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Iron in PDB 7tfs: Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens (pdb code 7tfs). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens, PDB code: 7tfs:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7tfs

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Iron binding site 1 out of 4 in the Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:61.9
occ:1.00
FE A:HEC301 0.0 61.9 1.0
NE2 A:HIS208 2.0 64.6 1.0
NE2 A:HIS55 2.0 65.5 1.0
NC A:HEC301 2.0 61.9 1.0
NA A:HEC301 2.1 61.9 1.0
ND A:HEC301 2.1 61.9 1.0
NB A:HEC301 2.1 61.9 1.0
CE1 A:HIS208 2.3 64.6 1.0
CD2 A:HIS55 2.7 65.5 1.0
C4C A:HEC301 3.0 61.9 1.0
C4A A:HEC301 3.1 61.9 1.0
C1D A:HEC301 3.1 61.9 1.0
C1C A:HEC301 3.1 61.9 1.0
C1B A:HEC301 3.1 61.9 1.0
C1A A:HEC301 3.1 61.9 1.0
C4D A:HEC301 3.1 61.9 1.0
C4B A:HEC301 3.2 61.9 1.0
CE1 A:HIS55 3.2 65.5 1.0
CD2 A:HIS208 3.3 64.6 1.0
CHD A:HEC301 3.4 61.9 1.0
CHB A:HEC301 3.4 61.9 1.0
CHA A:HEC301 3.5 61.9 1.0
CHC A:HEC301 3.5 61.9 1.0
ND1 A:HIS208 3.6 64.6 1.0
CG A:HIS55 4.0 65.5 1.0
CG A:HIS208 4.1 64.6 1.0
ND1 A:HIS55 4.1 65.5 1.0
C3C A:HEC301 4.3 61.9 1.0
C3A A:HEC301 4.3 61.9 1.0
C2C A:HEC301 4.3 61.9 1.0
C2A A:HEC301 4.3 61.9 1.0
C2D A:HEC301 4.3 61.9 1.0
C2B A:HEC301 4.3 61.9 1.0
C3D A:HEC301 4.3 61.9 1.0
C3B A:HEC301 4.4 61.9 1.0
CB A:CYS54 4.9 61.3 1.0

Iron binding site 2 out of 4 in 7tfs

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Iron binding site 2 out of 4 in the Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe302

b:58.7
occ:1.00
FE A:HEC302 0.0 58.7 1.0
NE2 A:HIS107 2.0 62.4 1.0
NB A:HEC302 2.1 58.7 1.0
NA A:HEC302 2.1 58.7 1.0
NC A:HEC302 2.1 58.7 1.0
ND A:HEC302 2.1 58.7 1.0
NE2 A:HIS31 2.1 66.7 1.0
CE1 A:HIS107 2.6 62.4 1.0
CE1 A:HIS31 2.8 66.7 1.0
C4D A:HEC302 3.1 58.7 1.0
C1A A:HEC302 3.1 58.7 1.0
C1D A:HEC302 3.1 58.7 1.0
C1B A:HEC302 3.1 58.7 1.0
C4B A:HEC302 3.1 58.7 1.0
C4A A:HEC302 3.1 58.7 1.0
C1C A:HEC302 3.1 58.7 1.0
C4C A:HEC302 3.1 58.7 1.0
CD2 A:HIS107 3.2 62.4 1.0
CD2 A:HIS31 3.2 66.7 1.0
CHA A:HEC302 3.4 58.7 1.0
CHD A:HEC302 3.4 58.7 1.0
CHB A:HEC302 3.4 58.7 1.0
CHC A:HEC302 3.5 58.7 1.0
ND1 A:HIS107 3.8 62.4 1.0
ND1 A:HIS31 4.0 66.7 1.0
CG A:HIS107 4.1 62.4 1.0
CG A:HIS31 4.2 66.7 1.0
C3A A:HEC302 4.3 58.7 1.0
C2B A:HEC302 4.3 58.7 1.0
C2A A:HEC302 4.3 58.7 1.0
C3B A:HEC302 4.3 58.7 1.0
C2C A:HEC302 4.3 58.7 1.0
C3C A:HEC302 4.3 58.7 1.0
C3D A:HEC302 4.3 58.7 1.0
C2D A:HEC302 4.3 58.7 1.0

Iron binding site 3 out of 4 in 7tfs

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Iron binding site 3 out of 4 in the Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe303

b:44.0
occ:1.00
FE A:HEC303 0.0 44.0 1.0
NB A:HEC303 2.0 44.0 1.0
NE2 A:HIS205 2.0 48.1 1.0
ND A:HEC303 2.1 44.0 1.0
NA A:HEC303 2.1 44.0 1.0
NC A:HEC303 2.1 44.0 1.0
CD2 A:HIS205 2.9 48.1 1.0
C1B A:HEC303 3.1 44.0 1.0
C4D A:HEC303 3.1 44.0 1.0
C1D A:HEC303 3.1 44.0 1.0
C4B A:HEC303 3.1 44.0 1.0
CE1 A:HIS205 3.1 48.1 1.0
C4A A:HEC303 3.1 44.0 1.0
C1C A:HEC303 3.1 44.0 1.0
C1A A:HEC303 3.1 44.0 1.0
C4C A:HEC303 3.1 44.0 1.0
CHA A:HEC303 3.4 44.0 1.0
CHD A:HEC303 3.4 44.0 1.0
CHB A:HEC303 3.4 44.0 1.0
CHC A:HEC303 3.4 44.0 1.0
CG A:HIS205 4.1 48.1 1.0
ND1 A:HIS205 4.1 48.1 1.0
C2B A:HEC303 4.3 44.0 1.0
C3B A:HEC303 4.3 44.0 1.0
C2D A:HEC303 4.3 44.0 1.0
C3D A:HEC303 4.3 44.0 1.0
C3A A:HEC303 4.3 44.0 1.0
C2C A:HEC303 4.3 44.0 1.0
C2A A:HEC303 4.3 44.0 1.0
C3C A:HEC303 4.3 44.0 1.0

Iron binding site 4 out of 4 in 7tfs

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Iron binding site 4 out of 4 in the Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe304

b:49.0
occ:1.00
FE A:HEC304 0.0 49.0 1.0
NA A:HEC304 2.0 49.0 1.0
ND A:HEC304 2.1 49.0 1.0
NE2 A:HIS149 2.1 39.3 1.0
NB A:HEC304 2.1 49.0 1.0
NC A:HEC304 2.1 49.0 1.0
NE2 A:HIS230 2.1 56.2 1.0
CE1 A:HIS149 2.7 39.3 1.0
CE1 A:HIS230 2.8 56.2 1.0
C1A A:HEC304 3.0 49.0 1.0
C4D A:HEC304 3.1 49.0 1.0
C4A A:HEC304 3.1 49.0 1.0
C1D A:HEC304 3.1 49.0 1.0
C1B A:HEC304 3.1 49.0 1.0
C4C A:HEC304 3.1 49.0 1.0
C4B A:HEC304 3.1 49.0 1.0
C1C A:HEC304 3.1 49.0 1.0
CD2 A:HIS230 3.1 56.2 1.0
CD2 A:HIS149 3.3 39.3 1.0
CHA A:HEC304 3.4 49.0 1.0
CHB A:HEC304 3.4 49.0 1.0
CHD A:HEC304 3.4 49.0 1.0
CHC A:HEC304 3.5 49.0 1.0
ND1 A:HIS230 3.9 56.2 1.0
ND1 A:HIS149 4.0 39.3 1.0
CG A:HIS230 4.1 56.2 1.0
CG A:HIS149 4.2 39.3 1.0
C3A A:HEC304 4.3 49.0 1.0
C2A A:HEC304 4.3 49.0 1.0
C3D A:HEC304 4.3 49.0 1.0
C2D A:HEC304 4.3 49.0 1.0
C2B A:HEC304 4.3 49.0 1.0
C3B A:HEC304 4.3 49.0 1.0
C2C A:HEC304 4.3 49.0 1.0
C3C A:HEC304 4.3 49.0 1.0

Reference:

F.Wang, K.Mustafa, V.Suciu, K.Joshi, C.H.Chan, S.Choi, Z.Su, D.Si, A.I.Hochbaum, E.H.Egelman, D.R.Bond. Cryo-Em Structure of An Extracellular Geobacter Omce Cytochrome Filament Reveals Tetrahaem Packing. Nat Microbiol V. 7 1291 2022.
ISSN: ESSN 2058-5276
PubMed: 35798889
DOI: 10.1038/S41564-022-01159-Z
Page generated: Fri Aug 9 01:49:38 2024

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