Iron in PDB 7ts1: Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine
Enzymatic activity of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine
All present enzymatic activity of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine:
1.14.13.39;
Protein crystallography data
The structure of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine, PDB code: 7ts1
was solved by
H.Li,
T.L.Poulos,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.27 /
2.06
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
51.548,
162.872,
117.133,
90,
90,
90
|
R / Rfree (%)
|
20.2 /
25.7
|
Other elements in 7ts1:
The structure of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine
(pdb code 7ts1). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine, PDB code: 7ts1:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 7ts1
Go back to
Iron Binding Sites List in 7ts1
Iron binding site 1 out
of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe801
b:34.8
occ:1.00
|
FE
|
A:HEM801
|
0.0
|
34.8
|
1.0
|
NB
|
A:HEM801
|
2.0
|
31.1
|
1.0
|
ND
|
A:HEM801
|
2.0
|
31.4
|
1.0
|
NA
|
A:HEM801
|
2.1
|
39.3
|
1.0
|
NC
|
A:HEM801
|
2.1
|
29.3
|
1.0
|
SG
|
A:CYS420
|
2.3
|
38.5
|
1.0
|
C4B
|
A:HEM801
|
3.0
|
41.2
|
1.0
|
C1B
|
A:HEM801
|
3.0
|
35.4
|
1.0
|
C4D
|
A:HEM801
|
3.1
|
38.1
|
1.0
|
C1A
|
A:HEM801
|
3.1
|
35.6
|
1.0
|
C1C
|
A:HEM801
|
3.1
|
25.2
|
1.0
|
C4A
|
A:HEM801
|
3.1
|
41.1
|
1.0
|
C1D
|
A:HEM801
|
3.1
|
38.9
|
1.0
|
C4C
|
A:HEM801
|
3.1
|
30.8
|
1.0
|
CB
|
A:CYS420
|
3.3
|
28.4
|
1.0
|
CHC
|
A:HEM801
|
3.4
|
31.6
|
1.0
|
CHB
|
A:HEM801
|
3.4
|
41.4
|
1.0
|
CHA
|
A:HEM801
|
3.4
|
34.2
|
1.0
|
CHD
|
A:HEM801
|
3.5
|
30.6
|
1.0
|
C04
|
A:K8O803
|
4.0
|
37.4
|
1.0
|
CA
|
A:CYS420
|
4.1
|
33.2
|
1.0
|
C03
|
A:K8O803
|
4.2
|
40.2
|
1.0
|
C3B
|
A:HEM801
|
4.2
|
39.0
|
1.0
|
C2B
|
A:HEM801
|
4.2
|
33.0
|
1.0
|
C05
|
A:K8O803
|
4.2
|
37.0
|
1.0
|
C2A
|
A:HEM801
|
4.3
|
42.7
|
1.0
|
C3D
|
A:HEM801
|
4.3
|
37.5
|
1.0
|
C3A
|
A:HEM801
|
4.3
|
41.0
|
1.0
|
C2D
|
A:HEM801
|
4.3
|
34.6
|
1.0
|
C2C
|
A:HEM801
|
4.3
|
34.7
|
1.0
|
C3C
|
A:HEM801
|
4.4
|
34.4
|
1.0
|
NE1
|
A:TRP414
|
4.4
|
36.7
|
1.0
|
C07
|
A:K8O803
|
4.4
|
37.7
|
1.0
|
C02
|
A:K8O803
|
4.5
|
37.9
|
1.0
|
C06
|
A:K8O803
|
4.6
|
50.4
|
1.0
|
N01
|
A:K8O803
|
4.7
|
40.5
|
1.0
|
N
|
A:GLY422
|
4.7
|
44.8
|
1.0
|
C
|
A:CYS420
|
4.8
|
26.6
|
1.0
|
N
|
A:VAL421
|
4.9
|
36.2
|
1.0
|
|
Iron binding site 2 out
of 4 in 7ts1
Go back to
Iron Binding Sites List in 7ts1
Iron binding site 2 out
of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe802
b:35.0
occ:1.00
|
FE
|
B:HEM802
|
0.0
|
35.0
|
1.0
|
ND
|
B:HEM802
|
2.0
|
41.6
|
1.0
|
NB
|
B:HEM802
|
2.0
|
28.4
|
1.0
|
NA
|
B:HEM802
|
2.1
|
35.2
|
1.0
|
NC
|
B:HEM802
|
2.1
|
28.8
|
1.0
|
SG
|
B:CYS420
|
2.3
|
37.5
|
1.0
|
C4D
|
B:HEM802
|
3.0
|
38.5
|
1.0
|
C1A
|
B:HEM802
|
3.0
|
30.9
|
1.0
|
C4B
|
B:HEM802
|
3.0
|
31.3
|
1.0
|
C1D
|
B:HEM802
|
3.1
|
41.2
|
1.0
|
C1C
|
B:HEM802
|
3.1
|
28.4
|
1.0
|
C1B
|
B:HEM802
|
3.1
|
34.4
|
1.0
|
C4C
|
B:HEM802
|
3.1
|
32.2
|
1.0
|
C4A
|
B:HEM802
|
3.1
|
34.2
|
1.0
|
CB
|
B:CYS420
|
3.3
|
29.8
|
1.0
|
CHA
|
B:HEM802
|
3.4
|
33.7
|
1.0
|
CHC
|
B:HEM802
|
3.4
|
33.8
|
1.0
|
CHD
|
B:HEM802
|
3.4
|
30.3
|
1.0
|
CHB
|
B:HEM802
|
3.5
|
38.2
|
1.0
|
C04
|
B:K8O804
|
3.9
|
39.3
|
1.0
|
C05
|
B:K8O804
|
4.0
|
35.2
|
1.0
|
CA
|
B:CYS420
|
4.1
|
32.2
|
1.0
|
C03
|
B:K8O804
|
4.1
|
35.1
|
1.0
|
C3D
|
B:HEM802
|
4.2
|
40.4
|
1.0
|
C2D
|
B:HEM802
|
4.2
|
35.3
|
1.0
|
C2A
|
B:HEM802
|
4.3
|
36.4
|
1.0
|
C3B
|
B:HEM802
|
4.3
|
38.9
|
1.0
|
NE1
|
B:TRP414
|
4.3
|
29.9
|
1.0
|
C3A
|
B:HEM802
|
4.3
|
34.0
|
1.0
|
C2B
|
B:HEM802
|
4.3
|
32.5
|
1.0
|
C2C
|
B:HEM802
|
4.3
|
30.7
|
1.0
|
C3C
|
B:HEM802
|
4.3
|
36.2
|
1.0
|
C06
|
B:K8O804
|
4.3
|
42.2
|
1.0
|
C07
|
B:K8O804
|
4.3
|
47.5
|
1.0
|
C02
|
B:K8O804
|
4.4
|
35.8
|
1.0
|
N01
|
B:K8O804
|
4.5
|
40.7
|
1.0
|
N
|
B:GLY422
|
4.8
|
38.4
|
1.0
|
C
|
B:CYS420
|
4.8
|
30.4
|
1.0
|
CD1
|
B:TRP414
|
4.9
|
31.2
|
1.0
|
N
|
B:VAL421
|
5.0
|
36.6
|
1.0
|
C08
|
B:K8O804
|
5.0
|
49.6
|
1.0
|
|
Iron binding site 3 out
of 4 in 7ts1
Go back to
Iron Binding Sites List in 7ts1
Iron binding site 3 out
of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe802
b:34.9
occ:1.00
|
FE
|
C:HEM802
|
0.0
|
34.9
|
1.0
|
ND
|
C:HEM802
|
2.1
|
27.8
|
1.0
|
NB
|
C:HEM802
|
2.1
|
30.3
|
1.0
|
NC
|
C:HEM802
|
2.1
|
31.4
|
1.0
|
NA
|
C:HEM802
|
2.1
|
39.6
|
1.0
|
SG
|
C:CYS420
|
2.4
|
39.1
|
1.0
|
C1C
|
C:HEM802
|
3.1
|
32.6
|
1.0
|
C4B
|
C:HEM802
|
3.1
|
36.6
|
1.0
|
C1D
|
C:HEM802
|
3.1
|
33.0
|
1.0
|
C4C
|
C:HEM802
|
3.1
|
34.0
|
1.0
|
C4D
|
C:HEM802
|
3.1
|
37.1
|
1.0
|
C1B
|
C:HEM802
|
3.1
|
35.9
|
1.0
|
C4A
|
C:HEM802
|
3.1
|
39.9
|
1.0
|
C1A
|
C:HEM802
|
3.1
|
35.2
|
1.0
|
CB
|
C:CYS420
|
3.4
|
35.5
|
1.0
|
CHC
|
C:HEM802
|
3.4
|
32.8
|
1.0
|
CHD
|
C:HEM802
|
3.4
|
32.8
|
1.0
|
CHB
|
C:HEM802
|
3.4
|
42.3
|
1.0
|
CHA
|
C:HEM802
|
3.5
|
35.6
|
1.0
|
C04
|
C:K8O804
|
4.0
|
40.3
|
1.0
|
CA
|
C:CYS420
|
4.1
|
37.2
|
1.0
|
C05
|
C:K8O804
|
4.1
|
39.3
|
1.0
|
C03
|
C:K8O804
|
4.1
|
39.0
|
1.0
|
C2D
|
C:HEM802
|
4.3
|
35.7
|
1.0
|
C3D
|
C:HEM802
|
4.3
|
34.4
|
1.0
|
C2C
|
C:HEM802
|
4.3
|
40.9
|
1.0
|
C3B
|
C:HEM802
|
4.3
|
40.0
|
1.0
|
C3C
|
C:HEM802
|
4.3
|
34.9
|
1.0
|
C2B
|
C:HEM802
|
4.3
|
35.2
|
1.0
|
C3A
|
C:HEM802
|
4.3
|
43.0
|
1.0
|
C2A
|
C:HEM802
|
4.3
|
41.8
|
1.0
|
NE1
|
C:TRP414
|
4.4
|
35.3
|
1.0
|
C06
|
C:K8O804
|
4.4
|
49.8
|
1.0
|
C02
|
C:K8O804
|
4.4
|
40.3
|
1.0
|
C07
|
C:K8O804
|
4.4
|
47.4
|
1.0
|
N01
|
C:K8O804
|
4.5
|
46.8
|
1.0
|
N
|
C:GLY422
|
4.8
|
33.0
|
1.0
|
C
|
C:CYS420
|
4.8
|
29.3
|
1.0
|
N
|
C:VAL421
|
4.9
|
32.5
|
1.0
|
|
Iron binding site 4 out
of 4 in 7ts1
Go back to
Iron Binding Sites List in 7ts1
Iron binding site 4 out
of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with 6-(3-(4,4-Difluoropiperidin-1-Yl)Prop-1- Yn-1-Yl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe801
b:34.6
occ:1.00
|
FE
|
D:HEM801
|
0.0
|
34.6
|
1.0
|
ND
|
D:HEM801
|
2.0
|
25.1
|
1.0
|
NB
|
D:HEM801
|
2.0
|
24.6
|
1.0
|
NC
|
D:HEM801
|
2.1
|
26.8
|
1.0
|
NA
|
D:HEM801
|
2.1
|
36.9
|
1.0
|
SG
|
D:CYS420
|
2.3
|
31.9
|
1.0
|
C4D
|
D:HEM801
|
3.0
|
35.1
|
1.0
|
C1D
|
D:HEM801
|
3.0
|
32.4
|
1.0
|
C1B
|
D:HEM801
|
3.1
|
35.3
|
1.0
|
C4B
|
D:HEM801
|
3.1
|
31.3
|
1.0
|
C1A
|
D:HEM801
|
3.1
|
35.2
|
1.0
|
C4C
|
D:HEM801
|
3.1
|
26.0
|
1.0
|
C1C
|
D:HEM801
|
3.1
|
25.5
|
1.0
|
C4A
|
D:HEM801
|
3.1
|
32.7
|
1.0
|
CB
|
D:CYS420
|
3.3
|
30.0
|
1.0
|
CHD
|
D:HEM801
|
3.4
|
27.8
|
1.0
|
CHA
|
D:HEM801
|
3.4
|
32.4
|
1.0
|
CHC
|
D:HEM801
|
3.4
|
26.7
|
1.0
|
CHB
|
D:HEM801
|
3.4
|
31.5
|
1.0
|
C04
|
D:K8O803
|
4.0
|
36.5
|
1.0
|
CA
|
D:CYS420
|
4.0
|
31.4
|
1.0
|
C05
|
D:K8O803
|
4.1
|
30.7
|
1.0
|
C03
|
D:K8O803
|
4.1
|
37.7
|
1.0
|
C3D
|
D:HEM801
|
4.2
|
30.7
|
1.0
|
C2D
|
D:HEM801
|
4.2
|
25.2
|
1.0
|
C2B
|
D:HEM801
|
4.3
|
26.8
|
1.0
|
C3B
|
D:HEM801
|
4.3
|
27.3
|
1.0
|
C2A
|
D:HEM801
|
4.3
|
42.6
|
1.0
|
C3A
|
D:HEM801
|
4.3
|
37.4
|
1.0
|
C2C
|
D:HEM801
|
4.3
|
26.6
|
1.0
|
C3C
|
D:HEM801
|
4.3
|
37.1
|
1.0
|
NE1
|
D:TRP414
|
4.3
|
33.2
|
1.0
|
C07
|
D:K8O803
|
4.4
|
42.3
|
1.0
|
C06
|
D:K8O803
|
4.4
|
34.5
|
1.0
|
C02
|
D:K8O803
|
4.5
|
32.5
|
1.0
|
N01
|
D:K8O803
|
4.6
|
30.2
|
1.0
|
N
|
D:GLY422
|
4.7
|
33.0
|
1.0
|
C
|
D:CYS420
|
4.8
|
33.1
|
1.0
|
N
|
D:VAL421
|
5.0
|
30.8
|
1.0
|
CD1
|
D:TRP414
|
5.0
|
33.8
|
1.0
|
|
Reference:
D.Vasu,
H.Li,
C.D.Hardy,
T.L.Poulos,
R.B.Silverman.
2-Aminopyridines with A Shortened Amino Sidechain As Potent, Selective, and Highly Permeable Human Neuronal Nitric Oxide Synthase Inhibitors. Bioorg.Med.Chem. V. 69 16878 2022.
ISSN: ESSN 1464-3391
PubMed: 35772285
DOI: 10.1016/J.BMC.2022.116878
Page generated: Fri Aug 9 02:19:29 2024
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