Iron in PDB 7su2: Crystal Structure of A Co-Bound RIDC1 Variant
Protein crystallography data
The structure of Crystal Structure of A Co-Bound RIDC1 Variant, PDB code: 7su2
was solved by
E.Golub,
A.Kakkis,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
37.00 /
2.00
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
47.875,
90.024,
52.042,
90,
95.91,
90
|
R / Rfree (%)
|
18.4 /
23.2
|
Other elements in 7su2:
The structure of Crystal Structure of A Co-Bound RIDC1 Variant also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of A Co-Bound RIDC1 Variant
(pdb code 7su2). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Crystal Structure of A Co-Bound RIDC1 Variant, PDB code: 7su2:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 7su2
Go back to
Iron Binding Sites List in 7su2
Iron binding site 1 out
of 4 in the Crystal Structure of A Co-Bound RIDC1 Variant
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of A Co-Bound RIDC1 Variant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:23.9
occ:1.00
|
FE
|
D:HEC201
|
0.0
|
23.9
|
1.0
|
ND
|
D:HEC201
|
2.0
|
21.1
|
1.0
|
NA
|
D:HEC201
|
2.0
|
24.4
|
1.0
|
NB
|
D:HEC201
|
2.0
|
19.6
|
1.0
|
NE2
|
D:HIS102
|
2.1
|
18.6
|
1.0
|
NC
|
D:HEC201
|
2.1
|
21.2
|
1.0
|
SD
|
D:MET7
|
2.4
|
24.2
|
1.0
|
C4D
|
D:HEC201
|
3.0
|
22.5
|
1.0
|
C1A
|
D:HEC201
|
3.0
|
24.6
|
1.0
|
CD2
|
D:HIS102
|
3.0
|
22.5
|
1.0
|
C4B
|
D:HEC201
|
3.0
|
18.0
|
1.0
|
C1D
|
D:HEC201
|
3.1
|
21.5
|
1.0
|
C1C
|
D:HEC201
|
3.1
|
23.2
|
1.0
|
C4A
|
D:HEC201
|
3.1
|
22.6
|
1.0
|
CE1
|
D:HIS102
|
3.1
|
23.7
|
1.0
|
C1B
|
D:HEC201
|
3.1
|
18.7
|
1.0
|
C4C
|
D:HEC201
|
3.2
|
22.8
|
1.0
|
CHA
|
D:HEC201
|
3.3
|
26.9
|
1.0
|
CE
|
D:MET7
|
3.4
|
22.9
|
1.0
|
CHC
|
D:HEC201
|
3.4
|
21.0
|
1.0
|
CG
|
D:MET7
|
3.5
|
23.4
|
1.0
|
CHB
|
D:HEC201
|
3.5
|
24.4
|
1.0
|
CHD
|
D:HEC201
|
3.5
|
20.3
|
1.0
|
CG
|
D:HIS102
|
4.2
|
24.4
|
1.0
|
CB
|
D:MET7
|
4.2
|
25.0
|
1.0
|
ND1
|
D:HIS102
|
4.2
|
20.4
|
1.0
|
C3D
|
D:HEC201
|
4.2
|
24.9
|
1.0
|
C2A
|
D:HEC201
|
4.2
|
23.8
|
1.0
|
C2D
|
D:HEC201
|
4.3
|
25.3
|
1.0
|
C3B
|
D:HEC201
|
4.3
|
17.6
|
1.0
|
C3A
|
D:HEC201
|
4.3
|
19.6
|
1.0
|
C2B
|
D:HEC201
|
4.3
|
23.7
|
1.0
|
C2C
|
D:HEC201
|
4.3
|
21.8
|
1.0
|
C3C
|
D:HEC201
|
4.4
|
19.6
|
1.0
|
|
Iron binding site 2 out
of 4 in 7su2
Go back to
Iron Binding Sites List in 7su2
Iron binding site 2 out
of 4 in the Crystal Structure of A Co-Bound RIDC1 Variant
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of A Co-Bound RIDC1 Variant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:24.3
occ:1.00
|
FE
|
A:HEC201
|
0.0
|
24.3
|
1.0
|
ND
|
A:HEC201
|
1.9
|
18.8
|
1.0
|
NB
|
A:HEC201
|
1.9
|
18.2
|
1.0
|
NA
|
A:HEC201
|
2.1
|
28.8
|
1.0
|
NC
|
A:HEC201
|
2.1
|
22.1
|
1.0
|
NE2
|
A:HIS102
|
2.1
|
23.2
|
1.0
|
SD
|
A:MET7
|
2.4
|
25.2
|
1.0
|
C4B
|
A:HEC201
|
2.9
|
20.9
|
1.0
|
C4D
|
A:HEC201
|
3.0
|
27.8
|
1.0
|
C1B
|
A:HEC201
|
3.0
|
27.8
|
1.0
|
C1D
|
A:HEC201
|
3.0
|
29.0
|
1.0
|
CE1
|
A:HIS102
|
3.0
|
28.8
|
1.0
|
C1C
|
A:HEC201
|
3.1
|
16.7
|
1.0
|
C1A
|
A:HEC201
|
3.1
|
23.6
|
1.0
|
C4A
|
A:HEC201
|
3.1
|
27.2
|
1.0
|
CD2
|
A:HIS102
|
3.1
|
20.1
|
1.0
|
C4C
|
A:HEC201
|
3.1
|
21.0
|
1.0
|
CE
|
A:MET7
|
3.3
|
27.2
|
1.0
|
CHC
|
A:HEC201
|
3.3
|
24.4
|
1.0
|
CG
|
A:MET7
|
3.4
|
23.1
|
1.0
|
CHA
|
A:HEC201
|
3.4
|
28.7
|
1.0
|
CHB
|
A:HEC201
|
3.5
|
26.1
|
1.0
|
CHD
|
A:HEC201
|
3.5
|
22.9
|
1.0
|
C3B
|
A:HEC201
|
4.2
|
20.5
|
1.0
|
C3D
|
A:HEC201
|
4.2
|
24.4
|
1.0
|
C2B
|
A:HEC201
|
4.2
|
22.5
|
1.0
|
ND1
|
A:HIS102
|
4.2
|
23.4
|
1.0
|
CB
|
A:MET7
|
4.2
|
21.8
|
1.0
|
C2D
|
A:HEC201
|
4.2
|
25.3
|
1.0
|
CG
|
A:HIS102
|
4.3
|
26.0
|
1.0
|
C2C
|
A:HEC201
|
4.3
|
21.9
|
1.0
|
C2A
|
A:HEC201
|
4.3
|
29.1
|
1.0
|
C3A
|
A:HEC201
|
4.3
|
26.9
|
1.0
|
C3C
|
A:HEC201
|
4.4
|
20.7
|
1.0
|
CA
|
A:MET7
|
4.9
|
25.2
|
1.0
|
|
Iron binding site 3 out
of 4 in 7su2
Go back to
Iron Binding Sites List in 7su2
Iron binding site 3 out
of 4 in the Crystal Structure of A Co-Bound RIDC1 Variant
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of A Co-Bound RIDC1 Variant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:28.7
occ:1.00
|
FE
|
C:HEC201
|
0.0
|
28.7
|
1.0
|
ND
|
C:HEC201
|
1.9
|
32.9
|
1.0
|
NB
|
C:HEC201
|
2.0
|
23.4
|
1.0
|
NA
|
C:HEC201
|
2.1
|
26.1
|
1.0
|
NC
|
C:HEC201
|
2.1
|
27.9
|
1.0
|
NE2
|
C:HIS102
|
2.1
|
25.2
|
1.0
|
SD
|
C:MET7
|
2.4
|
28.5
|
1.0
|
C4D
|
C:HEC201
|
2.9
|
36.6
|
1.0
|
C4B
|
C:HEC201
|
3.0
|
27.9
|
1.0
|
C1D
|
C:HEC201
|
3.0
|
26.9
|
1.0
|
CD2
|
C:HIS102
|
3.0
|
25.8
|
1.0
|
C1A
|
C:HEC201
|
3.0
|
27.1
|
1.0
|
C1C
|
C:HEC201
|
3.1
|
26.0
|
1.0
|
C1B
|
C:HEC201
|
3.1
|
32.1
|
1.0
|
C4C
|
C:HEC201
|
3.1
|
27.0
|
1.0
|
CE1
|
C:HIS102
|
3.2
|
26.2
|
1.0
|
C4A
|
C:HEC201
|
3.2
|
30.2
|
1.0
|
CHA
|
C:HEC201
|
3.3
|
31.9
|
1.0
|
CHC
|
C:HEC201
|
3.4
|
27.7
|
1.0
|
CE
|
C:MET7
|
3.4
|
22.7
|
1.0
|
CHD
|
C:HEC201
|
3.4
|
31.7
|
1.0
|
CG
|
C:MET7
|
3.5
|
26.2
|
1.0
|
CHB
|
C:HEC201
|
3.6
|
30.3
|
1.0
|
C3D
|
C:HEC201
|
4.2
|
38.0
|
1.0
|
CB
|
C:MET7
|
4.2
|
23.8
|
1.0
|
C2D
|
C:HEC201
|
4.2
|
31.7
|
1.0
|
CG
|
C:HIS102
|
4.2
|
19.4
|
1.0
|
C3B
|
C:HEC201
|
4.2
|
31.4
|
1.0
|
ND1
|
C:HIS102
|
4.2
|
29.6
|
1.0
|
C2B
|
C:HEC201
|
4.3
|
25.8
|
1.0
|
C2C
|
C:HEC201
|
4.3
|
26.5
|
1.0
|
C2A
|
C:HEC201
|
4.3
|
29.5
|
1.0
|
C3C
|
C:HEC201
|
4.3
|
30.5
|
1.0
|
C3A
|
C:HEC201
|
4.4
|
32.1
|
1.0
|
|
Iron binding site 4 out
of 4 in 7su2
Go back to
Iron Binding Sites List in 7su2
Iron binding site 4 out
of 4 in the Crystal Structure of A Co-Bound RIDC1 Variant
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of A Co-Bound RIDC1 Variant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe201
b:20.0
occ:1.00
|
FE
|
G:HEC201
|
0.0
|
20.0
|
1.0
|
ND
|
G:HEC201
|
2.0
|
20.0
|
1.0
|
NA
|
G:HEC201
|
2.0
|
19.5
|
1.0
|
NC
|
G:HEC201
|
2.1
|
18.2
|
1.0
|
NB
|
G:HEC201
|
2.1
|
17.2
|
1.0
|
NE2
|
G:HIS102
|
2.1
|
13.8
|
1.0
|
SD
|
G:MET7
|
2.4
|
23.3
|
1.0
|
C1A
|
G:HEC201
|
3.0
|
21.2
|
1.0
|
C4D
|
G:HEC201
|
3.0
|
24.0
|
1.0
|
C1D
|
G:HEC201
|
3.0
|
20.2
|
1.0
|
CD2
|
G:HIS102
|
3.0
|
17.8
|
1.0
|
C4B
|
G:HEC201
|
3.1
|
21.2
|
1.0
|
C4C
|
G:HEC201
|
3.1
|
21.0
|
1.0
|
C1C
|
G:HEC201
|
3.1
|
17.8
|
1.0
|
C4A
|
G:HEC201
|
3.1
|
18.2
|
1.0
|
CE1
|
G:HIS102
|
3.1
|
17.8
|
1.0
|
C1B
|
G:HEC201
|
3.1
|
19.2
|
1.0
|
CE
|
G:MET7
|
3.2
|
27.4
|
1.0
|
CHA
|
G:HEC201
|
3.4
|
22.8
|
1.0
|
CHD
|
G:HEC201
|
3.4
|
19.6
|
1.0
|
CHC
|
G:HEC201
|
3.4
|
21.6
|
1.0
|
CG
|
G:MET7
|
3.5
|
18.8
|
1.0
|
CHB
|
G:HEC201
|
3.5
|
21.4
|
1.0
|
CG
|
G:HIS102
|
4.2
|
16.8
|
1.0
|
ND1
|
G:HIS102
|
4.2
|
17.2
|
1.0
|
CB
|
G:MET7
|
4.2
|
19.7
|
1.0
|
C3D
|
G:HEC201
|
4.2
|
23.1
|
1.0
|
C2A
|
G:HEC201
|
4.2
|
23.7
|
1.0
|
C2D
|
G:HEC201
|
4.2
|
24.7
|
1.0
|
C3A
|
G:HEC201
|
4.3
|
23.1
|
1.0
|
C3B
|
G:HEC201
|
4.3
|
17.8
|
1.0
|
C2C
|
G:HEC201
|
4.3
|
17.1
|
1.0
|
C3C
|
G:HEC201
|
4.3
|
18.8
|
1.0
|
C2B
|
G:HEC201
|
4.3
|
21.4
|
1.0
|
|
Reference:
E.Golub,
A.Kakkis.
Crystal Structure of A Co-Bound RIDC1 Variant To Be Published.
Page generated: Fri Aug 9 00:56:47 2024
|