN201 4.0 16.3 1.0 ND1 I:HIS151 4.2 11.3 1.0 CG I:HIS151 4.2 11.3 1.0 CB I:HIS151 4.5 11.3 1.0 CE1 I:HIS151 4.6 11.3 1.0 CD2 I:HIS151 4.7 11.3 1.0 CG I:GLU116 4.8 10.2 1.0 CG I:GLU148 4.9 8.4 1.0 NE2 I:HIS151 4.9 11.3 1.0 OH I:TYR37 4.9 6.0 1.0 CB I:ASP63 5.0 8.2 1.0

Iron binding site 10 out of 12 in the Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ J:Fe202 b:24.8 occ:1.00 OE2 J:GLU116 2.6 8.8 1.0 OE1 J:GLU116 2.8 8.8 1.0 OE1 J:GLU148 2.8 7.2 1.0 O J:HOH320 2.9 8.0 1.0 CD J:GLU116 3.0 8.8 1.0 OD1 J:ASP63 3.2 7.4 1.0 OD2 J:ASP63 3.3 7.4 1.0 CD J:GLU148 3.6 7.2 1.0 CG J:ASP63 3.7 7.4 1.0 OE2 J:GLU148 3.7 7.2 1.0 O J:HOH321 3.7 8.4 1.0 CG J:HIS151 4.0 10.4 1.0 ND1 J:HIS151 4.0 10.4 1.0 ZN J:ZN201 4.0 16.5 1.0 CB J:HIS151 4.2 10.4 1.0 CD2 J:HIS151 4.4 10.4 1.0 CE1 J:HIS151 4.4 10.4 1.0 CG J:GLU116 4.6 8.8 1.0 NE2 J:HIS151 4.7 10.4 1.0 OH J:TYR37 4.9 5.5 1.0 O J:ALA59 5.0 8.6 1.0 CG J:GLU148 5.0 7.2 1.0

B.Ramsay, B.Wiedenheft, M.Allen, G.H.Gauss, C.M.Lawrence, M.Young, T.Douglas. Structure of Dpsl (Dna Protection in Starved Cells - Like) From Pyrococcus Furiosus To Be Published.