Iron in PDB 7tlo: X-Ray Crystal Structure of Substrate Free Cytochrome P450 CYP142A3 From Mycobacterium Marinum

The structure of X-Ray Crystal Structure of Substrate Free Cytochrome P450 CYP142A3 From Mycobacterium Marinum, PDB code: 7tlo was solved by A.Ghith, J.B.Bruning, S.G.Bell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.31 / 1.55
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	58.406, 101.554, 70.013, 90, 110.32, 90
R / Rfree (%)	17.8 / 21.5

The binding sites of Iron atom in the X-Ray Crystal Structure of Substrate Free Cytochrome P450 CYP142A3 From Mycobacterium Marinum (pdb code 7tlo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the X-Ray Crystal Structure of Substrate Free Cytochrome P450 CYP142A3 From Mycobacterium Marinum, PDB code: 7tlo:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the X-Ray Crystal Structure of Substrate Free Cytochrome P450 CYP142A3 From Mycobacterium Marinum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Crystal Structure of Substrate Free Cytochrome P450 CYP142A3 From Mycobacterium Marinum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:14.6 occ:1.00 FE A:HEM501 0.0 14.6 1.0 ND A:HEM501 1.9 13.8 1.0 NA A:HEM501 2.0 12.2 1.0 NC A:HEM501 2.1 11.5 1.0 NB A:HEM501 2.1 11.7 1.0 O A:HOH685 2.3 20.2 1.0 SG A:CYS343 2.3 15.2 1.0 C1D A:HEM501 2.9 14.8 1.0 C4D A:HEM501 2.9 13.5 1.0 C1A A:HEM501 3.0 13.4 1.0 C4C A:HEM501 3.0 13.9 1.0 C4A A:HEM501 3.0 14.4 1.0 C1B A:HEM501 3.1 11.6 1.0 C4B A:HEM501 3.1 13.2 1.0 C1C A:HEM501 3.1 12.5 1.0 CHA A:HEM501 3.4 13.3 1.0 CHD A:HEM501 3.4 13.4 1.0 CB A:CYS343 3.4 15.2 1.0 CHB A:HEM501 3.5 12.1 1.0 CHC A:HEM501 3.5 13.3 1.0 O A:HOH1011 4.0 31.6 1.0 CA A:CYS343 4.1 14.7 1.0 C2D A:HEM501 4.1 13.2 1.0 O A:GLY233 4.1 15.8 1.0 C3D A:HEM501 4.2 15.6 1.0 C2A A:HEM501 4.2 13.5 1.0 C3A A:HEM501 4.2 13.6 1.0 C3C A:HEM501 4.2 13.7 1.0 C2C A:HEM501 4.3 14.4 1.0 C2B A:HEM501 4.3 12.7 1.0 C3B A:HEM501 4.3 13.2 1.0 N A:GLY345 4.6 15.0 1.0 C A:CYS343 4.7 14.4 1.0 N A:MET344 4.7 16.2 1.0 C A:GLY233 4.8 14.5 1.0

Iron binding site 2 out of 2 in the X-Ray Crystal Structure of Substrate Free Cytochrome P450 CYP142A3 From Mycobacterium Marinum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of X-Ray Crystal Structure of Substrate Free Cytochrome P450 CYP142A3 From Mycobacterium Marinum within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:16.8 occ:1.00 FE B:HEM501 0.0 16.8 1.0 ND B:HEM501 1.9 15.7 1.0 NA B:HEM501 2.0 15.2 1.0 NC B:HEM501 2.1 14.9 1.0 NB B:HEM501 2.1 17.0 1.0 O B:HOH702 2.3 23.0 1.0 SG B:CYS343 2.3 16.9 1.0 C4D B:HEM501 2.9 14.9 1.0 C1D B:HEM501 2.9 17.1 1.0 C1A B:HEM501 3.0 15.2 1.0 C4C B:HEM501 3.0 17.9 1.0 C4A B:HEM501 3.0 15.8 1.0 C4B B:HEM501 3.0 13.1 1.0 C1B B:HEM501 3.1 16.3 1.0 C1C B:HEM501 3.1 14.6 1.0 CB B:CYS343 3.4 16.6 1.0 CHA B:HEM501 3.4 16.5 1.0 CHD B:HEM501 3.4 16.0 1.0 CHB B:HEM501 3.4 17.8 1.0 CHC B:HEM501 3.5 15.3 1.0 CA B:CYS343 4.0 15.0 1.0 O B:GLY233 4.1 20.6 1.0 C3D B:HEM501 4.2 17.4 1.0 C2D B:HEM501 4.2 16.2 1.0 C2A B:HEM501 4.2 17.3 1.0 C3A B:HEM501 4.2 15.8 1.0 C3C B:HEM501 4.2 15.9 1.0 C2C B:HEM501 4.3 17.6 1.0 O B:HOH934 4.3 37.2 1.0 C2B B:HEM501 4.3 16.1 1.0 C3B B:HEM501 4.3 17.0 1.0 C B:CYS343 4.7 17.7 1.0 N B:GLY345 4.7 16.9 1.0 N B:MET344 4.8 14.4 1.0 C B:GLY233 4.8 20.9 1.0

A.Ghith, D.Z.Doherty, J.B.Bruning, R.A.Russell, J.J.De Voss, S.G.Bell. The Structures of the Steroid Binding CYP142 Cytochrome P450 Enzymes From Mycobacterium Ulcerans and Mycobacterium Marinum. Acs Infect Dis. V. 8 1606 2022.
ISSN: ESSN 2373-8227
PubMed: 35881654
DOI: 10.1021/ACSINFECDIS.2C00215