Iron in PDB 7uam: Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine)
Enzymatic activity of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine)
All present enzymatic activity of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine):
1.14.13.39;
Protein crystallography data
The structure of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine), PDB code: 7uam
was solved by
H.Li,
T.L.Poulos,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.13 /
1.84
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
52.379,
117.663,
165.318,
90,
90.29,
90
|
R / Rfree (%)
|
17 /
20.7
|
Other elements in 7uam:
The structure of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine) also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine)
(pdb code 7uam). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine), PDB code: 7uam:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 7uam
Go back to
Iron Binding Sites List in 7uam
Iron binding site 1 out
of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe801
b:22.6
occ:1.00
|
FE
|
A:HEM801
|
0.0
|
22.6
|
1.0
|
ND
|
A:HEM801
|
2.0
|
19.7
|
1.0
|
NB
|
A:HEM801
|
2.1
|
23.3
|
1.0
|
NC
|
A:HEM801
|
2.1
|
15.8
|
1.0
|
NA
|
A:HEM801
|
2.1
|
25.7
|
1.0
|
SG
|
A:CYS420
|
2.4
|
22.6
|
1.0
|
C1D
|
A:HEM801
|
3.0
|
20.5
|
1.0
|
C4D
|
A:HEM801
|
3.1
|
24.1
|
1.0
|
C4C
|
A:HEM801
|
3.1
|
21.2
|
1.0
|
C4B
|
A:HEM801
|
3.1
|
29.0
|
1.0
|
C1C
|
A:HEM801
|
3.1
|
22.9
|
1.0
|
C1B
|
A:HEM801
|
3.1
|
24.4
|
1.0
|
C4A
|
A:HEM801
|
3.1
|
31.4
|
1.0
|
C1A
|
A:HEM801
|
3.1
|
26.8
|
1.0
|
CHD
|
A:HEM801
|
3.4
|
23.4
|
1.0
|
CB
|
A:CYS420
|
3.4
|
17.8
|
1.0
|
CHC
|
A:HEM801
|
3.4
|
21.6
|
1.0
|
CHA
|
A:HEM801
|
3.5
|
21.7
|
1.0
|
CHB
|
A:HEM801
|
3.5
|
26.9
|
1.0
|
C04
|
A:M5L803
|
4.1
|
23.9
|
1.0
|
C03
|
A:M5L803
|
4.2
|
23.9
|
1.0
|
CA
|
A:CYS420
|
4.2
|
19.8
|
1.0
|
C2D
|
A:HEM801
|
4.2
|
19.4
|
1.0
|
C3D
|
A:HEM801
|
4.3
|
28.0
|
1.0
|
C3C
|
A:HEM801
|
4.3
|
21.4
|
1.0
|
C2B
|
A:HEM801
|
4.3
|
22.2
|
1.0
|
C2C
|
A:HEM801
|
4.3
|
22.5
|
1.0
|
C3B
|
A:HEM801
|
4.3
|
25.6
|
1.0
|
C2A
|
A:HEM801
|
4.4
|
28.5
|
1.0
|
C3A
|
A:HEM801
|
4.4
|
28.4
|
1.0
|
C07
|
A:M5L803
|
4.4
|
23.6
|
1.0
|
NE1
|
A:TRP414
|
4.4
|
19.0
|
1.0
|
C05
|
A:M5L803
|
4.5
|
27.6
|
1.0
|
C02
|
A:M5L803
|
4.6
|
25.7
|
1.0
|
N
|
A:GLY422
|
4.8
|
25.4
|
1.0
|
C06
|
A:M5L803
|
4.9
|
30.0
|
1.0
|
N01
|
A:M5L803
|
4.9
|
29.2
|
1.0
|
C
|
A:CYS420
|
4.9
|
19.5
|
1.0
|
|
Iron binding site 2 out
of 4 in 7uam
Go back to
Iron Binding Sites List in 7uam
Iron binding site 2 out
of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe801
b:21.7
occ:1.00
|
FE
|
B:HEM801
|
0.0
|
21.7
|
1.0
|
ND
|
B:HEM801
|
2.0
|
19.9
|
1.0
|
NC
|
B:HEM801
|
2.1
|
16.6
|
1.0
|
NB
|
B:HEM801
|
2.1
|
25.3
|
1.0
|
NA
|
B:HEM801
|
2.1
|
22.2
|
1.0
|
SG
|
B:CYS420
|
2.4
|
22.8
|
1.0
|
C1C
|
B:HEM801
|
3.0
|
21.8
|
1.0
|
C4D
|
B:HEM801
|
3.1
|
22.3
|
1.0
|
C1D
|
B:HEM801
|
3.1
|
24.2
|
1.0
|
C4B
|
B:HEM801
|
3.1
|
25.9
|
1.0
|
C1A
|
B:HEM801
|
3.1
|
22.3
|
1.0
|
C4C
|
B:HEM801
|
3.1
|
19.8
|
1.0
|
C1B
|
B:HEM801
|
3.1
|
22.7
|
1.0
|
C4A
|
B:HEM801
|
3.1
|
25.6
|
1.0
|
CB
|
B:CYS420
|
3.4
|
19.6
|
1.0
|
CHC
|
B:HEM801
|
3.4
|
22.8
|
1.0
|
CHA
|
B:HEM801
|
3.4
|
21.2
|
1.0
|
CHB
|
B:HEM801
|
3.5
|
25.0
|
1.0
|
CHD
|
B:HEM801
|
3.5
|
23.4
|
1.0
|
C04
|
B:M5L803
|
4.1
|
23.1
|
1.0
|
CA
|
B:CYS420
|
4.2
|
20.2
|
1.0
|
C03
|
B:M5L803
|
4.2
|
22.0
|
1.0
|
C3D
|
B:HEM801
|
4.3
|
21.8
|
1.0
|
C2D
|
B:HEM801
|
4.3
|
22.6
|
1.0
|
C2C
|
B:HEM801
|
4.3
|
20.0
|
1.0
|
C2A
|
B:HEM801
|
4.3
|
25.1
|
1.0
|
C3B
|
B:HEM801
|
4.3
|
25.7
|
1.0
|
C3C
|
B:HEM801
|
4.3
|
19.7
|
1.0
|
C2B
|
B:HEM801
|
4.3
|
21.8
|
1.0
|
C3A
|
B:HEM801
|
4.3
|
24.9
|
1.0
|
C05
|
B:M5L803
|
4.4
|
32.9
|
1.0
|
NE1
|
B:TRP414
|
4.4
|
23.8
|
1.0
|
C07
|
B:M5L803
|
4.4
|
23.6
|
1.0
|
C02
|
B:M5L803
|
4.5
|
25.1
|
1.0
|
C06
|
B:M5L803
|
4.8
|
34.5
|
1.0
|
N01
|
B:M5L803
|
4.8
|
25.7
|
1.0
|
N
|
B:GLY422
|
4.8
|
22.6
|
1.0
|
C
|
B:CYS420
|
4.9
|
19.9
|
1.0
|
|
Iron binding site 3 out
of 4 in 7uam
Go back to
Iron Binding Sites List in 7uam
Iron binding site 3 out
of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe801
b:21.1
occ:1.00
|
FE
|
C:HEM801
|
0.0
|
21.1
|
1.0
|
ND
|
C:HEM801
|
2.1
|
21.8
|
1.0
|
NC
|
C:HEM801
|
2.1
|
18.5
|
1.0
|
NB
|
C:HEM801
|
2.1
|
25.4
|
1.0
|
NA
|
C:HEM801
|
2.1
|
22.1
|
1.0
|
SG
|
C:CYS420
|
2.4
|
22.2
|
1.0
|
C1D
|
C:HEM801
|
3.1
|
26.3
|
1.0
|
C4D
|
C:HEM801
|
3.1
|
22.5
|
1.0
|
C1B
|
C:HEM801
|
3.1
|
22.9
|
1.0
|
C4C
|
C:HEM801
|
3.1
|
18.6
|
1.0
|
C1C
|
C:HEM801
|
3.1
|
22.2
|
1.0
|
C4A
|
C:HEM801
|
3.1
|
23.7
|
1.0
|
C4B
|
C:HEM801
|
3.1
|
23.1
|
1.0
|
C1A
|
C:HEM801
|
3.1
|
20.2
|
1.0
|
CB
|
C:CYS420
|
3.4
|
16.5
|
1.0
|
CHD
|
C:HEM801
|
3.4
|
23.4
|
1.0
|
CHB
|
C:HEM801
|
3.4
|
22.9
|
1.0
|
CHC
|
C:HEM801
|
3.5
|
18.4
|
1.0
|
CHA
|
C:HEM801
|
3.5
|
19.6
|
1.0
|
C04
|
C:M5L803
|
4.1
|
21.4
|
1.0
|
CA
|
C:CYS420
|
4.2
|
20.2
|
1.0
|
C03
|
C:M5L803
|
4.2
|
18.4
|
1.0
|
C3D
|
C:HEM801
|
4.2
|
24.7
|
1.0
|
C2D
|
C:HEM801
|
4.3
|
24.0
|
1.0
|
C2B
|
C:HEM801
|
4.3
|
20.4
|
1.0
|
C2C
|
C:HEM801
|
4.3
|
17.6
|
1.0
|
C3C
|
C:HEM801
|
4.3
|
18.3
|
1.0
|
C3B
|
C:HEM801
|
4.3
|
20.6
|
1.0
|
C2A
|
C:HEM801
|
4.3
|
27.6
|
1.0
|
C3A
|
C:HEM801
|
4.3
|
24.9
|
1.0
|
NE1
|
C:TRP414
|
4.4
|
22.6
|
1.0
|
C05
|
C:M5L803
|
4.5
|
32.8
|
1.0
|
C07
|
C:M5L803
|
4.5
|
19.1
|
1.0
|
C02
|
C:M5L803
|
4.5
|
24.9
|
1.0
|
N
|
C:GLY422
|
4.8
|
20.5
|
1.0
|
C06
|
C:M5L803
|
4.8
|
32.0
|
1.0
|
N01
|
C:M5L803
|
4.8
|
24.2
|
1.0
|
C
|
C:CYS420
|
4.9
|
22.1
|
1.0
|
|
Iron binding site 4 out
of 4 in 7uam
Go back to
Iron Binding Sites List in 7uam
Iron binding site 4 out
of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe802
b:21.7
occ:1.00
|
FE
|
D:HEM802
|
0.0
|
21.7
|
1.0
|
ND
|
D:HEM802
|
2.0
|
18.6
|
1.0
|
NB
|
D:HEM802
|
2.1
|
23.4
|
1.0
|
NC
|
D:HEM802
|
2.1
|
17.2
|
1.0
|
NA
|
D:HEM802
|
2.1
|
24.9
|
1.0
|
SG
|
D:CYS420
|
2.4
|
22.9
|
1.0
|
C4D
|
D:HEM802
|
3.0
|
22.3
|
1.0
|
C1C
|
D:HEM802
|
3.1
|
20.0
|
1.0
|
C1D
|
D:HEM802
|
3.1
|
21.8
|
1.0
|
C4B
|
D:HEM802
|
3.1
|
30.3
|
1.0
|
C4C
|
D:HEM802
|
3.1
|
20.8
|
1.0
|
C1B
|
D:HEM802
|
3.1
|
24.0
|
1.0
|
C1A
|
D:HEM802
|
3.1
|
21.3
|
1.0
|
C4A
|
D:HEM802
|
3.1
|
25.5
|
1.0
|
CHC
|
D:HEM802
|
3.4
|
22.5
|
1.0
|
CB
|
D:CYS420
|
3.4
|
19.7
|
1.0
|
CHA
|
D:HEM802
|
3.4
|
19.1
|
1.0
|
CHD
|
D:HEM802
|
3.5
|
22.2
|
1.0
|
CHB
|
D:HEM802
|
3.5
|
23.4
|
1.0
|
C04
|
D:M5L804
|
4.1
|
23.0
|
1.0
|
CA
|
D:CYS420
|
4.2
|
19.3
|
1.0
|
C03
|
D:M5L804
|
4.2
|
26.1
|
1.0
|
C3D
|
D:HEM802
|
4.3
|
24.4
|
1.0
|
C2D
|
D:HEM802
|
4.3
|
22.0
|
1.0
|
C2C
|
D:HEM802
|
4.3
|
19.8
|
1.0
|
C3C
|
D:HEM802
|
4.3
|
19.6
|
1.0
|
C2B
|
D:HEM802
|
4.3
|
23.6
|
1.0
|
C3B
|
D:HEM802
|
4.3
|
26.9
|
1.0
|
C2A
|
D:HEM802
|
4.3
|
30.7
|
1.0
|
C3A
|
D:HEM802
|
4.4
|
29.8
|
1.0
|
C07
|
D:M5L804
|
4.4
|
24.6
|
1.0
|
NE1
|
D:TRP414
|
4.4
|
21.2
|
1.0
|
C05
|
D:M5L804
|
4.5
|
27.8
|
1.0
|
C02
|
D:M5L804
|
4.6
|
26.9
|
1.0
|
N
|
D:GLY422
|
4.8
|
22.8
|
1.0
|
C06
|
D:M5L804
|
4.9
|
31.1
|
1.0
|
C
|
D:CYS420
|
4.9
|
20.2
|
1.0
|
N01
|
D:M5L804
|
4.9
|
26.9
|
1.0
|
|
Reference:
D.Vasu,
H.Li,
C.D.Hardy,
T.L.Poulos,
R.B.Silverman.
2-Aminopyridines with A Shortened Amino Sidechain As Potent, Selective, and Highly Permeable Human Neuronal Nitric Oxide Synthase Inhibitors. Bioorg.Med.Chem. V. 69 16878 2022.
ISSN: ESSN 1464-3391
PubMed: 35772285
DOI: 10.1016/J.BMC.2022.116878
Page generated: Fri Aug 9 02:44:18 2024
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