Iron in PDB 7tfs: Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens

The binding sites of Iron atom in the Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens (pdb code 7tfs). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens, PDB code: 7tfs:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:61.9 occ:1.00 FE A:HEC301 0.0 61.9 1.0 NE2 A:HIS208 2.0 64.6 1.0 NE2 A:HIS55 2.0 65.5 1.0 NC A:HEC301 2.0 61.9 1.0 NA A:HEC301 2.1 61.9 1.0 ND A:HEC301 2.1 61.9 1.0 NB A:HEC301 2.1 61.9 1.0 CE1 A:HIS208 2.3 64.6 1.0 CD2 A:HIS55 2.7 65.5 1.0 C4C A:HEC301 3.0 61.9 1.0 C4A A:HEC301 3.1 61.9 1.0 C1D A:HEC301 3.1 61.9 1.0 C1C A:HEC301 3.1 61.9 1.0 C1B A:HEC301 3.1 61.9 1.0 C1A A:HEC301 3.1 61.9 1.0 C4D A:HEC301 3.1 61.9 1.0 C4B A:HEC301 3.2 61.9 1.0 CE1 A:HIS55 3.2 65.5 1.0 CD2 A:HIS208 3.3 64.6 1.0 CHD A:HEC301 3.4 61.9 1.0 CHB A:HEC301 3.4 61.9 1.0 CHA A:HEC301 3.5 61.9 1.0 CHC A:HEC301 3.5 61.9 1.0 ND1 A:HIS208 3.6 64.6 1.0 CG A:HIS55 4.0 65.5 1.0 CG A:HIS208 4.1 64.6 1.0 ND1 A:HIS55 4.1 65.5 1.0 C3C A:HEC301 4.3 61.9 1.0 C3A A:HEC301 4.3 61.9 1.0 C2C A:HEC301 4.3 61.9 1.0 C2A A:HEC301 4.3 61.9 1.0 C2D A:HEC301 4.3 61.9 1.0 C2B A:HEC301 4.3 61.9 1.0 C3D A:HEC301 4.3 61.9 1.0 C3B A:HEC301 4.4 61.9 1.0 CB A:CYS54 4.9 61.3 1.0

Iron binding site 2 out of 4 in the Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe302 b:58.7 occ:1.00 FE A:HEC302 0.0 58.7 1.0 NE2 A:HIS107 2.0 62.4 1.0 NB A:HEC302 2.1 58.7 1.0 NA A:HEC302 2.1 58.7 1.0 NC A:HEC302 2.1 58.7 1.0 ND A:HEC302 2.1 58.7 1.0 NE2 A:HIS31 2.1 66.7 1.0 CE1 A:HIS107 2.6 62.4 1.0 CE1 A:HIS31 2.8 66.7 1.0 C4D A:HEC302 3.1 58.7 1.0 C1A A:HEC302 3.1 58.7 1.0 C1D A:HEC302 3.1 58.7 1.0 C1B A:HEC302 3.1 58.7 1.0 C4B A:HEC302 3.1 58.7 1.0 C4A A:HEC302 3.1 58.7 1.0 C1C A:HEC302 3.1 58.7 1.0 C4C A:HEC302 3.1 58.7 1.0 CD2 A:HIS107 3.2 62.4 1.0 CD2 A:HIS31 3.2 66.7 1.0 CHA A:HEC302 3.4 58.7 1.0 CHD A:HEC302 3.4 58.7 1.0 CHB A:HEC302 3.4 58.7 1.0 CHC A:HEC302 3.5 58.7 1.0 ND1 A:HIS107 3.8 62.4 1.0 ND1 A:HIS31 4.0 66.7 1.0 CG A:HIS107 4.1 62.4 1.0 CG A:HIS31 4.2 66.7 1.0 C3A A:HEC302 4.3 58.7 1.0 C2B A:HEC302 4.3 58.7 1.0 C2A A:HEC302 4.3 58.7 1.0 C3B A:HEC302 4.3 58.7 1.0 C2C A:HEC302 4.3 58.7 1.0 C3C A:HEC302 4.3 58.7 1.0 C3D A:HEC302 4.3 58.7 1.0 C2D A:HEC302 4.3 58.7 1.0

Iron binding site 3 out of 4 in the Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe303 b:44.0 occ:1.00 FE A:HEC303 0.0 44.0 1.0 NB A:HEC303 2.0 44.0 1.0 NE2 A:HIS205 2.0 48.1 1.0 ND A:HEC303 2.1 44.0 1.0 NA A:HEC303 2.1 44.0 1.0 NC A:HEC303 2.1 44.0 1.0 CD2 A:HIS205 2.9 48.1 1.0 C1B A:HEC303 3.1 44.0 1.0 C4D A:HEC303 3.1 44.0 1.0 C1D A:HEC303 3.1 44.0 1.0 C4B A:HEC303 3.1 44.0 1.0 CE1 A:HIS205 3.1 48.1 1.0 C4A A:HEC303 3.1 44.0 1.0 C1C A:HEC303 3.1 44.0 1.0 C1A A:HEC303 3.1 44.0 1.0 C4C A:HEC303 3.1 44.0 1.0 CHA A:HEC303 3.4 44.0 1.0 CHD A:HEC303 3.4 44.0 1.0 CHB A:HEC303 3.4 44.0 1.0 CHC A:HEC303 3.4 44.0 1.0 CG A:HIS205 4.1 48.1 1.0 ND1 A:HIS205 4.1 48.1 1.0 C2B A:HEC303 4.3 44.0 1.0 C3B A:HEC303 4.3 44.0 1.0 C2D A:HEC303 4.3 44.0 1.0 C3D A:HEC303 4.3 44.0 1.0 C3A A:HEC303 4.3 44.0 1.0 C2C A:HEC303 4.3 44.0 1.0 C2A A:HEC303 4.3 44.0 1.0 C3C A:HEC303 4.3 44.0 1.0

Iron binding site 4 out of 4 in the Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em of the Omce Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe304 b:49.0 occ:1.00 FE A:HEC304 0.0 49.0 1.0 NA A:HEC304 2.0 49.0 1.0 ND A:HEC304 2.1 49.0 1.0 NE2 A:HIS149 2.1 39.3 1.0 NB A:HEC304 2.1 49.0 1.0 NC A:HEC304 2.1 49.0 1.0 NE2 A:HIS230 2.1 56.2 1.0 CE1 A:HIS149 2.7 39.3 1.0 CE1 A:HIS230 2.8 56.2 1.0 C1A A:HEC304 3.0 49.0 1.0 C4D A:HEC304 3.1 49.0 1.0 C4A A:HEC304 3.1 49.0 1.0 C1D A:HEC304 3.1 49.0 1.0 C1B A:HEC304 3.1 49.0 1.0 C4C A:HEC304 3.1 49.0 1.0 C4B A:HEC304 3.1 49.0 1.0 C1C A:HEC304 3.1 49.0 1.0 CD2 A:HIS230 3.1 56.2 1.0 CD2 A:HIS149 3.3 39.3 1.0 CHA A:HEC304 3.4 49.0 1.0 CHB A:HEC304 3.4 49.0 1.0 CHD A:HEC304 3.4 49.0 1.0 CHC A:HEC304 3.5 49.0 1.0 ND1 A:HIS230 3.9 56.2 1.0 ND1 A:HIS149 4.0 39.3 1.0 CG A:HIS230 4.1 56.2 1.0 CG A:HIS149 4.2 39.3 1.0 C3A A:HEC304 4.3 49.0 1.0 C2A A:HEC304 4.3 49.0 1.0 C3D A:HEC304 4.3 49.0 1.0 C2D A:HEC304 4.3 49.0 1.0 C2B A:HEC304 4.3 49.0 1.0 C3B A:HEC304 4.3 49.0 1.0 C2C A:HEC304 4.3 49.0 1.0 C3C A:HEC304 4.3 49.0 1.0

F.Wang, K.Mustafa, V.Suciu, K.Joshi, C.H.Chan, S.Choi, Z.Su, D.Si, A.I.Hochbaum, E.H.Egelman, D.R.Bond. Cryo-Em Structure of An Extracellular Geobacter Omce Cytochrome Filament Reveals Tetrahaem Packing. Nat Microbiol V. 7 1291 2022.
ISSN: ESSN 2058-5276
PubMed: 35798889
DOI: 10.1038/S41564-022-01159-Z