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Iron in PDB 7udf: The Crystal Structure of F298V CYP199A4 Bound to 4-N-Propylbenzoic Acid

Protein crystallography data

The structure of The Crystal Structure of F298V CYP199A4 Bound to 4-N-Propylbenzoic Acid, PDB code: 7udf was solved by M.N.Podgorski, S.G.Bell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.35 / 1.54
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 44.491, 51.395, 78.779, 90, 92.62, 90
R / Rfree (%) 18.1 / 22.1

Other elements in 7udf:

The structure of The Crystal Structure of F298V CYP199A4 Bound to 4-N-Propylbenzoic Acid also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the The Crystal Structure of F298V CYP199A4 Bound to 4-N-Propylbenzoic Acid (pdb code 7udf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the The Crystal Structure of F298V CYP199A4 Bound to 4-N-Propylbenzoic Acid, PDB code: 7udf:

Iron binding site 1 out of 1 in 7udf

Go back to Iron Binding Sites List in 7udf
Iron binding site 1 out of 1 in the The Crystal Structure of F298V CYP199A4 Bound to 4-N-Propylbenzoic Acid


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Crystal Structure of F298V CYP199A4 Bound to 4-N-Propylbenzoic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:18.9
occ:1.00
FE A:HEM501 0.0 18.9 1.0
NB A:HEM501 2.0 16.9 1.0
ND A:HEM501 2.1 17.0 1.0
NA A:HEM501 2.1 17.7 1.0
NC A:HEM501 2.1 19.4 1.0
SG A:CYS358 2.3 20.6 1.0
C4B A:HEM501 3.0 19.0 1.0
C1C A:HEM501 3.0 15.5 1.0
C1A A:HEM501 3.1 18.7 1.0
C4D A:HEM501 3.1 18.7 1.0
C1D A:HEM501 3.1 18.5 1.0
C1B A:HEM501 3.1 18.4 1.0
C4C A:HEM501 3.1 20.6 1.0
C4A A:HEM501 3.1 20.1 1.0
CB A:CYS358 3.3 21.5 1.0
CHC A:HEM501 3.3 16.6 1.0
CHA A:HEM501 3.4 19.1 1.0
CHD A:HEM501 3.5 17.7 1.0
CHB A:HEM501 3.5 18.4 1.0
H6 A:8ZU502 3.8 24.6 1.0
CA A:CYS358 4.0 16.7 1.0
C3B A:HEM501 4.2 23.9 1.0
C2C A:HEM501 4.2 18.0 1.0
C3C A:HEM501 4.3 19.1 1.0
C2D A:HEM501 4.3 18.1 1.0
C2B A:HEM501 4.3 17.7 1.0
C3D A:HEM501 4.3 20.8 1.0
C2A A:HEM501 4.3 17.4 1.0
C3A A:HEM501 4.3 16.2 1.0
H3 A:8ZU502 4.5 24.0 1.0
C A:CYS358 4.7 20.7 1.0
C8 A:8ZU502 4.8 20.5 1.0
CB A:ALA248 4.8 21.2 1.0
N A:GLY360 4.8 18.9 1.0
O A:ALA248 4.8 22.0 1.0
N A:VAL359 4.9 20.5 1.0
H8 A:8ZU502 5.0 27.2 1.0

Reference:

T.Coleman, D.Z.Doherty, T.Zhang, M.N.Podgorski, R.Qiao, J.H.Z.Lee, J.B.Bruning, J.J.De Voss, W.Zhou, S.G.Bell. Exploring the Factors Which Result in Cytochrome P450 Catalyzed Desaturation Versus Hydroxylation. Chem Asian J V. 17 00986 2022.
ISSN: ESSN 1861-471X
PubMed: 36268769
DOI: 10.1002/ASIA.202200986
Page generated: Fri Aug 9 02:46:46 2024

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