Iron in PDB 7tz6: Structure of Mitochondrial BC1 in Complex with Ck-2-68
Enzymatic activity of Structure of Mitochondrial BC1 in Complex with Ck-2-68
All present enzymatic activity of Structure of Mitochondrial BC1 in Complex with Ck-2-68:
1.10.2.2;
Other elements in 7tz6:
The structure of Structure of Mitochondrial BC1 in Complex with Ck-2-68 also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Structure of Mitochondrial BC1 in Complex with Ck-2-68
(pdb code 7tz6). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Structure of Mitochondrial BC1 in Complex with Ck-2-68, PDB code: 7tz6:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 7tz6
Go back to
Iron Binding Sites List in 7tz6
Iron binding site 1 out
of 10 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1001
b:74.2
occ:1.00
|
FE
|
C:HEM1001
|
0.0
|
74.2
|
1.0
|
|
ND
|
C:HEM1001
|
2.0
|
48.5
|
1.0
|
|
NA
|
C:HEM1001
|
2.0
|
62.3
|
1.0
|
|
NC
|
C:HEM1001
|
2.0
|
50.9
|
1.0
|
|
NB
|
C:HEM1001
|
2.0
|
53.7
|
1.0
|
|
NE2
|
C:HIS182
|
2.1
|
66.7
|
1.0
|
|
NE2
|
C:HIS83
|
2.1
|
62.8
|
1.0
|
|
CE1
|
C:HIS182
|
2.8
|
62.2
|
1.0
|
|
CE1
|
C:HIS83
|
2.8
|
52.2
|
1.0
|
|
HE1
|
C:HIS182
|
2.9
|
62.9
|
1.0
|
|
HE1
|
C:HIS83
|
2.9
|
63.0
|
1.0
|
|
C1D
|
C:HEM1001
|
3.0
|
54.2
|
1.0
|
|
C4D
|
C:HEM1001
|
3.0
|
48.7
|
1.0
|
|
C1A
|
C:HEM1001
|
3.0
|
46.2
|
1.0
|
|
C4C
|
C:HEM1001
|
3.0
|
49.5
|
1.0
|
|
C4B
|
C:HEM1001
|
3.0
|
54.5
|
1.0
|
|
C4A
|
C:HEM1001
|
3.1
|
64.5
|
1.0
|
|
C1C
|
C:HEM1001
|
3.1
|
51.9
|
1.0
|
|
C1B
|
C:HEM1001
|
3.1
|
44.3
|
1.0
|
|
CD2
|
C:HIS182
|
3.2
|
59.7
|
1.0
|
|
CD2
|
C:HIS83
|
3.2
|
62.5
|
1.0
|
|
CHD
|
C:HEM1001
|
3.4
|
53.3
|
1.0
|
|
CHA
|
C:HEM1001
|
3.4
|
46.2
|
1.0
|
|
CHC
|
C:HEM1001
|
3.4
|
51.2
|
1.0
|
|
CHB
|
C:HEM1001
|
3.4
|
52.4
|
1.0
|
|
HD2
|
C:HIS83
|
3.5
|
63.0
|
1.0
|
|
HD2
|
C:HIS182
|
3.6
|
62.7
|
1.0
|
|
ND1
|
C:HIS182
|
4.0
|
55.1
|
1.0
|
|
ND1
|
C:HIS83
|
4.0
|
58.9
|
1.0
|
|
C2D
|
C:HEM1001
|
4.2
|
50.0
|
1.0
|
|
CG
|
C:HIS182
|
4.2
|
51.0
|
1.0
|
|
C3D
|
C:HEM1001
|
4.3
|
49.8
|
1.0
|
|
C2A
|
C:HEM1001
|
4.3
|
51.9
|
1.0
|
|
CG
|
C:HIS83
|
4.3
|
64.6
|
1.0
|
|
C3A
|
C:HEM1001
|
4.3
|
61.3
|
1.0
|
|
HA3
|
C:GLY130
|
4.3
|
62.6
|
1.0
|
|
C3B
|
C:HEM1001
|
4.3
|
53.8
|
1.0
|
|
C3C
|
C:HEM1001
|
4.3
|
53.1
|
1.0
|
|
C2C
|
C:HEM1001
|
4.3
|
49.7
|
1.0
|
|
C2B
|
C:HEM1001
|
4.3
|
55.3
|
1.0
|
|
HHD
|
C:HEM1001
|
4.4
|
59.4
|
1.0
|
|
HHC
|
C:HEM1001
|
4.4
|
59.1
|
1.0
|
|
HHA
|
C:HEM1001
|
4.4
|
59.2
|
1.0
|
|
HHB
|
C:HEM1001
|
4.4
|
59.5
|
1.0
|
|
HA3
|
C:GLY48
|
4.6
|
66.1
|
1.0
|
|
HA2
|
C:GLY130
|
4.7
|
62.1
|
1.0
|
|
HD1
|
C:HIS182
|
4.8
|
63.1
|
1.0
|
|
HD1
|
C:HIS83
|
4.8
|
64.4
|
1.0
|
|
CA
|
C:GLY130
|
5.0
|
49.0
|
1.0
|
|
Iron binding site 2 out
of 10 in 7tz6
Go back to
Iron Binding Sites List in 7tz6
Iron binding site 2 out
of 10 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1002
b:104.4
occ:1.00
|
FE
|
C:HEM1002
|
0.0
|
104.4
|
1.0
|
|
NA
|
C:HEM1002
|
2.0
|
63.1
|
1.0
|
|
ND
|
C:HEM1002
|
2.0
|
77.8
|
1.0
|
|
NC
|
C:HEM1002
|
2.0
|
59.0
|
1.0
|
|
NB
|
C:HEM1002
|
2.0
|
76.6
|
1.0
|
|
NE2
|
C:HIS196
|
2.1
|
65.5
|
1.0
|
|
NE2
|
C:HIS97
|
2.1
|
53.7
|
1.0
|
|
CD2
|
C:HIS97
|
3.0
|
64.6
|
1.0
|
|
CE1
|
C:HIS196
|
3.0
|
67.3
|
1.0
|
|
C1A
|
C:HEM1002
|
3.0
|
59.9
|
1.0
|
|
C4C
|
C:HEM1002
|
3.0
|
68.3
|
1.0
|
|
HD2
|
C:HIS97
|
3.0
|
64.1
|
1.0
|
|
C4D
|
C:HEM1002
|
3.0
|
63.2
|
1.0
|
|
C1D
|
C:HEM1002
|
3.0
|
73.0
|
1.0
|
|
C1C
|
C:HEM1002
|
3.0
|
59.0
|
1.0
|
|
C4A
|
C:HEM1002
|
3.1
|
73.4
|
1.0
|
|
C4B
|
C:HEM1002
|
3.1
|
68.3
|
1.0
|
|
C1B
|
C:HEM1002
|
3.1
|
66.0
|
1.0
|
|
CD2
|
C:HIS196
|
3.1
|
69.0
|
1.0
|
|
HE1
|
C:HIS196
|
3.1
|
71.6
|
1.0
|
|
CE1
|
C:HIS97
|
3.2
|
47.3
|
1.0
|
|
HD2
|
C:HIS196
|
3.3
|
72.0
|
1.0
|
|
CHA
|
C:HEM1002
|
3.4
|
63.7
|
1.0
|
|
CHD
|
C:HEM1002
|
3.4
|
79.2
|
1.0
|
|
CHC
|
C:HEM1002
|
3.4
|
67.5
|
1.0
|
|
CHB
|
C:HEM1002
|
3.4
|
68.2
|
1.0
|
|
HE1
|
C:HIS97
|
3.5
|
62.4
|
1.0
|
|
ND1
|
C:HIS196
|
4.1
|
71.4
|
1.0
|
|
CG
|
C:HIS97
|
4.2
|
63.6
|
1.0
|
|
CG
|
C:HIS196
|
4.2
|
72.3
|
1.0
|
|
ND1
|
C:HIS97
|
4.2
|
55.1
|
1.0
|
|
C3C
|
C:HEM1002
|
4.3
|
62.4
|
1.0
|
|
C2C
|
C:HEM1002
|
4.3
|
70.7
|
1.0
|
|
C2A
|
C:HEM1002
|
4.3
|
71.7
|
1.0
|
|
C3D
|
C:HEM1002
|
4.3
|
59.8
|
1.0
|
|
C2D
|
C:HEM1002
|
4.3
|
61.0
|
1.0
|
|
C3A
|
C:HEM1002
|
4.3
|
73.2
|
1.0
|
|
C3B
|
C:HEM1002
|
4.3
|
63.9
|
1.0
|
|
C2B
|
C:HEM1002
|
4.3
|
63.8
|
1.0
|
|
HHD
|
C:HEM1002
|
4.4
|
72.4
|
1.0
|
|
HHA
|
C:HEM1002
|
4.4
|
71.1
|
1.0
|
|
HHC
|
C:HEM1002
|
4.4
|
71.0
|
1.0
|
|
HHB
|
C:HEM1002
|
4.4
|
70.4
|
1.0
|
|
HD12
|
C:LEU37
|
4.8
|
75.4
|
1.0
|
|
HH22
|
C:ARG100
|
4.8
|
66.5
|
1.0
|
|
HD1
|
C:HIS196
|
4.9
|
72.3
|
1.0
|
|
HA2
|
C:GLY34
|
4.9
|
74.2
|
1.0
|
|
HG22
|
C:THR112
|
5.0
|
75.2
|
1.0
|
|
Iron binding site 3 out
of 10 in 7tz6
Go back to
Iron Binding Sites List in 7tz6
Iron binding site 3 out
of 10 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe1001
b:114.9
occ:1.00
|
FE
|
D:HEC1001
|
0.0
|
114.9
|
1.0
|
|
NE2
|
D:HIS41
|
1.9
|
75.6
|
1.0
|
|
NC
|
D:HEC1001
|
2.0
|
70.0
|
1.0
|
|
NB
|
D:HEC1001
|
2.0
|
81.6
|
1.0
|
|
NA
|
D:HEC1001
|
2.0
|
79.8
|
1.0
|
|
ND
|
D:HEC1001
|
2.1
|
78.9
|
1.0
|
|
SD
|
D:MET160
|
2.1
|
84.3
|
1.0
|
|
CE1
|
D:HIS41
|
2.9
|
69.0
|
1.0
|
|
CD2
|
D:HIS41
|
2.9
|
75.8
|
1.0
|
|
C1A
|
D:HEC1001
|
3.0
|
84.8
|
1.0
|
|
C4B
|
D:HEC1001
|
3.0
|
76.2
|
1.0
|
|
C1C
|
D:HEC1001
|
3.0
|
73.7
|
1.0
|
|
C4D
|
D:HEC1001
|
3.0
|
71.6
|
1.0
|
|
C4C
|
D:HEC1001
|
3.1
|
75.2
|
1.0
|
|
C4A
|
D:HEC1001
|
3.1
|
69.9
|
1.0
|
|
C1B
|
D:HEC1001
|
3.1
|
76.4
|
1.0
|
|
C1D
|
D:HEC1001
|
3.1
|
85.7
|
1.0
|
|
HD2
|
D:HIS41
|
3.1
|
74.5
|
1.0
|
|
HE1
|
D:HIS41
|
3.1
|
73.3
|
1.0
|
|
CHA
|
D:HEC1001
|
3.4
|
82.0
|
1.0
|
|
CHC
|
D:HEC1001
|
3.4
|
81.8
|
1.0
|
|
CHD
|
D:HEC1001
|
3.4
|
87.0
|
1.0
|
|
CHB
|
D:HEC1001
|
3.5
|
76.1
|
1.0
|
|
CG
|
D:MET160
|
3.5
|
76.1
|
1.0
|
|
HG3
|
D:MET160
|
3.5
|
77.1
|
1.0
|
|
CE
|
D:MET160
|
3.5
|
77.5
|
1.0
|
|
HE1
|
D:MET160
|
3.6
|
77.4
|
1.0
|
|
HE2
|
D:MET160
|
3.8
|
78.3
|
1.0
|
|
HB2
|
D:MET160
|
3.9
|
77.8
|
1.0
|
|
ND1
|
D:HIS41
|
4.0
|
70.6
|
1.0
|
|
CG
|
D:HIS41
|
4.1
|
73.7
|
1.0
|
|
HG2
|
D:MET160
|
4.2
|
77.4
|
1.0
|
|
HE3
|
D:MET160
|
4.2
|
78.7
|
1.0
|
|
CB
|
D:MET160
|
4.3
|
83.2
|
1.0
|
|
C2A
|
D:HEC1001
|
4.3
|
81.3
|
1.0
|
|
C3B
|
D:HEC1001
|
4.3
|
75.8
|
1.0
|
|
C3A
|
D:HEC1001
|
4.3
|
77.5
|
1.0
|
|
C2C
|
D:HEC1001
|
4.3
|
78.5
|
1.0
|
|
C2B
|
D:HEC1001
|
4.3
|
76.8
|
1.0
|
|
C3C
|
D:HEC1001
|
4.3
|
78.7
|
1.0
|
|
C3D
|
D:HEC1001
|
4.3
|
74.6
|
1.0
|
|
C2D
|
D:HEC1001
|
4.3
|
76.6
|
1.0
|
|
HHA
|
D:HEC1001
|
4.4
|
80.7
|
1.0
|
|
HHC
|
D:HEC1001
|
4.4
|
80.8
|
1.0
|
|
HHD
|
D:HEC1001
|
4.4
|
80.8
|
1.0
|
|
HHB
|
D:HEC1001
|
4.4
|
80.2
|
1.0
|
|
HB3
|
D:PRO110
|
4.6
|
79.5
|
1.0
|
|
HB3
|
D:MET160
|
4.6
|
79.7
|
1.0
|
|
HD2
|
D:PRO111
|
4.8
|
71.6
|
1.0
|
|
HD1
|
D:HIS41
|
4.8
|
73.9
|
1.0
|
|
HD21
|
D:LEU113
|
5.0
|
70.4
|
1.0
|
|
Iron binding site 4 out
of 10 in 7tz6
Go back to
Iron Binding Sites List in 7tz6
Iron binding site 4 out
of 10 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe1001
b:93.7
occ:1.00
|
FE1
|
E:FES1001
|
0.0
|
93.7
|
1.0
|
|
S2
|
E:FES1001
|
2.2
|
45.6
|
1.0
|
|
S1
|
E:FES1001
|
2.2
|
79.5
|
1.0
|
|
SG
|
E:CYS158
|
2.3
|
57.5
|
1.0
|
|
SG
|
E:CYS139
|
2.3
|
56.8
|
1.0
|
|
FE2
|
E:FES1001
|
2.7
|
86.2
|
1.0
|
|
HB3
|
E:CYS139
|
2.8
|
58.6
|
1.0
|
|
HB3
|
E:HIS141
|
2.9
|
57.8
|
1.0
|
|
CB
|
E:CYS139
|
3.0
|
54.8
|
1.0
|
|
HB2
|
E:CYS144
|
3.1
|
62.1
|
1.0
|
|
HB2
|
E:CYS139
|
3.2
|
59.3
|
1.0
|
|
CB
|
E:CYS158
|
3.5
|
62.5
|
1.0
|
|
HB3
|
E:CYS158
|
3.5
|
63.5
|
1.0
|
|
H
|
E:LEU142
|
3.6
|
55.3
|
1.0
|
|
HB2
|
E:CYS160
|
3.7
|
62.1
|
1.0
|
|
HB2
|
E:CYS158
|
3.7
|
63.5
|
1.0
|
|
H
|
E:CYS144
|
3.7
|
60.0
|
1.0
|
|
CB
|
E:HIS141
|
3.9
|
54.8
|
1.0
|
|
H
|
E:HIS141
|
3.9
|
57.4
|
1.0
|
|
CB
|
E:CYS144
|
4.1
|
63.5
|
1.0
|
|
HG
|
E:SER163
|
4.1
|
70.6
|
1.0
|
|
HB2
|
E:HIS141
|
4.1
|
56.0
|
1.0
|
|
H
|
E:HIS161
|
4.2
|
60.2
|
1.0
|
|
H
|
E:GLY143
|
4.3
|
55.9
|
1.0
|
|
HB2
|
E:SER163
|
4.3
|
69.6
|
1.0
|
|
ND1
|
E:HIS141
|
4.3
|
63.2
|
1.0
|
|
OG
|
E:SER163
|
4.4
|
73.2
|
1.0
|
|
N
|
E:CYS144
|
4.4
|
55.3
|
1.0
|
|
N
|
E:LEU142
|
4.4
|
60.2
|
1.0
|
|
CA
|
E:CYS139
|
4.5
|
56.7
|
1.0
|
|
ND1
|
E:HIS161
|
4.5
|
63.4
|
1.0
|
|
CG
|
E:HIS141
|
4.6
|
60.5
|
1.0
|
|
HB3
|
E:CYS144
|
4.6
|
61.3
|
1.0
|
|
CB
|
E:CYS160
|
4.6
|
54.5
|
1.0
|
|
N
|
E:HIS141
|
4.7
|
56.1
|
1.0
|
|
HB2
|
E:HIS161
|
4.7
|
59.5
|
1.0
|
|
H
|
E:CYS160
|
4.7
|
62.6
|
1.0
|
|
CA
|
E:CYS144
|
4.8
|
59.2
|
1.0
|
|
CA
|
E:HIS141
|
4.8
|
50.5
|
1.0
|
|
O
|
E:CYS144
|
4.8
|
60.6
|
1.0
|
|
C
|
E:CYS139
|
4.9
|
63.5
|
1.0
|
|
CB
|
E:SER163
|
4.9
|
68.0
|
1.0
|
|
CA
|
E:CYS158
|
4.9
|
60.3
|
1.0
|
|
HB2
|
E:LEU142
|
4.9
|
52.9
|
1.0
|
|
N
|
E:GLY143
|
4.9
|
52.9
|
1.0
|
|
HA
|
E:CYS139
|
4.9
|
59.1
|
1.0
|
|
SG
|
E:CYS144
|
4.9
|
75.1
|
1.0
|
|
N
|
E:HIS161
|
4.9
|
62.6
|
1.0
|
|
Iron binding site 5 out
of 10 in 7tz6
Go back to
Iron Binding Sites List in 7tz6
Iron binding site 5 out
of 10 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe1001
b:86.2
occ:1.00
|
FE2
|
E:FES1001
|
0.0
|
86.2
|
1.0
|
|
ND1
|
E:HIS161
|
2.1
|
63.4
|
1.0
|
|
ND1
|
E:HIS141
|
2.1
|
63.2
|
1.0
|
|
S2
|
E:FES1001
|
2.2
|
45.6
|
1.0
|
|
S1
|
E:FES1001
|
2.2
|
79.5
|
1.0
|
|
HB2
|
E:HIS161
|
2.7
|
59.5
|
1.0
|
|
FE1
|
E:FES1001
|
2.7
|
93.7
|
1.0
|
|
HB3
|
E:HIS141
|
2.8
|
57.8
|
1.0
|
|
CG
|
E:HIS161
|
3.0
|
58.8
|
1.0
|
|
CG
|
E:HIS141
|
3.1
|
60.5
|
1.0
|
|
CE1
|
E:HIS141
|
3.1
|
58.8
|
1.0
|
|
CE1
|
E:HIS161
|
3.1
|
60.7
|
1.0
|
|
CB
|
E:HIS161
|
3.3
|
60.1
|
1.0
|
|
HE1
|
E:HIS141
|
3.3
|
57.8
|
1.0
|
|
HE1
|
E:HIS161
|
3.3
|
60.3
|
1.0
|
|
CB
|
E:HIS141
|
3.4
|
54.8
|
1.0
|
|
H
|
E:HIS161
|
3.5
|
60.2
|
1.0
|
|
HB2
|
E:CYS160
|
3.6
|
62.1
|
1.0
|
|
H
|
E:LEU142
|
3.8
|
55.3
|
1.0
|
|
HB2
|
E:HIS141
|
3.8
|
56.0
|
1.0
|
|
N
|
E:HIS161
|
3.8
|
62.6
|
1.0
|
|
HB2
|
E:LEU142
|
3.9
|
52.9
|
1.0
|
|
HB3
|
E:HIS161
|
4.0
|
59.4
|
1.0
|
|
HG
|
E:SER163
|
4.1
|
70.6
|
1.0
|
|
CA
|
E:HIS161
|
4.1
|
57.7
|
1.0
|
|
CD2
|
E:HIS161
|
4.2
|
54.1
|
1.0
|
|
NE2
|
E:HIS161
|
4.2
|
53.4
|
1.0
|
|
NE2
|
E:HIS141
|
4.2
|
44.7
|
1.0
|
|
SG
|
E:CYS158
|
4.2
|
57.5
|
1.0
|
|
CD2
|
E:HIS141
|
4.2
|
49.8
|
1.0
|
|
HB3
|
E:CYS160
|
4.3
|
60.2
|
1.0
|
|
HG2
|
E:PRO175
|
4.3
|
60.4
|
1.0
|
|
N
|
E:LEU142
|
4.3
|
60.2
|
1.0
|
|
CB
|
E:CYS160
|
4.4
|
54.5
|
1.0
|
|
HG
|
E:LEU142
|
4.4
|
54.4
|
1.0
|
|
SG
|
E:CYS139
|
4.5
|
56.8
|
1.0
|
|
OG
|
E:SER163
|
4.5
|
73.2
|
1.0
|
|
C
|
E:CYS160
|
4.5
|
58.2
|
1.0
|
|
HD12
|
E:LEU142
|
4.5
|
54.0
|
1.0
|
|
CA
|
E:HIS141
|
4.6
|
50.5
|
1.0
|
|
CB
|
E:LEU142
|
4.7
|
47.0
|
1.0
|
|
C
|
E:HIS141
|
4.8
|
54.7
|
1.0
|
|
HB2
|
E:CYS144
|
4.8
|
62.1
|
1.0
|
|
HD11
|
E:LEU142
|
4.8
|
53.4
|
1.0
|
|
CG
|
E:LEU142
|
4.9
|
53.0
|
1.0
|
|
C
|
E:HIS161
|
4.9
|
58.6
|
1.0
|
|
HA
|
E:HIS161
|
4.9
|
59.1
|
1.0
|
|
H
|
E:HIS141
|
4.9
|
57.4
|
1.0
|
|
HE2
|
E:HIS161
|
5.0
|
59.2
|
1.0
|
|
CD1
|
E:LEU142
|
5.0
|
49.4
|
1.0
|
|
HE2
|
E:HIS141
|
5.0
|
55.5
|
1.0
|
|
HD2
|
E:HIS161
|
5.0
|
59.3
|
1.0
|
|
Iron binding site 6 out
of 10 in 7tz6
Go back to
Iron Binding Sites List in 7tz6
Iron binding site 6 out
of 10 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe1001
b:61.2
occ:1.00
|
FE
|
P:HEM1001
|
0.0
|
61.2
|
1.0
|
|
NA
|
P:HEM1001
|
2.0
|
41.2
|
1.0
|
|
ND
|
P:HEM1001
|
2.0
|
33.1
|
1.0
|
|
NC
|
P:HEM1001
|
2.0
|
32.3
|
1.0
|
|
NB
|
P:HEM1001
|
2.0
|
34.4
|
1.0
|
|
NE2
|
P:HIS83
|
2.1
|
43.3
|
1.0
|
|
NE2
|
P:HIS182
|
2.1
|
48.1
|
1.0
|
|
CE1
|
P:HIS83
|
2.9
|
40.3
|
1.0
|
|
CE1
|
P:HIS182
|
2.9
|
44.9
|
1.0
|
|
HE1
|
P:HIS83
|
3.0
|
45.9
|
1.0
|
|
C1D
|
P:HEM1001
|
3.0
|
35.8
|
1.0
|
|
C4C
|
P:HEM1001
|
3.0
|
35.9
|
1.0
|
|
C4A
|
P:HEM1001
|
3.0
|
42.5
|
1.0
|
|
C1A
|
P:HEM1001
|
3.1
|
28.8
|
1.0
|
|
C4B
|
P:HEM1001
|
3.1
|
37.7
|
1.0
|
|
C1C
|
P:HEM1001
|
3.1
|
28.1
|
1.0
|
|
C1B
|
P:HEM1001
|
3.1
|
31.5
|
1.0
|
|
HE1
|
P:HIS182
|
3.1
|
45.2
|
1.0
|
|
C4D
|
P:HEM1001
|
3.1
|
38.0
|
1.0
|
|
CD2
|
P:HIS182
|
3.2
|
39.5
|
1.0
|
|
CD2
|
P:HIS83
|
3.2
|
47.9
|
1.0
|
|
CHD
|
P:HEM1001
|
3.4
|
34.9
|
1.0
|
|
CHB
|
P:HEM1001
|
3.4
|
33.8
|
1.0
|
|
HD2
|
P:HIS182
|
3.4
|
44.2
|
1.0
|
|
CHC
|
P:HEM1001
|
3.4
|
32.6
|
1.0
|
|
CHA
|
P:HEM1001
|
3.4
|
34.0
|
1.0
|
|
HD2
|
P:HIS83
|
3.5
|
46.1
|
1.0
|
|
ND1
|
P:HIS83
|
4.1
|
36.0
|
1.0
|
|
ND1
|
P:HIS182
|
4.1
|
42.4
|
1.0
|
|
CG
|
P:HIS182
|
4.2
|
39.3
|
1.0
|
|
C2D
|
P:HEM1001
|
4.3
|
36.7
|
1.0
|
|
C3A
|
P:HEM1001
|
4.3
|
36.4
|
1.0
|
|
CG
|
P:HIS83
|
4.3
|
43.2
|
1.0
|
|
C2A
|
P:HEM1001
|
4.3
|
35.5
|
1.0
|
|
C3C
|
P:HEM1001
|
4.3
|
38.3
|
1.0
|
|
C2C
|
P:HEM1001
|
4.3
|
32.9
|
1.0
|
|
C3B
|
P:HEM1001
|
4.3
|
41.1
|
1.0
|
|
C2B
|
P:HEM1001
|
4.3
|
39.0
|
1.0
|
|
C3D
|
P:HEM1001
|
4.3
|
35.8
|
1.0
|
|
HA3
|
P:GLY130
|
4.3
|
42.3
|
1.0
|
|
HHD
|
P:HEM1001
|
4.4
|
41.2
|
1.0
|
|
HHB
|
P:HEM1001
|
4.4
|
41.0
|
1.0
|
|
HHC
|
P:HEM1001
|
4.4
|
40.8
|
1.0
|
|
HHA
|
P:HEM1001
|
4.4
|
41.2
|
1.0
|
|
HA3
|
P:GLY48
|
4.6
|
46.5
|
1.0
|
|
HA2
|
P:GLY130
|
4.6
|
40.2
|
1.0
|
|
HE21
|
P:GLN44
|
4.7
|
48.5
|
1.0
|
|
HD1
|
P:HIS83
|
4.8
|
45.3
|
1.0
|
|
HD12
|
P:LEU133
|
4.9
|
45.4
|
1.0
|
|
HA2
|
P:GLY48
|
4.9
|
46.0
|
1.0
|
|
HD1
|
P:HIS182
|
4.9
|
46.0
|
1.0
|
|
CA
|
P:GLY130
|
4.9
|
25.6
|
1.0
|
|
Iron binding site 7 out
of 10 in 7tz6
Go back to
Iron Binding Sites List in 7tz6
Iron binding site 7 out
of 10 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe1002
b:81.6
occ:1.00
|
FE
|
P:HEM1002
|
0.0
|
81.6
|
1.0
|
|
ND
|
P:HEM1002
|
2.0
|
60.8
|
1.0
|
|
NA
|
P:HEM1002
|
2.0
|
43.9
|
1.0
|
|
NC
|
P:HEM1002
|
2.0
|
37.8
|
1.0
|
|
NB
|
P:HEM1002
|
2.0
|
53.3
|
1.0
|
|
NE2
|
P:HIS97
|
2.1
|
35.5
|
1.0
|
|
NE2
|
P:HIS196
|
2.1
|
40.9
|
1.0
|
|
CD2
|
P:HIS97
|
3.0
|
48.7
|
1.0
|
|
C1D
|
P:HEM1002
|
3.0
|
52.5
|
1.0
|
|
C4C
|
P:HEM1002
|
3.0
|
45.7
|
1.0
|
|
CD2
|
P:HIS196
|
3.0
|
44.3
|
1.0
|
|
C4A
|
P:HEM1002
|
3.0
|
50.2
|
1.0
|
|
C4D
|
P:HEM1002
|
3.0
|
47.1
|
1.0
|
|
C1A
|
P:HEM1002
|
3.0
|
42.5
|
1.0
|
|
C1B
|
P:HEM1002
|
3.1
|
42.2
|
1.0
|
|
HD2
|
P:HIS97
|
3.1
|
44.0
|
1.0
|
|
C1C
|
P:HEM1002
|
3.1
|
34.9
|
1.0
|
|
C4B
|
P:HEM1002
|
3.1
|
51.7
|
1.0
|
|
HD2
|
P:HIS196
|
3.1
|
49.9
|
1.0
|
|
CE1
|
P:HIS196
|
3.2
|
43.1
|
1.0
|
|
CE1
|
P:HIS97
|
3.2
|
29.1
|
1.0
|
|
CHD
|
P:HEM1002
|
3.4
|
50.8
|
1.0
|
|
CHB
|
P:HEM1002
|
3.4
|
46.3
|
1.0
|
|
CHA
|
P:HEM1002
|
3.4
|
42.7
|
1.0
|
|
HE1
|
P:HIS196
|
3.4
|
49.2
|
1.0
|
|
CHC
|
P:HEM1002
|
3.5
|
44.7
|
1.0
|
|
HE1
|
P:HIS97
|
3.5
|
42.3
|
1.0
|
|
CG
|
P:HIS97
|
4.2
|
39.4
|
1.0
|
|
CG
|
P:HIS196
|
4.2
|
48.3
|
1.0
|
|
C3C
|
P:HEM1002
|
4.2
|
48.1
|
1.0
|
|
C2D
|
P:HEM1002
|
4.2
|
42.1
|
1.0
|
|
ND1
|
P:HIS97
|
4.2
|
33.0
|
1.0
|
|
C3D
|
P:HEM1002
|
4.2
|
42.9
|
1.0
|
|
ND1
|
P:HIS196
|
4.3
|
51.8
|
1.0
|
|
C3A
|
P:HEM1002
|
4.3
|
49.3
|
1.0
|
|
C2C
|
P:HEM1002
|
4.3
|
47.9
|
1.0
|
|
C2A
|
P:HEM1002
|
4.3
|
47.1
|
1.0
|
|
C2B
|
P:HEM1002
|
4.3
|
40.8
|
1.0
|
|
C3B
|
P:HEM1002
|
4.3
|
47.2
|
1.0
|
|
HHD
|
P:HEM1002
|
4.3
|
50.8
|
1.0
|
|
HHB
|
P:HEM1002
|
4.4
|
50.1
|
1.0
|
|
HHA
|
P:HEM1002
|
4.4
|
49.8
|
1.0
|
|
HHC
|
P:HEM1002
|
4.4
|
50.4
|
1.0
|
|
HH22
|
P:ARG100
|
4.7
|
49.9
|
1.0
|
|
HD12
|
P:LEU37
|
4.9
|
53.8
|
1.0
|
|
HG22
|
P:THR112
|
5.0
|
54.4
|
1.0
|
|
HA2
|
P:GLY34
|
5.0
|
52.6
|
1.0
|
|
Iron binding site 8 out
of 10 in 7tz6
Go back to
Iron Binding Sites List in 7tz6
Iron binding site 8 out
of 10 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Fe1001
b:97.6
occ:1.00
|
FE
|
Q:HEC1001
|
0.0
|
97.6
|
1.0
|
|
NE2
|
Q:HIS41
|
2.0
|
57.8
|
1.0
|
|
NC
|
Q:HEC1001
|
2.0
|
51.4
|
1.0
|
|
NA
|
Q:HEC1001
|
2.0
|
53.3
|
1.0
|
|
ND
|
Q:HEC1001
|
2.1
|
58.3
|
1.0
|
|
NB
|
Q:HEC1001
|
2.1
|
58.0
|
1.0
|
|
SD
|
Q:MET160
|
2.2
|
51.7
|
1.0
|
|
CD2
|
Q:HIS41
|
3.0
|
60.1
|
1.0
|
|
CE1
|
Q:HIS41
|
3.0
|
48.4
|
1.0
|
|
C1D
|
Q:HEC1001
|
3.1
|
65.5
|
1.0
|
|
C1A
|
Q:HEC1001
|
3.1
|
55.0
|
1.0
|
|
C4C
|
Q:HEC1001
|
3.1
|
47.2
|
1.0
|
|
C4A
|
Q:HEC1001
|
3.1
|
46.1
|
1.0
|
|
C4D
|
Q:HEC1001
|
3.1
|
48.9
|
1.0
|
|
C1C
|
Q:HEC1001
|
3.1
|
53.2
|
1.0
|
|
C4B
|
Q:HEC1001
|
3.1
|
61.0
|
1.0
|
|
C1B
|
Q:HEC1001
|
3.1
|
53.7
|
1.0
|
|
HD2
|
Q:HIS41
|
3.2
|
56.4
|
1.0
|
|
HE1
|
Q:HIS41
|
3.2
|
55.0
|
1.0
|
|
CE
|
Q:MET160
|
3.4
|
52.3
|
1.0
|
|
HG3
|
Q:MET160
|
3.4
|
52.9
|
1.0
|
|
CHD
|
Q:HEC1001
|
3.4
|
59.0
|
1.0
|
|
CHA
|
Q:HEC1001
|
3.4
|
52.7
|
1.0
|
|
CHC
|
Q:HEC1001
|
3.4
|
61.3
|
1.0
|
|
CHB
|
Q:HEC1001
|
3.4
|
58.8
|
1.0
|
|
CG
|
Q:MET160
|
3.5
|
54.0
|
1.0
|
|
HE2
|
Q:MET160
|
3.5
|
54.0
|
1.0
|
|
HE1
|
Q:MET160
|
3.5
|
52.1
|
1.0
|
|
HB2
|
Q:MET160
|
3.9
|
52.8
|
1.0
|
|
ND1
|
Q:HIS41
|
4.1
|
46.2
|
1.0
|
|
CG
|
Q:HIS41
|
4.1
|
54.8
|
1.0
|
|
HG2
|
Q:MET160
|
4.2
|
53.1
|
1.0
|
|
HE3
|
Q:MET160
|
4.2
|
53.9
|
1.0
|
|
CB
|
Q:MET160
|
4.3
|
55.4
|
1.0
|
|
C3A
|
Q:HEC1001
|
4.3
|
49.1
|
1.0
|
|
C2A
|
Q:HEC1001
|
4.3
|
54.6
|
1.0
|
|
C2C
|
Q:HEC1001
|
4.3
|
58.3
|
1.0
|
|
C3C
|
Q:HEC1001
|
4.3
|
55.0
|
1.0
|
|
C3D
|
Q:HEC1001
|
4.3
|
52.2
|
1.0
|
|
C2B
|
Q:HEC1001
|
4.3
|
56.2
|
1.0
|
|
C2D
|
Q:HEC1001
|
4.3
|
61.5
|
1.0
|
|
C3B
|
Q:HEC1001
|
4.3
|
58.0
|
1.0
|
|
HB3
|
Q:PRO110
|
4.4
|
56.1
|
1.0
|
|
HHD
|
Q:HEC1001
|
4.4
|
58.8
|
1.0
|
|
HHA
|
Q:HEC1001
|
4.4
|
57.9
|
1.0
|
|
HHB
|
Q:HEC1001
|
4.4
|
59.1
|
1.0
|
|
HHC
|
Q:HEC1001
|
4.4
|
59.1
|
1.0
|
|
HB3
|
Q:MET160
|
4.6
|
53.9
|
1.0
|
|
HB2
|
Q:CYS40
|
4.8
|
56.1
|
1.0
|
|
HD1
|
Q:HIS41
|
4.9
|
55.0
|
1.0
|
|
HG3
|
Q:PRO163
|
4.9
|
58.0
|
1.0
|
|
Iron binding site 9 out
of 10 in 7tz6
Go back to
Iron Binding Sites List in 7tz6
Iron binding site 9 out
of 10 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Fe1001
b:71.1
occ:1.00
|
FE1
|
R:FES1001
|
0.0
|
71.1
|
1.0
|
|
S2
|
R:FES1001
|
2.2
|
34.3
|
1.0
|
|
S1
|
R:FES1001
|
2.2
|
54.5
|
1.0
|
|
SG
|
R:CYS158
|
2.3
|
33.8
|
1.0
|
|
SG
|
R:CYS139
|
2.3
|
56.5
|
1.0
|
|
FE2
|
R:FES1001
|
2.7
|
74.1
|
1.0
|
|
HB3
|
R:HIS141
|
2.9
|
43.5
|
1.0
|
|
HB3
|
R:CYS139
|
3.0
|
47.3
|
1.0
|
|
CB
|
R:CYS139
|
3.1
|
41.8
|
1.0
|
|
HB2
|
R:CYS144
|
3.2
|
48.9
|
1.0
|
|
HB2
|
R:CYS139
|
3.3
|
47.7
|
1.0
|
|
HB3
|
R:CYS158
|
3.3
|
44.2
|
1.0
|
|
CB
|
R:CYS158
|
3.4
|
39.3
|
1.0
|
|
HB2
|
R:CYS160
|
3.5
|
46.6
|
1.0
|
|
HB2
|
R:CYS158
|
3.6
|
43.8
|
1.0
|
|
H
|
R:LEU142
|
3.7
|
41.4
|
1.0
|
|
CB
|
R:HIS141
|
3.8
|
41.7
|
1.0
|
|
H
|
R:CYS144
|
3.8
|
46.4
|
1.0
|
|
HB2
|
R:SER163
|
3.9
|
52.1
|
1.0
|
|
HB2
|
R:HIS141
|
4.0
|
42.4
|
1.0
|
|
H
|
R:HIS141
|
4.0
|
42.7
|
1.0
|
|
HG
|
R:SER163
|
4.1
|
50.4
|
1.0
|
|
CB
|
R:CYS144
|
4.1
|
51.7
|
1.0
|
|
H
|
R:HIS161
|
4.2
|
46.5
|
1.0
|
|
ND1
|
R:HIS141
|
4.3
|
42.3
|
1.0
|
|
OG
|
R:SER163
|
4.3
|
42.7
|
1.0
|
|
CB
|
R:CYS160
|
4.5
|
42.1
|
1.0
|
|
HH
|
R:TYR165
|
4.5
|
54.0
|
1.0
|
|
N
|
R:LEU142
|
4.5
|
43.3
|
1.0
|
|
N
|
R:CYS144
|
4.5
|
43.5
|
1.0
|
|
CG
|
R:HIS141
|
4.5
|
36.5
|
1.0
|
|
HB3
|
R:CYS144
|
4.5
|
47.6
|
1.0
|
|
CA
|
R:CYS139
|
4.6
|
37.4
|
1.0
|
|
ND1
|
R:HIS161
|
4.6
|
47.4
|
1.0
|
|
CB
|
R:SER163
|
4.6
|
51.4
|
1.0
|
|
H
|
R:SER163
|
4.7
|
52.1
|
1.0
|
|
HB2
|
R:HIS161
|
4.7
|
45.5
|
1.0
|
|
H
|
R:CYS160
|
4.7
|
46.6
|
1.0
|
|
CA
|
R:CYS158
|
4.7
|
34.9
|
1.0
|
|
N
|
R:HIS141
|
4.7
|
43.1
|
1.0
|
|
H
|
R:GLY143
|
4.7
|
44.0
|
1.0
|
|
CA
|
R:HIS141
|
4.8
|
35.2
|
1.0
|
|
HB3
|
R:CYS160
|
4.8
|
45.4
|
1.0
|
|
CA
|
R:CYS144
|
4.8
|
46.4
|
1.0
|
|
N
|
R:HIS161
|
4.9
|
48.9
|
1.0
|
|
HB2
|
R:LEU142
|
4.9
|
39.9
|
1.0
|
|
HA
|
R:CYS139
|
4.9
|
46.6
|
1.0
|
|
SG
|
R:CYS144
|
4.9
|
64.5
|
1.0
|
|
HB2
|
R:ALA176
|
5.0
|
54.8
|
1.0
|
|
C
|
R:CYS139
|
5.0
|
52.2
|
1.0
|
|
HA
|
R:CYS158
|
5.0
|
43.2
|
1.0
|
|
Iron binding site 10 out
of 10 in 7tz6
Go back to
Iron Binding Sites List in 7tz6
Iron binding site 10 out
of 10 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Fe1001
b:74.1
occ:1.00
|
FE2
|
R:FES1001
|
0.0
|
74.1
|
1.0
|
|
ND1
|
R:HIS161
|
2.1
|
47.4
|
1.0
|
|
ND1
|
R:HIS141
|
2.1
|
42.3
|
1.0
|
|
S1
|
R:FES1001
|
2.2
|
54.5
|
1.0
|
|
S2
|
R:FES1001
|
2.2
|
34.3
|
1.0
|
|
HB2
|
R:HIS161
|
2.6
|
45.5
|
1.0
|
|
FE1
|
R:FES1001
|
2.7
|
71.1
|
1.0
|
|
HB3
|
R:HIS141
|
2.8
|
43.5
|
1.0
|
|
CG
|
R:HIS161
|
3.0
|
44.9
|
1.0
|
|
CE1
|
R:HIS141
|
3.1
|
42.2
|
1.0
|
|
CG
|
R:HIS141
|
3.1
|
36.5
|
1.0
|
|
CE1
|
R:HIS161
|
3.2
|
45.4
|
1.0
|
|
CB
|
R:HIS161
|
3.2
|
45.7
|
1.0
|
|
HE1
|
R:HIS141
|
3.3
|
42.6
|
1.0
|
|
CB
|
R:HIS141
|
3.4
|
41.7
|
1.0
|
|
HE1
|
R:HIS161
|
3.4
|
46.0
|
1.0
|
|
HB2
|
R:CYS160
|
3.4
|
46.6
|
1.0
|
|
H
|
R:HIS161
|
3.4
|
46.5
|
1.0
|
|
H
|
R:LEU142
|
3.7
|
41.4
|
1.0
|
|
N
|
R:HIS161
|
3.7
|
48.9
|
1.0
|
|
HB2
|
R:LEU142
|
3.8
|
39.9
|
1.0
|
|
HB2
|
R:HIS141
|
3.8
|
42.4
|
1.0
|
|
HB3
|
R:CYS160
|
3.9
|
45.4
|
1.0
|
|
HB3
|
R:HIS161
|
4.0
|
45.6
|
1.0
|
|
CA
|
R:HIS161
|
4.0
|
42.6
|
1.0
|
|
HG
|
R:SER163
|
4.1
|
50.4
|
1.0
|
|
CB
|
R:CYS160
|
4.1
|
42.1
|
1.0
|
|
CD2
|
R:HIS161
|
4.2
|
41.9
|
1.0
|
|
NE2
|
R:HIS141
|
4.2
|
33.9
|
1.0
|
|
HG2
|
R:PRO175
|
4.2
|
48.9
|
1.0
|
|
CD2
|
R:HIS141
|
4.2
|
36.0
|
1.0
|
|
NE2
|
R:HIS161
|
4.2
|
41.0
|
1.0
|
|
N
|
R:LEU142
|
4.3
|
43.3
|
1.0
|
|
SG
|
R:CYS158
|
4.4
|
33.8
|
1.0
|
|
C
|
R:CYS160
|
4.4
|
43.5
|
1.0
|
|
HG
|
R:LEU142
|
4.5
|
39.7
|
1.0
|
|
SG
|
R:CYS139
|
4.5
|
56.5
|
1.0
|
|
HG3
|
R:PRO175
|
4.5
|
48.5
|
1.0
|
|
HD12
|
R:LEU142
|
4.5
|
40.9
|
1.0
|
|
CB
|
R:LEU142
|
4.6
|
35.4
|
1.0
|
|
OG
|
R:SER163
|
4.6
|
42.7
|
1.0
|
|
CA
|
R:HIS141
|
4.7
|
35.2
|
1.0
|
|
HB2
|
R:CYS144
|
4.7
|
48.9
|
1.0
|
|
CG
|
R:PRO175
|
4.8
|
50.3
|
1.0
|
|
C
|
R:HIS161
|
4.8
|
46.4
|
1.0
|
|
CA
|
R:CYS160
|
4.8
|
39.2
|
1.0
|
|
HA
|
R:HIS161
|
4.8
|
45.0
|
1.0
|
|
C
|
R:HIS141
|
4.9
|
39.0
|
1.0
|
|
HD11
|
R:LEU142
|
4.9
|
39.3
|
1.0
|
|
CG
|
R:LEU142
|
4.9
|
35.3
|
1.0
|
|
HE2
|
R:HIS141
|
4.9
|
41.3
|
1.0
|
|
HB3
|
R:CYS158
|
4.9
|
44.2
|
1.0
|
|
HD2
|
R:HIS161
|
5.0
|
45.7
|
1.0
|
|
Reference:
D.Xia,
L.Esser,
F.Zhou.
Conformation Switch of Rieske Isp Subunit Is Revealed By the Crystal Structure of Bacterial Cytochrome BC1 in Complex with Azoxystrobin To Be Published.
Page generated: Fri Aug 9 02:40:52 2024
|
