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Iron in PDB 7su2: Crystal Structure of A Co-Bound RIDC1 Variant

Protein crystallography data

The structure of Crystal Structure of A Co-Bound RIDC1 Variant, PDB code: 7su2 was solved by E.Golub, A.Kakkis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.00 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.875, 90.024, 52.042, 90, 95.91, 90
R / Rfree (%) 18.4 / 23.2

Other elements in 7su2:

The structure of Crystal Structure of A Co-Bound RIDC1 Variant also contains other interesting chemical elements:

Cobalt (Co) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of A Co-Bound RIDC1 Variant (pdb code 7su2). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of A Co-Bound RIDC1 Variant, PDB code: 7su2:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7su2

Go back to Iron Binding Sites List in 7su2
Iron binding site 1 out of 4 in the Crystal Structure of A Co-Bound RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Co-Bound RIDC1 Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:23.9
occ:1.00
FE D:HEC201 0.0 23.9 1.0
ND D:HEC201 2.0 21.1 1.0
NA D:HEC201 2.0 24.4 1.0
NB D:HEC201 2.0 19.6 1.0
NE2 D:HIS102 2.1 18.6 1.0
NC D:HEC201 2.1 21.2 1.0
SD D:MET7 2.4 24.2 1.0
C4D D:HEC201 3.0 22.5 1.0
C1A D:HEC201 3.0 24.6 1.0
CD2 D:HIS102 3.0 22.5 1.0
C4B D:HEC201 3.0 18.0 1.0
C1D D:HEC201 3.1 21.5 1.0
C1C D:HEC201 3.1 23.2 1.0
C4A D:HEC201 3.1 22.6 1.0
CE1 D:HIS102 3.1 23.7 1.0
C1B D:HEC201 3.1 18.7 1.0
C4C D:HEC201 3.2 22.8 1.0
CHA D:HEC201 3.3 26.9 1.0
CE D:MET7 3.4 22.9 1.0
CHC D:HEC201 3.4 21.0 1.0
CG D:MET7 3.5 23.4 1.0
CHB D:HEC201 3.5 24.4 1.0
CHD D:HEC201 3.5 20.3 1.0
CG D:HIS102 4.2 24.4 1.0
CB D:MET7 4.2 25.0 1.0
ND1 D:HIS102 4.2 20.4 1.0
C3D D:HEC201 4.2 24.9 1.0
C2A D:HEC201 4.2 23.8 1.0
C2D D:HEC201 4.3 25.3 1.0
C3B D:HEC201 4.3 17.6 1.0
C3A D:HEC201 4.3 19.6 1.0
C2B D:HEC201 4.3 23.7 1.0
C2C D:HEC201 4.3 21.8 1.0
C3C D:HEC201 4.4 19.6 1.0

Iron binding site 2 out of 4 in 7su2

Go back to Iron Binding Sites List in 7su2
Iron binding site 2 out of 4 in the Crystal Structure of A Co-Bound RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Co-Bound RIDC1 Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:24.3
occ:1.00
FE A:HEC201 0.0 24.3 1.0
ND A:HEC201 1.9 18.8 1.0
NB A:HEC201 1.9 18.2 1.0
NA A:HEC201 2.1 28.8 1.0
NC A:HEC201 2.1 22.1 1.0
NE2 A:HIS102 2.1 23.2 1.0
SD A:MET7 2.4 25.2 1.0
C4B A:HEC201 2.9 20.9 1.0
C4D A:HEC201 3.0 27.8 1.0
C1B A:HEC201 3.0 27.8 1.0
C1D A:HEC201 3.0 29.0 1.0
CE1 A:HIS102 3.0 28.8 1.0
C1C A:HEC201 3.1 16.7 1.0
C1A A:HEC201 3.1 23.6 1.0
C4A A:HEC201 3.1 27.2 1.0
CD2 A:HIS102 3.1 20.1 1.0
C4C A:HEC201 3.1 21.0 1.0
CE A:MET7 3.3 27.2 1.0
CHC A:HEC201 3.3 24.4 1.0
CG A:MET7 3.4 23.1 1.0
CHA A:HEC201 3.4 28.7 1.0
CHB A:HEC201 3.5 26.1 1.0
CHD A:HEC201 3.5 22.9 1.0
C3B A:HEC201 4.2 20.5 1.0
C3D A:HEC201 4.2 24.4 1.0
C2B A:HEC201 4.2 22.5 1.0
ND1 A:HIS102 4.2 23.4 1.0
CB A:MET7 4.2 21.8 1.0
C2D A:HEC201 4.2 25.3 1.0
CG A:HIS102 4.3 26.0 1.0
C2C A:HEC201 4.3 21.9 1.0
C2A A:HEC201 4.3 29.1 1.0
C3A A:HEC201 4.3 26.9 1.0
C3C A:HEC201 4.4 20.7 1.0
CA A:MET7 4.9 25.2 1.0

Iron binding site 3 out of 4 in 7su2

Go back to Iron Binding Sites List in 7su2
Iron binding site 3 out of 4 in the Crystal Structure of A Co-Bound RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of A Co-Bound RIDC1 Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:28.7
occ:1.00
FE C:HEC201 0.0 28.7 1.0
ND C:HEC201 1.9 32.9 1.0
NB C:HEC201 2.0 23.4 1.0
NA C:HEC201 2.1 26.1 1.0
NC C:HEC201 2.1 27.9 1.0
NE2 C:HIS102 2.1 25.2 1.0
SD C:MET7 2.4 28.5 1.0
C4D C:HEC201 2.9 36.6 1.0
C4B C:HEC201 3.0 27.9 1.0
C1D C:HEC201 3.0 26.9 1.0
CD2 C:HIS102 3.0 25.8 1.0
C1A C:HEC201 3.0 27.1 1.0
C1C C:HEC201 3.1 26.0 1.0
C1B C:HEC201 3.1 32.1 1.0
C4C C:HEC201 3.1 27.0 1.0
CE1 C:HIS102 3.2 26.2 1.0
C4A C:HEC201 3.2 30.2 1.0
CHA C:HEC201 3.3 31.9 1.0
CHC C:HEC201 3.4 27.7 1.0
CE C:MET7 3.4 22.7 1.0
CHD C:HEC201 3.4 31.7 1.0
CG C:MET7 3.5 26.2 1.0
CHB C:HEC201 3.6 30.3 1.0
C3D C:HEC201 4.2 38.0 1.0
CB C:MET7 4.2 23.8 1.0
C2D C:HEC201 4.2 31.7 1.0
CG C:HIS102 4.2 19.4 1.0
C3B C:HEC201 4.2 31.4 1.0
ND1 C:HIS102 4.2 29.6 1.0
C2B C:HEC201 4.3 25.8 1.0
C2C C:HEC201 4.3 26.5 1.0
C2A C:HEC201 4.3 29.5 1.0
C3C C:HEC201 4.3 30.5 1.0
C3A C:HEC201 4.4 32.1 1.0

Iron binding site 4 out of 4 in 7su2

Go back to Iron Binding Sites List in 7su2
Iron binding site 4 out of 4 in the Crystal Structure of A Co-Bound RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of A Co-Bound RIDC1 Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe201

b:20.0
occ:1.00
FE G:HEC201 0.0 20.0 1.0
ND G:HEC201 2.0 20.0 1.0
NA G:HEC201 2.0 19.5 1.0
NC G:HEC201 2.1 18.2 1.0
NB G:HEC201 2.1 17.2 1.0
NE2 G:HIS102 2.1 13.8 1.0
SD G:MET7 2.4 23.3 1.0
C1A G:HEC201 3.0 21.2 1.0
C4D G:HEC201 3.0 24.0 1.0
C1D G:HEC201 3.0 20.2 1.0
CD2 G:HIS102 3.0 17.8 1.0
C4B G:HEC201 3.1 21.2 1.0
C4C G:HEC201 3.1 21.0 1.0
C1C G:HEC201 3.1 17.8 1.0
C4A G:HEC201 3.1 18.2 1.0
CE1 G:HIS102 3.1 17.8 1.0
C1B G:HEC201 3.1 19.2 1.0
CE G:MET7 3.2 27.4 1.0
CHA G:HEC201 3.4 22.8 1.0
CHD G:HEC201 3.4 19.6 1.0
CHC G:HEC201 3.4 21.6 1.0
CG G:MET7 3.5 18.8 1.0
CHB G:HEC201 3.5 21.4 1.0
CG G:HIS102 4.2 16.8 1.0
ND1 G:HIS102 4.2 17.2 1.0
CB G:MET7 4.2 19.7 1.0
C3D G:HEC201 4.2 23.1 1.0
C2A G:HEC201 4.2 23.7 1.0
C2D G:HEC201 4.2 24.7 1.0
C3A G:HEC201 4.3 23.1 1.0
C3B G:HEC201 4.3 17.8 1.0
C2C G:HEC201 4.3 17.1 1.0
C3C G:HEC201 4.3 18.8 1.0
C2B G:HEC201 4.3 21.4 1.0

Reference:

E.Golub, A.Kakkis. Crystal Structure of A Co-Bound RIDC1 Variant To Be Published.
Page generated: Fri Aug 9 00:56:47 2024

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