Iron in PDB 7tce: Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.
Enzymatic activity of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.
All present enzymatic activity of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.:
7.1.1.8;
Protein crystallography data
The structure of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone., PDB code: 7tce
was solved by
L.Esser,
D.Xia,
F.Zhou,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.43 /
3.85
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
127.273,
156.388,
141.407,
90,
96.67,
90
|
R / Rfree (%)
|
24.1 /
27.3
|
Other elements in 7tce:
The structure of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.
(pdb code 7tce). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 20 binding sites of Iron where determined in the
Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone., PDB code: 7tce:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 20 in 7tce
Go back to
Iron Binding Sites List in 7tce
Iron binding site 1 out
of 20 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:149.9
occ:1.00
|
FE
|
A:HEM1001
|
0.0
|
149.9
|
1.0
|
ND
|
A:HEM1001
|
2.0
|
143.6
|
1.0
|
NB
|
A:HEM1001
|
2.1
|
160.1
|
1.0
|
NC
|
A:HEM1001
|
2.1
|
151.2
|
1.0
|
NE2
|
A:HIS97
|
2.1
|
143.0
|
1.0
|
NA
|
A:HEM1001
|
2.1
|
159.9
|
1.0
|
NE2
|
A:HIS198
|
2.1
|
143.1
|
1.0
|
CE1
|
A:HIS198
|
3.0
|
144.2
|
1.0
|
CD2
|
A:HIS97
|
3.0
|
142.7
|
1.0
|
C1D
|
A:HEM1001
|
3.0
|
142.4
|
1.0
|
C1C
|
A:HEM1001
|
3.1
|
158.1
|
1.0
|
CE1
|
A:HIS97
|
3.1
|
142.9
|
1.0
|
C1B
|
A:HEM1001
|
3.1
|
169.1
|
1.0
|
C4D
|
A:HEM1001
|
3.1
|
146.2
|
1.0
|
C4B
|
A:HEM1001
|
3.1
|
166.4
|
1.0
|
CD2
|
A:HIS198
|
3.1
|
142.9
|
1.0
|
C4A
|
A:HEM1001
|
3.1
|
169.3
|
1.0
|
C4C
|
A:HEM1001
|
3.1
|
151.7
|
1.0
|
C1A
|
A:HEM1001
|
3.1
|
160.1
|
1.0
|
HE1
|
A:HIS198
|
3.2
|
173.2
|
1.0
|
HD2
|
A:HIS97
|
3.2
|
171.3
|
1.0
|
HE1
|
A:HIS97
|
3.3
|
171.6
|
1.0
|
HD2
|
A:HIS198
|
3.3
|
171.6
|
1.0
|
CHC
|
A:HEM1001
|
3.4
|
165.2
|
1.0
|
CHD
|
A:HEM1001
|
3.4
|
148.0
|
1.0
|
CHB
|
A:HEM1001
|
3.4
|
171.7
|
1.0
|
CHA
|
A:HEM1001
|
3.5
|
153.4
|
1.0
|
HA3
|
A:GLY146
|
4.0
|
166.2
|
1.0
|
ND1
|
A:HIS198
|
4.1
|
143.5
|
1.0
|
ND1
|
A:HIS97
|
4.2
|
142.7
|
1.0
|
CG
|
A:HIS198
|
4.2
|
141.0
|
1.0
|
CG
|
A:HIS97
|
4.2
|
143.1
|
1.0
|
C2D
|
A:HEM1001
|
4.3
|
139.3
|
1.0
|
C2C
|
A:HEM1001
|
4.3
|
156.0
|
1.0
|
C2B
|
A:HEM1001
|
4.3
|
174.0
|
1.0
|
C3D
|
A:HEM1001
|
4.3
|
142.9
|
1.0
|
C3B
|
A:HEM1001
|
4.3
|
172.8
|
1.0
|
C3C
|
A:HEM1001
|
4.3
|
156.7
|
1.0
|
C3A
|
A:HEM1001
|
4.3
|
171.7
|
1.0
|
C2A
|
A:HEM1001
|
4.3
|
164.9
|
1.0
|
HHC
|
A:HEM1001
|
4.4
|
198.3
|
1.0
|
HHD
|
A:HEM1001
|
4.4
|
177.7
|
1.0
|
HHB
|
A:HEM1001
|
4.4
|
206.2
|
1.0
|
HHA
|
A:HEM1001
|
4.4
|
184.1
|
1.0
|
HA2
|
A:GLY146
|
4.5
|
166.2
|
1.0
|
HA3
|
A:GLY62
|
4.7
|
163.4
|
1.0
|
HD12
|
A:LEU149
|
4.7
|
166.7
|
1.0
|
HE21
|
A:GLN58
|
4.7
|
155.3
|
1.0
|
HA2
|
A:GLY62
|
4.7
|
163.4
|
1.0
|
CA
|
A:GLY146
|
4.7
|
138.4
|
1.0
|
HD12
|
A:LEU65
|
5.0
|
173.6
|
1.0
|
|
Iron binding site 2 out
of 20 in 7tce
Go back to
Iron Binding Sites List in 7tce
Iron binding site 2 out
of 20 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:163.1
occ:1.00
|
FE
|
A:HEM1002
|
0.0
|
163.1
|
1.0
|
ND
|
A:HEM1002
|
2.0
|
166.6
|
1.0
|
NA
|
A:HEM1002
|
2.0
|
174.5
|
1.0
|
NE2
|
A:HIS111
|
2.1
|
156.0
|
1.0
|
NC
|
A:HEM1002
|
2.1
|
164.3
|
1.0
|
NB
|
A:HEM1002
|
2.1
|
167.0
|
1.0
|
NE2
|
A:HIS212
|
2.1
|
144.6
|
1.0
|
C4D
|
A:HEM1002
|
3.0
|
171.7
|
1.0
|
CD2
|
A:HIS111
|
3.0
|
155.5
|
1.0
|
C1A
|
A:HEM1002
|
3.0
|
179.8
|
1.0
|
C1D
|
A:HEM1002
|
3.0
|
169.0
|
1.0
|
CE1
|
A:HIS111
|
3.1
|
155.9
|
1.0
|
CD2
|
A:HIS212
|
3.1
|
141.9
|
1.0
|
CE1
|
A:HIS212
|
3.1
|
141.5
|
1.0
|
C1C
|
A:HEM1002
|
3.1
|
167.1
|
1.0
|
C4B
|
A:HEM1002
|
3.1
|
168.7
|
1.0
|
C4C
|
A:HEM1002
|
3.1
|
166.8
|
1.0
|
C4A
|
A:HEM1002
|
3.1
|
178.7
|
1.0
|
C1B
|
A:HEM1002
|
3.1
|
173.1
|
1.0
|
HD2
|
A:HIS111
|
3.2
|
186.7
|
1.0
|
HD2
|
A:HIS212
|
3.3
|
170.4
|
1.0
|
HE1
|
A:HIS212
|
3.3
|
169.9
|
1.0
|
HE1
|
A:HIS111
|
3.3
|
187.2
|
1.0
|
CHA
|
A:HEM1002
|
3.4
|
176.4
|
1.0
|
CHD
|
A:HEM1002
|
3.4
|
169.3
|
1.0
|
CHC
|
A:HEM1002
|
3.4
|
169.1
|
1.0
|
CHB
|
A:HEM1002
|
3.5
|
176.2
|
1.0
|
ND1
|
A:HIS111
|
4.2
|
155.2
|
1.0
|
CG
|
A:HIS111
|
4.2
|
154.3
|
1.0
|
ND1
|
A:HIS212
|
4.2
|
141.7
|
1.0
|
CG
|
A:HIS212
|
4.2
|
141.9
|
1.0
|
C3D
|
A:HEM1002
|
4.2
|
171.5
|
1.0
|
C2D
|
A:HEM1002
|
4.2
|
171.1
|
1.0
|
C2A
|
A:HEM1002
|
4.3
|
185.7
|
1.0
|
C3A
|
A:HEM1002
|
4.3
|
182.2
|
1.0
|
C2C
|
A:HEM1002
|
4.3
|
166.4
|
1.0
|
C3C
|
A:HEM1002
|
4.3
|
166.0
|
1.0
|
C3B
|
A:HEM1002
|
4.3
|
170.2
|
1.0
|
C2B
|
A:HEM1002
|
4.3
|
176.0
|
1.0
|
HHA
|
A:HEM1002
|
4.3
|
211.8
|
1.0
|
HHD
|
A:HEM1002
|
4.4
|
203.2
|
1.0
|
HHC
|
A:HEM1002
|
4.4
|
203.0
|
1.0
|
HHB
|
A:HEM1002
|
4.5
|
211.6
|
1.0
|
HD12
|
A:LEU51
|
4.5
|
181.2
|
1.0
|
HA2
|
A:GLY48
|
4.6
|
212.0
|
1.0
|
HH22
|
A:ARG114
|
4.6
|
182.7
|
1.0
|
HD13
|
A:LEU51
|
4.8
|
181.2
|
1.0
|
HG22
|
A:THR128
|
4.8
|
192.3
|
1.0
|
HH21
|
A:ARG114
|
4.8
|
182.7
|
1.0
|
|
Iron binding site 3 out
of 20 in 7tce
Go back to
Iron Binding Sites List in 7tce
Iron binding site 3 out
of 20 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1001
b:153.0
occ:1.00
|
FE
|
B:HEC1001
|
0.0
|
153.0
|
1.0
|
NE2
|
B:HIS40
|
2.0
|
169.5
|
1.0
|
NA
|
B:HEC1001
|
2.0
|
148.1
|
1.0
|
NC
|
B:HEC1001
|
2.1
|
150.6
|
1.0
|
ND
|
B:HEC1001
|
2.1
|
149.1
|
1.0
|
NB
|
B:HEC1001
|
2.1
|
144.4
|
1.0
|
SD
|
B:MET185
|
2.2
|
145.4
|
1.0
|
CD2
|
B:HIS40
|
2.9
|
174.8
|
1.0
|
CE1
|
B:HIS40
|
3.0
|
174.3
|
1.0
|
C1A
|
B:HEC1001
|
3.1
|
149.3
|
1.0
|
HD2
|
B:HIS40
|
3.1
|
209.8
|
1.0
|
C4D
|
B:HEC1001
|
3.1
|
149.8
|
1.0
|
C4C
|
B:HEC1001
|
3.1
|
152.6
|
1.0
|
C4A
|
B:HEC1001
|
3.1
|
144.9
|
1.0
|
C1C
|
B:HEC1001
|
3.1
|
150.1
|
1.0
|
C1D
|
B:HEC1001
|
3.1
|
150.4
|
1.0
|
C4B
|
B:HEC1001
|
3.1
|
144.4
|
1.0
|
C1B
|
B:HEC1001
|
3.1
|
142.1
|
1.0
|
HG3
|
B:MET185
|
3.2
|
176.7
|
1.0
|
HE1
|
B:HIS40
|
3.3
|
209.3
|
1.0
|
CG
|
B:MET185
|
3.4
|
147.1
|
1.0
|
CHA
|
B:HEC1001
|
3.4
|
149.8
|
1.0
|
CHD
|
B:HEC1001
|
3.4
|
151.1
|
1.0
|
CHC
|
B:HEC1001
|
3.4
|
146.2
|
1.0
|
CHB
|
B:HEC1001
|
3.5
|
142.4
|
1.0
|
CE
|
B:MET185
|
3.7
|
145.3
|
1.0
|
HE1
|
B:MET185
|
3.9
|
174.5
|
1.0
|
HB2
|
B:MET185
|
4.0
|
180.0
|
1.0
|
HE2
|
B:MET185
|
4.0
|
174.5
|
1.0
|
HG2
|
B:MET185
|
4.1
|
176.7
|
1.0
|
CG
|
B:HIS40
|
4.1
|
176.4
|
1.0
|
ND1
|
B:HIS40
|
4.1
|
174.6
|
1.0
|
C2A
|
B:HEC1001
|
4.3
|
147.9
|
1.0
|
C3A
|
B:HEC1001
|
4.3
|
145.6
|
1.0
|
C3C
|
B:HEC1001
|
4.3
|
155.8
|
1.0
|
C2C
|
B:HEC1001
|
4.3
|
153.2
|
1.0
|
CB
|
B:MET185
|
4.3
|
149.9
|
1.0
|
C3D
|
B:HEC1001
|
4.3
|
151.3
|
1.0
|
C3B
|
B:HEC1001
|
4.3
|
144.7
|
1.0
|
C2B
|
B:HEC1001
|
4.3
|
141.2
|
1.0
|
C2D
|
B:HEC1001
|
4.3
|
151.5
|
1.0
|
HHA
|
B:HEC1001
|
4.4
|
179.8
|
1.0
|
HE3
|
B:MET185
|
4.4
|
174.5
|
1.0
|
HHD
|
B:HEC1001
|
4.4
|
181.4
|
1.0
|
HHC
|
B:HEC1001
|
4.4
|
175.5
|
1.0
|
HHB
|
B:HEC1001
|
4.4
|
171.0
|
1.0
|
HG3
|
B:PRO188
|
4.6
|
188.2
|
1.0
|
HD21
|
B:LEU100
|
4.7
|
186.0
|
1.0
|
HB3
|
B:MET185
|
4.8
|
180.0
|
1.0
|
HD2
|
B:PRO98
|
4.9
|
194.4
|
1.0
|
HB1
|
B:ALA97
|
4.9
|
200.2
|
1.0
|
HD11
|
B:LEU100
|
5.0
|
184.0
|
1.0
|
HB3
|
B:PRO188
|
5.0
|
189.7
|
1.0
|
HB2
|
B:CYS39
|
5.0
|
201.2
|
1.0
|
|
Iron binding site 4 out
of 20 in 7tce
Go back to
Iron Binding Sites List in 7tce
Iron binding site 4 out
of 20 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1001
b:161.4
occ:1.00
|
FE1
|
C:FES1001
|
0.0
|
161.4
|
1.0
|
S2
|
C:FES1001
|
2.2
|
254.7
|
1.0
|
S1
|
C:FES1001
|
2.2
|
209.3
|
1.0
|
SG
|
C:CYS129
|
2.3
|
149.1
|
1.0
|
SG
|
C:CYS149
|
2.3
|
148.3
|
1.0
|
FE2
|
C:FES1001
|
2.7
|
136.5
|
1.0
|
HB3
|
C:CYS129
|
2.9
|
181.6
|
1.0
|
HB3
|
C:HIS131
|
3.0
|
177.7
|
1.0
|
CB
|
C:CYS129
|
3.1
|
151.3
|
1.0
|
HB2
|
C:CYS129
|
3.3
|
181.6
|
1.0
|
HB2
|
C:CYS134
|
3.4
|
190.5
|
1.0
|
HB2
|
C:CYS151
|
3.5
|
197.8
|
1.0
|
CB
|
C:CYS149
|
3.5
|
153.7
|
1.0
|
HB3
|
C:CYS149
|
3.6
|
184.5
|
1.0
|
HB2
|
C:CYS149
|
3.6
|
184.5
|
1.0
|
H
|
C:LEU132
|
3.8
|
204.9
|
1.0
|
CB
|
C:HIS131
|
3.8
|
148.0
|
1.0
|
H
|
C:CYS134
|
3.9
|
186.3
|
1.0
|
HB2
|
C:HIS131
|
3.9
|
177.7
|
1.0
|
HB2
|
C:SER154
|
4.0
|
198.3
|
1.0
|
H
|
C:HIS131
|
4.1
|
188.5
|
1.0
|
HG
|
C:SER154
|
4.3
|
198.5
|
1.0
|
CB
|
C:CYS134
|
4.3
|
158.7
|
1.0
|
H
|
C:HIS152
|
4.3
|
187.2
|
1.0
|
CB
|
C:CYS151
|
4.4
|
164.7
|
1.0
|
ND1
|
C:HIS131
|
4.4
|
138.6
|
1.0
|
OG
|
C:SER154
|
4.5
|
165.3
|
1.0
|
HB2
|
C:HIS152
|
4.5
|
178.1
|
1.0
|
ND1
|
C:HIS152
|
4.5
|
140.3
|
1.0
|
CA
|
C:CYS129
|
4.5
|
153.8
|
1.0
|
H
|
C:CYS151
|
4.5
|
202.1
|
1.0
|
H
|
C:GLY133
|
4.6
|
199.3
|
1.0
|
N
|
C:LEU132
|
4.6
|
170.7
|
1.0
|
CG
|
C:HIS131
|
4.6
|
140.8
|
1.0
|
HB3
|
C:CYS151
|
4.6
|
197.8
|
1.0
|
HH
|
C:TYR156
|
4.6
|
190.9
|
1.0
|
N
|
C:CYS134
|
4.7
|
155.2
|
1.0
|
SG
|
C:CYS134
|
4.7
|
161.3
|
1.0
|
CB
|
C:SER154
|
4.7
|
165.2
|
1.0
|
N
|
C:HIS131
|
4.8
|
157.0
|
1.0
|
CA
|
C:HIS131
|
4.8
|
156.2
|
1.0
|
CA
|
C:CYS149
|
4.9
|
161.1
|
1.0
|
HB3
|
C:CYS134
|
4.9
|
190.5
|
1.0
|
C
|
C:CYS129
|
4.9
|
158.8
|
1.0
|
HB2
|
C:ALA167
|
4.9
|
215.9
|
1.0
|
HA
|
C:CYS129
|
4.9
|
184.7
|
1.0
|
N
|
C:HIS152
|
4.9
|
156.0
|
1.0
|
HB2
|
C:LEU132
|
4.9
|
214.0
|
1.0
|
H
|
C:SER154
|
5.0
|
195.9
|
1.0
|
CA
|
C:CYS134
|
5.0
|
155.8
|
1.0
|
|
Iron binding site 5 out
of 20 in 7tce
Go back to
Iron Binding Sites List in 7tce
Iron binding site 5 out
of 20 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1001
b:136.5
occ:1.00
|
FE2
|
C:FES1001
|
0.0
|
136.5
|
1.0
|
ND1
|
C:HIS131
|
2.1
|
138.6
|
1.0
|
ND1
|
C:HIS152
|
2.1
|
140.3
|
1.0
|
S2
|
C:FES1001
|
2.2
|
254.7
|
1.0
|
S1
|
C:FES1001
|
2.2
|
209.3
|
1.0
|
HB2
|
C:HIS152
|
2.6
|
178.1
|
1.0
|
HB3
|
C:HIS131
|
2.6
|
177.7
|
1.0
|
FE1
|
C:FES1001
|
2.7
|
161.4
|
1.0
|
CG
|
C:HIS131
|
3.0
|
140.8
|
1.0
|
CG
|
C:HIS152
|
3.0
|
142.6
|
1.0
|
CE1
|
C:HIS131
|
3.2
|
138.7
|
1.0
|
CE1
|
C:HIS152
|
3.2
|
141.4
|
1.0
|
CB
|
C:HIS131
|
3.2
|
148.0
|
1.0
|
CB
|
C:HIS152
|
3.2
|
148.4
|
1.0
|
HE1
|
C:HIS152
|
3.4
|
169.8
|
1.0
|
HE1
|
C:HIS131
|
3.4
|
166.6
|
1.0
|
HB2
|
C:HIS131
|
3.6
|
177.7
|
1.0
|
HB2
|
C:CYS151
|
3.6
|
197.8
|
1.0
|
H
|
C:HIS152
|
3.7
|
187.2
|
1.0
|
HB3
|
C:CYS151
|
3.9
|
197.8
|
1.0
|
H
|
C:LEU132
|
3.9
|
204.9
|
1.0
|
HB2
|
C:LEU132
|
3.9
|
214.0
|
1.0
|
HB3
|
C:HIS152
|
3.9
|
178.1
|
1.0
|
N
|
C:HIS152
|
4.0
|
156.0
|
1.0
|
CD2
|
C:HIS131
|
4.1
|
138.9
|
1.0
|
CB
|
C:CYS151
|
4.2
|
164.7
|
1.0
|
CD2
|
C:HIS152
|
4.2
|
141.3
|
1.0
|
NE2
|
C:HIS131
|
4.2
|
139.0
|
1.0
|
CA
|
C:HIS152
|
4.2
|
153.8
|
1.0
|
HG
|
C:LEU132
|
4.2
|
217.8
|
1.0
|
HG
|
C:SER154
|
4.2
|
198.5
|
1.0
|
HD11
|
C:LEU132
|
4.2
|
218.6
|
1.0
|
NE2
|
C:HIS152
|
4.2
|
141.5
|
1.0
|
N
|
C:LEU132
|
4.3
|
170.7
|
1.0
|
SG
|
C:CYS149
|
4.4
|
148.3
|
1.0
|
SG
|
C:CYS129
|
4.5
|
149.1
|
1.0
|
CA
|
C:HIS131
|
4.6
|
156.2
|
1.0
|
C
|
C:CYS151
|
4.6
|
160.8
|
1.0
|
HD12
|
C:LEU132
|
4.6
|
218.6
|
1.0
|
CB
|
C:LEU132
|
4.7
|
178.2
|
1.0
|
HG2
|
C:PRO166
|
4.7
|
214.8
|
1.0
|
OG
|
C:SER154
|
4.7
|
165.3
|
1.0
|
CG
|
C:LEU132
|
4.7
|
181.4
|
1.0
|
CD1
|
C:LEU132
|
4.7
|
182.1
|
1.0
|
HB2
|
C:PRO166
|
4.7
|
215.8
|
1.0
|
C
|
C:HIS131
|
4.8
|
163.5
|
1.0
|
HD2
|
C:PRO166
|
4.9
|
216.6
|
1.0
|
H
|
C:HIS131
|
4.9
|
188.5
|
1.0
|
HA
|
C:HIS152
|
5.0
|
184.7
|
1.0
|
HD2
|
C:HIS131
|
5.0
|
166.8
|
1.0
|
CA
|
C:CYS151
|
5.0
|
164.6
|
1.0
|
C
|
C:HIS152
|
5.0
|
158.1
|
1.0
|
|
Iron binding site 6 out
of 20 in 7tce
Go back to
Iron Binding Sites List in 7tce
Iron binding site 6 out
of 20 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe1001
b:157.7
occ:1.00
|
FE
|
E:HEM1001
|
0.0
|
157.7
|
1.0
|
NA
|
E:HEM1001
|
2.0
|
170.1
|
1.0
|
NB
|
E:HEM1001
|
2.0
|
161.3
|
1.0
|
ND
|
E:HEM1001
|
2.0
|
157.5
|
1.0
|
NC
|
E:HEM1001
|
2.0
|
156.3
|
1.0
|
NE2
|
E:HIS198
|
2.1
|
150.9
|
1.0
|
NE2
|
E:HIS97
|
2.1
|
154.4
|
1.0
|
CE1
|
E:HIS198
|
3.0
|
151.7
|
1.0
|
CE1
|
E:HIS97
|
3.0
|
155.0
|
1.0
|
C1D
|
E:HEM1001
|
3.1
|
156.0
|
1.0
|
C4C
|
E:HEM1001
|
3.1
|
157.7
|
1.0
|
C4A
|
E:HEM1001
|
3.1
|
176.7
|
1.0
|
C1B
|
E:HEM1001
|
3.1
|
167.2
|
1.0
|
C4B
|
E:HEM1001
|
3.1
|
163.2
|
1.0
|
C1A
|
E:HEM1001
|
3.1
|
176.1
|
1.0
|
C4D
|
E:HEM1001
|
3.1
|
162.4
|
1.0
|
C1C
|
E:HEM1001
|
3.1
|
158.8
|
1.0
|
CD2
|
E:HIS198
|
3.1
|
150.3
|
1.0
|
CD2
|
E:HIS97
|
3.1
|
154.6
|
1.0
|
HE1
|
E:HIS198
|
3.1
|
182.1
|
1.0
|
HE1
|
E:HIS97
|
3.2
|
186.1
|
1.0
|
HD2
|
E:HIS97
|
3.3
|
185.6
|
1.0
|
HD2
|
E:HIS198
|
3.3
|
180.5
|
1.0
|
CHD
|
E:HEM1001
|
3.4
|
157.1
|
1.0
|
CHB
|
E:HEM1001
|
3.4
|
172.9
|
1.0
|
CHC
|
E:HEM1001
|
3.4
|
162.8
|
1.0
|
CHA
|
E:HEM1001
|
3.4
|
170.0
|
1.0
|
HA3
|
E:GLY146
|
3.9
|
154.2
|
1.0
|
ND1
|
E:HIS198
|
4.1
|
151.0
|
1.0
|
ND1
|
E:HIS97
|
4.2
|
154.9
|
1.0
|
CG
|
E:HIS198
|
4.2
|
148.5
|
1.0
|
CG
|
E:HIS97
|
4.2
|
154.9
|
1.0
|
C2A
|
E:HEM1001
|
4.3
|
185.5
|
1.0
|
C3A
|
E:HEM1001
|
4.3
|
184.7
|
1.0
|
C2D
|
E:HEM1001
|
4.3
|
154.6
|
1.0
|
C2B
|
E:HEM1001
|
4.3
|
166.5
|
1.0
|
C3C
|
E:HEM1001
|
4.3
|
160.4
|
1.0
|
C3B
|
E:HEM1001
|
4.3
|
165.5
|
1.0
|
C3D
|
E:HEM1001
|
4.3
|
158.8
|
1.0
|
C2C
|
E:HEM1001
|
4.3
|
156.8
|
1.0
|
HHD
|
E:HEM1001
|
4.4
|
188.6
|
1.0
|
HHB
|
E:HEM1001
|
4.4
|
207.6
|
1.0
|
HHC
|
E:HEM1001
|
4.4
|
195.4
|
1.0
|
HHA
|
E:HEM1001
|
4.4
|
204.1
|
1.0
|
HA2
|
E:GLY146
|
4.5
|
154.2
|
1.0
|
HE21
|
E:GLN58
|
4.5
|
173.6
|
1.0
|
HD12
|
E:LEU149
|
4.6
|
170.0
|
1.0
|
CA
|
E:GLY146
|
4.7
|
128.4
|
1.0
|
HA3
|
E:GLY62
|
4.8
|
153.2
|
1.0
|
HB3
|
E:GLN58
|
4.8
|
151.5
|
1.0
|
HA2
|
E:GLY62
|
4.9
|
153.2
|
1.0
|
|
Iron binding site 7 out
of 20 in 7tce
Go back to
Iron Binding Sites List in 7tce
Iron binding site 7 out
of 20 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe1002
b:141.7
occ:1.00
|
FE
|
E:HEM1002
|
0.0
|
141.7
|
1.0
|
ND
|
E:HEM1002
|
2.0
|
147.5
|
1.0
|
NA
|
E:HEM1002
|
2.0
|
147.3
|
1.0
|
NC
|
E:HEM1002
|
2.1
|
138.0
|
1.0
|
NE2
|
E:HIS111
|
2.1
|
138.3
|
1.0
|
NB
|
E:HEM1002
|
2.1
|
140.4
|
1.0
|
NE2
|
E:HIS212
|
2.1
|
134.4
|
1.0
|
CD2
|
E:HIS111
|
3.0
|
138.7
|
1.0
|
C4D
|
E:HEM1002
|
3.0
|
156.3
|
1.0
|
C1A
|
E:HEM1002
|
3.0
|
154.4
|
1.0
|
C1D
|
E:HEM1002
|
3.0
|
150.1
|
1.0
|
CE1
|
E:HIS212
|
3.1
|
134.5
|
1.0
|
CD2
|
E:HIS212
|
3.1
|
134.6
|
1.0
|
C4C
|
E:HEM1002
|
3.1
|
141.7
|
1.0
|
C4A
|
E:HEM1002
|
3.1
|
150.8
|
1.0
|
C1C
|
E:HEM1002
|
3.1
|
139.0
|
1.0
|
CE1
|
E:HIS111
|
3.1
|
138.7
|
1.0
|
C4B
|
E:HEM1002
|
3.1
|
140.8
|
1.0
|
C1B
|
E:HEM1002
|
3.1
|
145.2
|
1.0
|
HD2
|
E:HIS111
|
3.1
|
166.5
|
1.0
|
HE1
|
E:HIS212
|
3.2
|
161.5
|
1.0
|
HD2
|
E:HIS212
|
3.3
|
161.6
|
1.0
|
HE1
|
E:HIS111
|
3.3
|
166.6
|
1.0
|
CHA
|
E:HEM1002
|
3.4
|
156.1
|
1.0
|
CHD
|
E:HEM1002
|
3.4
|
148.0
|
1.0
|
CHC
|
E:HEM1002
|
3.5
|
139.5
|
1.0
|
CHB
|
E:HEM1002
|
3.5
|
148.5
|
1.0
|
ND1
|
E:HIS212
|
4.2
|
134.6
|
1.0
|
CG
|
E:HIS111
|
4.2
|
137.7
|
1.0
|
ND1
|
E:HIS111
|
4.2
|
138.8
|
1.0
|
CG
|
E:HIS212
|
4.2
|
135.4
|
1.0
|
C3D
|
E:HEM1002
|
4.2
|
162.8
|
1.0
|
C2D
|
E:HEM1002
|
4.2
|
155.6
|
1.0
|
C2A
|
E:HEM1002
|
4.3
|
159.3
|
1.0
|
C3A
|
E:HEM1002
|
4.3
|
155.0
|
1.0
|
C2C
|
E:HEM1002
|
4.3
|
139.5
|
1.0
|
C3C
|
E:HEM1002
|
4.3
|
138.4
|
1.0
|
C3B
|
E:HEM1002
|
4.3
|
143.6
|
1.0
|
C2B
|
E:HEM1002
|
4.3
|
145.2
|
1.0
|
HHA
|
E:HEM1002
|
4.4
|
187.4
|
1.0
|
HHD
|
E:HEM1002
|
4.4
|
177.7
|
1.0
|
HHC
|
E:HEM1002
|
4.4
|
167.5
|
1.0
|
HHB
|
E:HEM1002
|
4.4
|
178.3
|
1.0
|
HD12
|
E:LEU51
|
4.5
|
181.2
|
1.0
|
HH22
|
E:ARG114
|
4.7
|
186.8
|
1.0
|
HA2
|
E:GLY48
|
4.8
|
192.3
|
1.0
|
HD13
|
E:LEU51
|
4.9
|
181.2
|
1.0
|
HH21
|
E:ARG114
|
5.0
|
186.8
|
1.0
|
|
Iron binding site 8 out
of 20 in 7tce
Go back to
Iron Binding Sites List in 7tce
Iron binding site 8 out
of 20 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe1001
b:174.8
occ:1.00
|
FE
|
F:HEC1001
|
0.0
|
174.8
|
1.0
|
NE2
|
F:HIS40
|
2.0
|
177.7
|
1.0
|
NC
|
F:HEC1001
|
2.1
|
182.2
|
1.0
|
NA
|
F:HEC1001
|
2.1
|
170.6
|
1.0
|
NB
|
F:HEC1001
|
2.1
|
175.4
|
1.0
|
ND
|
F:HEC1001
|
2.1
|
172.2
|
1.0
|
SD
|
F:MET185
|
2.2
|
178.6
|
1.0
|
CD2
|
F:HIS40
|
3.0
|
177.9
|
1.0
|
CE1
|
F:HIS40
|
3.0
|
177.7
|
1.0
|
C4C
|
F:HEC1001
|
3.1
|
182.9
|
1.0
|
C1C
|
F:HEC1001
|
3.1
|
185.2
|
1.0
|
C4D
|
F:HEC1001
|
3.1
|
169.7
|
1.0
|
C1D
|
F:HEC1001
|
3.1
|
174.2
|
1.0
|
C4B
|
F:HEC1001
|
3.1
|
179.2
|
1.0
|
C1A
|
F:HEC1001
|
3.1
|
167.9
|
1.0
|
C4A
|
F:HEC1001
|
3.1
|
172.1
|
1.0
|
C1B
|
F:HEC1001
|
3.1
|
172.9
|
1.0
|
HD2
|
F:HIS40
|
3.1
|
213.6
|
1.0
|
HE1
|
F:HIS40
|
3.2
|
213.4
|
1.0
|
CE
|
F:MET185
|
3.4
|
184.8
|
1.0
|
CHD
|
F:HEC1001
|
3.4
|
179.4
|
1.0
|
CHC
|
F:HEC1001
|
3.4
|
184.1
|
1.0
|
CHA
|
F:HEC1001
|
3.4
|
168.4
|
1.0
|
CHB
|
F:HEC1001
|
3.5
|
171.8
|
1.0
|
HE1
|
F:MET185
|
3.5
|
221.8
|
1.0
|
CG
|
F:MET185
|
3.5
|
176.0
|
1.0
|
HE2
|
F:MET185
|
3.6
|
221.8
|
1.0
|
HG3
|
F:MET185
|
3.6
|
211.3
|
1.0
|
HB2
|
F:MET185
|
3.8
|
207.5
|
1.0
|
ND1
|
F:HIS40
|
4.1
|
177.7
|
1.0
|
CG
|
F:HIS40
|
4.1
|
177.6
|
1.0
|
HE3
|
F:MET185
|
4.2
|
221.8
|
1.0
|
CB
|
F:MET185
|
4.2
|
172.8
|
1.0
|
HG2
|
F:MET185
|
4.3
|
211.3
|
1.0
|
C3C
|
F:HEC1001
|
4.3
|
185.0
|
1.0
|
C2C
|
F:HEC1001
|
4.3
|
186.0
|
1.0
|
C3A
|
F:HEC1001
|
4.3
|
176.8
|
1.0
|
C2A
|
F:HEC1001
|
4.3
|
167.0
|
1.0
|
C3B
|
F:HEC1001
|
4.3
|
177.3
|
1.0
|
C3D
|
F:HEC1001
|
4.3
|
170.0
|
1.0
|
C2D
|
F:HEC1001
|
4.3
|
171.4
|
1.0
|
C2B
|
F:HEC1001
|
4.3
|
173.6
|
1.0
|
HHD
|
F:HEC1001
|
4.4
|
215.4
|
1.0
|
HHC
|
F:HEC1001
|
4.4
|
221.0
|
1.0
|
HHA
|
F:HEC1001
|
4.4
|
202.2
|
1.0
|
HHB
|
F:HEC1001
|
4.4
|
206.3
|
1.0
|
HD21
|
F:LEU100
|
4.5
|
206.2
|
1.0
|
HB3
|
F:MET185
|
4.7
|
207.5
|
1.0
|
HD11
|
F:LEU100
|
4.7
|
207.0
|
1.0
|
HG3
|
F:PRO188
|
4.8
|
191.1
|
1.0
|
HD2
|
F:PRO98
|
4.9
|
208.7
|
1.0
|
|
Iron binding site 9 out
of 20 in 7tce
Go back to
Iron Binding Sites List in 7tce
Iron binding site 9 out
of 20 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe1001
b:301.5
occ:1.00
|
FE1
|
G:FES1001
|
0.0
|
301.5
|
1.0
|
S1
|
G:FES1001
|
2.2
|
355.9
|
1.0
|
S2
|
G:FES1001
|
2.2
|
255.3
|
1.0
|
SG
|
G:CYS129
|
2.3
|
149.9
|
1.0
|
SG
|
G:CYS149
|
2.3
|
169.2
|
1.0
|
FE2
|
G:FES1001
|
2.7
|
209.5
|
1.0
|
HB3
|
G:CYS129
|
3.0
|
182.9
|
1.0
|
HB3
|
G:HIS131
|
3.0
|
227.2
|
1.0
|
CB
|
G:CYS129
|
3.1
|
152.4
|
1.0
|
HB2
|
G:CYS129
|
3.3
|
182.9
|
1.0
|
HB2
|
G:CYS134
|
3.3
|
224.2
|
1.0
|
HB2
|
G:CYS151
|
3.4
|
240.0
|
1.0
|
CB
|
G:CYS149
|
3.5
|
174.4
|
1.0
|
HB3
|
G:CYS149
|
3.6
|
209.4
|
1.0
|
HB2
|
G:CYS149
|
3.7
|
209.4
|
1.0
|
H
|
G:LEU132
|
3.8
|
228.7
|
1.0
|
CB
|
G:HIS131
|
3.9
|
189.2
|
1.0
|
H
|
G:CYS134
|
3.9
|
215.3
|
1.0
|
HB2
|
G:HIS131
|
3.9
|
227.2
|
1.0
|
H
|
G:HIS131
|
4.1
|
224.8
|
1.0
|
CB
|
G:CYS134
|
4.2
|
186.8
|
1.0
|
HG
|
G:SER154
|
4.3
|
233.3
|
1.0
|
H
|
G:HIS152
|
4.3
|
241.0
|
1.0
|
HB2
|
G:SER154
|
4.3
|
231.6
|
1.0
|
CB
|
G:CYS151
|
4.3
|
199.9
|
1.0
|
ND1
|
G:HIS131
|
4.4
|
197.9
|
1.0
|
H
|
G:CYS151
|
4.5
|
235.8
|
1.0
|
ND1
|
G:HIS152
|
4.5
|
202.4
|
1.0
|
HB2
|
G:HIS152
|
4.5
|
241.4
|
1.0
|
CA
|
G:CYS129
|
4.6
|
156.4
|
1.0
|
HB3
|
G:CYS151
|
4.6
|
240.0
|
1.0
|
N
|
G:LEU132
|
4.6
|
190.5
|
1.0
|
OG
|
G:SER154
|
4.6
|
194.3
|
1.0
|
CG
|
G:HIS131
|
4.6
|
193.3
|
1.0
|
SG
|
G:CYS134
|
4.7
|
195.3
|
1.0
|
H
|
G:GLY133
|
4.7
|
236.6
|
1.0
|
N
|
G:CYS134
|
4.7
|
179.3
|
1.0
|
HB2
|
G:ALA167
|
4.8
|
215.6
|
1.0
|
N
|
G:HIS131
|
4.8
|
187.2
|
1.0
|
HB3
|
G:CYS134
|
4.8
|
224.2
|
1.0
|
CA
|
G:HIS131
|
4.9
|
188.0
|
1.0
|
N
|
G:HIS152
|
4.9
|
200.7
|
1.0
|
CA
|
G:CYS149
|
4.9
|
181.5
|
1.0
|
HA
|
G:CYS129
|
4.9
|
187.8
|
1.0
|
HB2
|
G:LEU132
|
4.9
|
228.3
|
1.0
|
C
|
G:CYS129
|
5.0
|
164.2
|
1.0
|
CB
|
G:SER154
|
5.0
|
192.9
|
1.0
|
CA
|
G:CYS134
|
5.0
|
177.1
|
1.0
|
|
Iron binding site 10 out
of 20 in 7tce
Go back to
Iron Binding Sites List in 7tce
Iron binding site 10 out
of 20 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe1001
b:209.5
occ:1.00
|
FE2
|
G:FES1001
|
0.0
|
209.5
|
1.0
|
ND1
|
G:HIS131
|
2.1
|
197.9
|
1.0
|
ND1
|
G:HIS152
|
2.1
|
202.4
|
1.0
|
S2
|
G:FES1001
|
2.2
|
255.3
|
1.0
|
S1
|
G:FES1001
|
2.2
|
355.9
|
1.0
|
HB2
|
G:HIS152
|
2.6
|
241.4
|
1.0
|
HB3
|
G:HIS131
|
2.6
|
227.2
|
1.0
|
FE1
|
G:FES1001
|
2.7
|
301.5
|
1.0
|
CG
|
G:HIS131
|
3.0
|
193.3
|
1.0
|
CG
|
G:HIS152
|
3.0
|
199.8
|
1.0
|
CE1
|
G:HIS131
|
3.2
|
194.8
|
1.0
|
CE1
|
G:HIS152
|
3.2
|
200.2
|
1.0
|
CB
|
G:HIS131
|
3.2
|
189.2
|
1.0
|
CB
|
G:HIS152
|
3.2
|
201.1
|
1.0
|
HE1
|
G:HIS131
|
3.4
|
233.8
|
1.0
|
HE1
|
G:HIS152
|
3.4
|
240.4
|
1.0
|
HB2
|
G:HIS131
|
3.6
|
227.2
|
1.0
|
HB2
|
G:CYS151
|
3.6
|
240.0
|
1.0
|
H
|
G:HIS152
|
3.7
|
241.0
|
1.0
|
HB3
|
G:CYS151
|
3.8
|
240.0
|
1.0
|
HB3
|
G:HIS152
|
3.9
|
241.4
|
1.0
|
H
|
G:LEU132
|
3.9
|
228.7
|
1.0
|
N
|
G:HIS152
|
3.9
|
200.7
|
1.0
|
HB2
|
G:LEU132
|
4.0
|
228.3
|
1.0
|
HD11
|
G:LEU132
|
4.2
|
223.2
|
1.0
|
CD2
|
G:HIS131
|
4.2
|
194.6
|
1.0
|
CB
|
G:CYS151
|
4.2
|
199.9
|
1.0
|
CA
|
G:HIS152
|
4.2
|
203.2
|
1.0
|
CD2
|
G:HIS152
|
4.2
|
199.9
|
1.0
|
NE2
|
G:HIS131
|
4.2
|
194.5
|
1.0
|
HG
|
G:LEU132
|
4.2
|
224.5
|
1.0
|
NE2
|
G:HIS152
|
4.2
|
199.9
|
1.0
|
SG
|
G:CYS129
|
4.4
|
149.9
|
1.0
|
N
|
G:LEU132
|
4.4
|
190.5
|
1.0
|
HB2
|
G:PRO166
|
4.4
|
202.5
|
1.0
|
SG
|
G:CYS149
|
4.4
|
169.2
|
1.0
|
HG2
|
G:PRO166
|
4.5
|
202.6
|
1.0
|
CA
|
G:HIS131
|
4.6
|
188.0
|
1.0
|
C
|
G:CYS151
|
4.6
|
197.9
|
1.0
|
HG
|
G:SER154
|
4.6
|
233.3
|
1.0
|
HD12
|
G:LEU132
|
4.7
|
223.2
|
1.0
|
CB
|
G:LEU132
|
4.7
|
190.2
|
1.0
|
CD1
|
G:LEU132
|
4.7
|
185.9
|
1.0
|
CG
|
G:LEU132
|
4.8
|
187.0
|
1.0
|
C
|
G:HIS131
|
4.8
|
187.9
|
1.0
|
OG
|
G:SER154
|
4.9
|
194.3
|
1.0
|
HA
|
G:HIS152
|
4.9
|
243.9
|
1.0
|
CA
|
G:CYS151
|
5.0
|
197.8
|
1.0
|
H
|
G:HIS131
|
5.0
|
224.8
|
1.0
|
HD2
|
G:PRO166
|
5.0
|
203.7
|
1.0
|
C
|
G:HIS152
|
5.0
|
207.8
|
1.0
|
HD2
|
G:HIS131
|
5.0
|
233.6
|
1.0
|
|
Reference:
L.Esser,
D.Xia,
F.Zhou.
Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. To Be Published.
Page generated: Fri Aug 9 01:49:40 2024
|