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Iron in PDB 7uam: Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine)

Enzymatic activity of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine)

All present enzymatic activity of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine):
1.14.13.39;

Protein crystallography data

The structure of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine), PDB code: 7uam was solved by H.Li, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.13 / 1.84
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.379, 117.663, 165.318, 90, 90.29, 90
R / Rfree (%) 17 / 20.7

Other elements in 7uam:

The structure of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Fluorine (F) 8 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine) (pdb code 7uam). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine), PDB code: 7uam:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7uam

Go back to Iron Binding Sites List in 7uam
Iron binding site 1 out of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe801

b:22.6
occ:1.00
FE A:HEM801 0.0 22.6 1.0
ND A:HEM801 2.0 19.7 1.0
NB A:HEM801 2.1 23.3 1.0
NC A:HEM801 2.1 15.8 1.0
NA A:HEM801 2.1 25.7 1.0
SG A:CYS420 2.4 22.6 1.0
C1D A:HEM801 3.0 20.5 1.0
C4D A:HEM801 3.1 24.1 1.0
C4C A:HEM801 3.1 21.2 1.0
C4B A:HEM801 3.1 29.0 1.0
C1C A:HEM801 3.1 22.9 1.0
C1B A:HEM801 3.1 24.4 1.0
C4A A:HEM801 3.1 31.4 1.0
C1A A:HEM801 3.1 26.8 1.0
CHD A:HEM801 3.4 23.4 1.0
CB A:CYS420 3.4 17.8 1.0
CHC A:HEM801 3.4 21.6 1.0
CHA A:HEM801 3.5 21.7 1.0
CHB A:HEM801 3.5 26.9 1.0
C04 A:M5L803 4.1 23.9 1.0
C03 A:M5L803 4.2 23.9 1.0
CA A:CYS420 4.2 19.8 1.0
C2D A:HEM801 4.2 19.4 1.0
C3D A:HEM801 4.3 28.0 1.0
C3C A:HEM801 4.3 21.4 1.0
C2B A:HEM801 4.3 22.2 1.0
C2C A:HEM801 4.3 22.5 1.0
C3B A:HEM801 4.3 25.6 1.0
C2A A:HEM801 4.4 28.5 1.0
C3A A:HEM801 4.4 28.4 1.0
C07 A:M5L803 4.4 23.6 1.0
NE1 A:TRP414 4.4 19.0 1.0
C05 A:M5L803 4.5 27.6 1.0
C02 A:M5L803 4.6 25.7 1.0
N A:GLY422 4.8 25.4 1.0
C06 A:M5L803 4.9 30.0 1.0
N01 A:M5L803 4.9 29.2 1.0
C A:CYS420 4.9 19.5 1.0

Iron binding site 2 out of 4 in 7uam

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Iron binding site 2 out of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe801

b:21.7
occ:1.00
FE B:HEM801 0.0 21.7 1.0
ND B:HEM801 2.0 19.9 1.0
NC B:HEM801 2.1 16.6 1.0
NB B:HEM801 2.1 25.3 1.0
NA B:HEM801 2.1 22.2 1.0
SG B:CYS420 2.4 22.8 1.0
C1C B:HEM801 3.0 21.8 1.0
C4D B:HEM801 3.1 22.3 1.0
C1D B:HEM801 3.1 24.2 1.0
C4B B:HEM801 3.1 25.9 1.0
C1A B:HEM801 3.1 22.3 1.0
C4C B:HEM801 3.1 19.8 1.0
C1B B:HEM801 3.1 22.7 1.0
C4A B:HEM801 3.1 25.6 1.0
CB B:CYS420 3.4 19.6 1.0
CHC B:HEM801 3.4 22.8 1.0
CHA B:HEM801 3.4 21.2 1.0
CHB B:HEM801 3.5 25.0 1.0
CHD B:HEM801 3.5 23.4 1.0
C04 B:M5L803 4.1 23.1 1.0
CA B:CYS420 4.2 20.2 1.0
C03 B:M5L803 4.2 22.0 1.0
C3D B:HEM801 4.3 21.8 1.0
C2D B:HEM801 4.3 22.6 1.0
C2C B:HEM801 4.3 20.0 1.0
C2A B:HEM801 4.3 25.1 1.0
C3B B:HEM801 4.3 25.7 1.0
C3C B:HEM801 4.3 19.7 1.0
C2B B:HEM801 4.3 21.8 1.0
C3A B:HEM801 4.3 24.9 1.0
C05 B:M5L803 4.4 32.9 1.0
NE1 B:TRP414 4.4 23.8 1.0
C07 B:M5L803 4.4 23.6 1.0
C02 B:M5L803 4.5 25.1 1.0
C06 B:M5L803 4.8 34.5 1.0
N01 B:M5L803 4.8 25.7 1.0
N B:GLY422 4.8 22.6 1.0
C B:CYS420 4.9 19.9 1.0

Iron binding site 3 out of 4 in 7uam

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Iron binding site 3 out of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe801

b:21.1
occ:1.00
FE C:HEM801 0.0 21.1 1.0
ND C:HEM801 2.1 21.8 1.0
NC C:HEM801 2.1 18.5 1.0
NB C:HEM801 2.1 25.4 1.0
NA C:HEM801 2.1 22.1 1.0
SG C:CYS420 2.4 22.2 1.0
C1D C:HEM801 3.1 26.3 1.0
C4D C:HEM801 3.1 22.5 1.0
C1B C:HEM801 3.1 22.9 1.0
C4C C:HEM801 3.1 18.6 1.0
C1C C:HEM801 3.1 22.2 1.0
C4A C:HEM801 3.1 23.7 1.0
C4B C:HEM801 3.1 23.1 1.0
C1A C:HEM801 3.1 20.2 1.0
CB C:CYS420 3.4 16.5 1.0
CHD C:HEM801 3.4 23.4 1.0
CHB C:HEM801 3.4 22.9 1.0
CHC C:HEM801 3.5 18.4 1.0
CHA C:HEM801 3.5 19.6 1.0
C04 C:M5L803 4.1 21.4 1.0
CA C:CYS420 4.2 20.2 1.0
C03 C:M5L803 4.2 18.4 1.0
C3D C:HEM801 4.2 24.7 1.0
C2D C:HEM801 4.3 24.0 1.0
C2B C:HEM801 4.3 20.4 1.0
C2C C:HEM801 4.3 17.6 1.0
C3C C:HEM801 4.3 18.3 1.0
C3B C:HEM801 4.3 20.6 1.0
C2A C:HEM801 4.3 27.6 1.0
C3A C:HEM801 4.3 24.9 1.0
NE1 C:TRP414 4.4 22.6 1.0
C05 C:M5L803 4.5 32.8 1.0
C07 C:M5L803 4.5 19.1 1.0
C02 C:M5L803 4.5 24.9 1.0
N C:GLY422 4.8 20.5 1.0
C06 C:M5L803 4.8 32.0 1.0
N01 C:M5L803 4.8 24.2 1.0
C C:CYS420 4.9 22.1 1.0

Iron binding site 4 out of 4 in 7uam

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Iron binding site 4 out of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (6-(3-(4,4-Difluoropiperidin-1-Yl) Propyl)-4-Methylpyridin-2-Amine) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe802

b:21.7
occ:1.00
FE D:HEM802 0.0 21.7 1.0
ND D:HEM802 2.0 18.6 1.0
NB D:HEM802 2.1 23.4 1.0
NC D:HEM802 2.1 17.2 1.0
NA D:HEM802 2.1 24.9 1.0
SG D:CYS420 2.4 22.9 1.0
C4D D:HEM802 3.0 22.3 1.0
C1C D:HEM802 3.1 20.0 1.0
C1D D:HEM802 3.1 21.8 1.0
C4B D:HEM802 3.1 30.3 1.0
C4C D:HEM802 3.1 20.8 1.0
C1B D:HEM802 3.1 24.0 1.0
C1A D:HEM802 3.1 21.3 1.0
C4A D:HEM802 3.1 25.5 1.0
CHC D:HEM802 3.4 22.5 1.0
CB D:CYS420 3.4 19.7 1.0
CHA D:HEM802 3.4 19.1 1.0
CHD D:HEM802 3.5 22.2 1.0
CHB D:HEM802 3.5 23.4 1.0
C04 D:M5L804 4.1 23.0 1.0
CA D:CYS420 4.2 19.3 1.0
C03 D:M5L804 4.2 26.1 1.0
C3D D:HEM802 4.3 24.4 1.0
C2D D:HEM802 4.3 22.0 1.0
C2C D:HEM802 4.3 19.8 1.0
C3C D:HEM802 4.3 19.6 1.0
C2B D:HEM802 4.3 23.6 1.0
C3B D:HEM802 4.3 26.9 1.0
C2A D:HEM802 4.3 30.7 1.0
C3A D:HEM802 4.4 29.8 1.0
C07 D:M5L804 4.4 24.6 1.0
NE1 D:TRP414 4.4 21.2 1.0
C05 D:M5L804 4.5 27.8 1.0
C02 D:M5L804 4.6 26.9 1.0
N D:GLY422 4.8 22.8 1.0
C06 D:M5L804 4.9 31.1 1.0
C D:CYS420 4.9 20.2 1.0
N01 D:M5L804 4.9 26.9 1.0

Reference:

D.Vasu, H.Li, C.D.Hardy, T.L.Poulos, R.B.Silverman. 2-Aminopyridines with A Shortened Amino Sidechain As Potent, Selective, and Highly Permeable Human Neuronal Nitric Oxide Synthase Inhibitors. Bioorg.Med.Chem. V. 69 16878 2022.
ISSN: ESSN 1464-3391
PubMed: 35772285
DOI: 10.1016/J.BMC.2022.116878
Page generated: Fri Aug 9 02:44:18 2024

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