Iron in PDB 7uea: Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1)

The structure of Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1) also contains other interesting chemical elements:

Calcium	(Ca)	2 atoms
Magnesium	(Mg)	54 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1) (pdb code 7uea). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1), PDB code: 7uea:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1) within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe803 b:88.6 occ:1.00 FE1 a:SF4803 0.0 88.6 1.0 SG A:CYS536 2.3 73.2 1.0 S3 a:SF4803 2.3 88.3 1.0 S2 a:SF4803 2.3 76.3 1.0 S4 a:SF4803 2.3 87.6 1.0 FE4 a:SF4803 2.7 76.9 1.0 FE2 a:SF4803 2.7 73.5 1.0 FE3 a:SF4803 2.7 52.3 1.0 CB A:CYS536 3.1 63.1 1.0 CA A:CYS536 3.8 61.7 1.0 S1 a:SF4803 3.9 81.1 1.0 N A:CYS536 4.3 66.1 1.0 SG a:CYS527 4.4 82.8 1.0 CB a:GLU633 4.6 49.7 1.0 OE2 A:GLU633 4.7 59.7 1.0 CD1 a:ILE670 4.7 65.2 1.0 SG A:CYS527 4.7 69.9 1.0 CA a:GLU633 4.8 50.7 1.0 CB A:CYS527 4.8 65.0 1.0 SG a:CYS536 4.9 63.5 1.0 CG A:GLU633 4.9 54.4 1.0 O A:GLY534 5.0 53.6 1.0

Iron binding site 2 out of 12 in the Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1) within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe803 b:73.5 occ:1.00 FE2 a:SF4803 0.0 73.5 1.0 SG A:CYS527 2.3 69.9 1.0 S3 a:SF4803 2.3 88.3 1.0 S1 a:SF4803 2.3 81.1 1.0 S4 a:SF4803 2.3 87.6 1.0 FE1 a:SF4803 2.7 88.6 1.0 FE3 a:SF4803 2.7 52.3 1.0 FE4 a:SF4803 2.7 76.9 1.0 CB A:CYS527 3.2 65.0 1.0 S2 a:SF4803 3.9 76.3 1.0 CD1 A:ILE670 4.5 72.2 1.0 CA A:CYS527 4.6 64.7 1.0 SG A:CYS536 4.6 73.2 1.0 SG a:CYS536 4.7 63.5 1.0 CB a:CYS527 4.7 73.2 1.0 CA A:CYS536 4.8 61.7 1.0 N A:GLY529 4.8 43.0 1.0 CD a:PRO530 4.9 62.9 1.0 SG a:CYS527 4.9 82.8 1.0 N a:PRO530 4.9 58.9 1.0 CA A:GLY529 4.9 47.0 1.0 OG1 A:THR535 4.9 66.7 1.0 CB A:CYS536 5.0 63.1 1.0

Iron binding site 3 out of 12 in the Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1) within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe803 b:52.3 occ:1.00 FE3 a:SF4803 0.0 52.3 1.0 SG a:CYS536 2.3 63.5 1.0 S1 a:SF4803 2.3 81.1 1.0 S2 a:SF4803 2.3 76.3 1.0 S4 a:SF4803 2.3 87.6 1.0 FE4 a:SF4803 2.7 76.9 1.0 FE2 a:SF4803 2.7 73.5 1.0 FE1 a:SF4803 2.7 88.6 1.0 CB a:CYS536 3.4 69.0 1.0 CD1 A:ILE670 3.9 72.2 1.0 S3 a:SF4803 3.9 88.3 1.0 CA a:CYS536 4.2 64.9 1.0 N a:CYS536 4.5 70.6 1.0 SG a:CYS527 4.8 82.8 1.0 CG a:GLU633 4.8 47.3 1.0 CB a:CYS527 4.8 73.2 1.0 SG A:CYS527 4.8 69.9 1.0 OE2 a:GLU633 4.9 50.1 1.0 CB A:GLU633 4.9 45.6 1.0 SG A:CYS536 5.0 73.2 1.0 CB a:GLU633 5.0 49.7 1.0

Iron binding site 4 out of 12 in the Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1) within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe803 b:76.9 occ:1.00 FE4 a:SF4803 0.0 76.9 1.0 SG a:CYS527 2.3 82.8 1.0 S2 a:SF4803 2.3 76.3 1.0 S3 a:SF4803 2.3 88.3 1.0 S1 a:SF4803 2.3 81.1 1.0 CB a:CYS527 2.5 73.2 1.0 FE1 a:SF4803 2.7 88.6 1.0 FE3 a:SF4803 2.7 52.3 1.0 FE2 a:SF4803 2.7 73.5 1.0 CA a:CYS527 3.5 65.2 1.0 S4 a:SF4803 3.9 87.6 1.0 N a:CYS527 4.3 66.8 1.0 CD1 a:ILE670 4.5 65.2 1.0 SG A:CYS536 4.5 73.2 1.0 SG a:CYS536 4.6 63.5 1.0 C a:CYS527 4.6 61.2 1.0 SG A:CYS527 4.8 69.9 1.0 C a:PRO526 4.8 69.4 1.0 O a:PRO526 4.9 77.3 1.0 C A:GLY529 4.9 49.3 1.0 N A:PRO530 5.0 49.9 1.0 O A:GLY529 5.0 56.9 1.0

Iron binding site 5 out of 12 in the Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:46.4 occ:1.00 FE1 B:SF4301 0.0 46.4 1.0 SG B:CYS143 2.3 41.3 1.0 S2 B:SF4301 2.3 49.6 1.0 S3 B:SF4301 2.3 42.8 1.0 S4 B:SF4301 2.3 41.6 1.0 FE4 B:SF4301 2.7 29.3 1.0 FE2 B:SF4301 2.7 17.3 1.0 FE3 B:SF4301 2.7 40.8 1.0 CB B:CYS143 3.5 39.2 1.0 N B:GLY144 3.8 40.3 1.0 N B:CYS143 3.8 33.6 1.0 S1 B:SF4301 3.9 33.8 1.0 CA B:CYS143 4.0 38.3 1.0 CD B:PRO192 4.1 24.7 1.0 C B:CYS143 4.2 34.2 1.0 N B:LEU145 4.3 33.5 1.0 SG B:CYS146 4.7 58.2 1.0 CA B:GLY144 4.7 48.8 1.0 SG B:CYS140 4.8 42.1 1.0 CG B:PRO192 4.8 30.5 1.0 SG B:CYS191 4.8 45.1 1.0 CB B:LEU145 5.0 37.3 1.0

Iron binding site 6 out of 12 in the Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:17.3 occ:1.00 FE2 B:SF4301 0.0 17.3 1.0 SG B:CYS140 2.3 42.1 1.0 S1 B:SF4301 2.3 33.8 1.0 S3 B:SF4301 2.3 42.8 1.0 S4 B:SF4301 2.3 41.6 1.0 FE3 B:SF4301 2.7 40.8 1.0 FE1 B:SF4301 2.7 46.4 1.0 FE4 B:SF4301 2.7 29.3 1.0 SG B:CYS172 3.5 38.3 1.0 CB B:CYS140 3.6 36.1 1.0 S2 B:SF4301 3.9 49.6 1.0 CA B:CYS140 4.1 37.6 1.0 N B:GLY142 4.2 48.0 1.0 N B:VAL141 4.3 43.7 1.0 OG B:SER193 4.4 41.8 1.0 N B:CYS143 4.5 33.6 1.0 C B:CYS140 4.7 45.2 1.0 CA B:GLY142 4.7 49.6 1.0 SG B:CYS191 4.8 45.1 1.0 SG B:CYS143 4.8 41.3 1.0 CB B:CYS172 4.9 52.0 1.0 SG B:CYS146 4.9 58.2 1.0 CG2 B:ILE135 4.9 33.7 1.0

Iron binding site 7 out of 12 in the Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:40.8 occ:1.00 FE3 B:SF4301 0.0 40.8 1.0 SG B:CYS191 2.3 45.1 1.0 S1 B:SF4301 2.3 33.8 1.0 S2 B:SF4301 2.3 49.6 1.0 S4 B:SF4301 2.3 41.6 1.0 FE4 B:SF4301 2.7 29.3 1.0 FE2 B:SF4301 2.7 17.3 1.0 FE1 B:SF4301 2.7 46.4 1.0 CB B:CYS191 3.3 34.0 1.0 OG B:SER193 3.6 41.8 1.0 CA B:CYS191 3.6 23.7 1.0 CD B:PRO192 3.9 24.7 1.0 S3 B:SF4301 3.9 42.8 1.0 N B:PRO192 4.4 19.8 1.0 C B:CYS191 4.4 24.6 1.0 SG B:CYS146 4.6 58.2 1.0 N B:SER193 4.7 33.4 1.0 N B:LEU196 4.7 36.5 1.0 SG B:CYS140 4.8 42.1 1.0 CB B:LEU196 4.8 31.0 1.0 SG B:CYS143 4.8 41.3 1.0 N B:CYS191 4.8 28.4 1.0 CB B:ALA195 4.9 35.3 1.0 N B:ALA195 4.9 19.4 1.0 CG B:PRO192 4.9 30.5 1.0 CB B:SER193 4.9 45.3 1.0

Iron binding site 8 out of 12 in the Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:29.3 occ:1.00 FE4 B:SF4301 0.0 29.3 1.0 SG B:CYS146 2.3 58.2 1.0 S2 B:SF4301 2.3 49.6 1.0 S3 B:SF4301 2.3 42.8 1.0 S1 B:SF4301 2.3 33.8 1.0 FE3 B:SF4301 2.7 40.8 1.0 FE1 B:SF4301 2.7 46.4 1.0 FE2 B:SF4301 2.7 17.3 1.0 CB B:CYS146 3.8 53.6 1.0 S4 B:SF4301 3.9 41.6 1.0 SG B:CYS172 4.0 38.3 1.0 N B:CYS146 4.1 48.2 1.0 CD1 B:ILE135 4.3 52.8 1.0 CA B:CYS146 4.6 47.2 1.0 SG B:CYS143 4.7 41.3 1.0 SG B:CYS191 4.7 45.1 1.0 SG B:CYS140 4.8 42.1 1.0 N B:LEU145 4.8 33.5 1.0 N B:GLY144 4.9 40.3 1.0 CD2 B:LEU196 5.0 47.4 1.0

Iron binding site 9 out of 12 in the Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:101.4 occ:1.00 FE1 B:SF4302 0.0 101.4 1.0 SG B:CYS182 2.3 49.8 1.0 S3 B:SF4302 2.3 87.7 1.0 S4 B:SF4302 2.3 83.7 1.0 S2 B:SF4302 2.3 48.2 1.0 CB B:CYS182 2.4 40.2 1.0 FE4 B:SF4302 2.7 61.8 1.0 FE2 B:SF4302 2.7 77.8 1.0 FE3 B:SF4302 2.7 52.3 1.0 CA B:CYS182 3.5 50.2 1.0 N B:CYS182 3.5 47.1 1.0 S1 B:SF4302 3.9 81.1 1.0 N B:SER183 4.2 49.9 1.0 C B:CYS182 4.3 50.3 1.0 CD B:PRO151 4.6 49.1 1.0 SG B:CYS179 4.6 39.7 1.0 SG B:CYS150 4.7 67.5 1.0 O B:ILE180 4.7 53.4 1.0 C B:SER181 4.8 49.5 1.0 SG B:CYS185 4.9 37.7 1.0 C B:ILE180 5.0 50.4 1.0 N B:ALA184 5.0 34.9 1.0 N B:ILE180 5.0 52.2 1.0

Iron binding site 10 out of 12 in the Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Photosynthetic Assembly of Chlorobaculum Tepidum (Rc-FMO1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:77.8 occ:1.00 FE2 B:SF4302 0.0 77.8 1.0 SG B:CYS150 2.3 67.5 1.0 S4 B:SF4302 2.3 83.7 1.0 S3 B:SF4302 2.3 87.7 1.0 S1 B:SF4302 2.3 81.1 1.0 FE3 B:SF4302 2.7 52.3 1.0 FE1 B:SF4302 2.7 101.4 1.0 FE4 B:SF4302 2.7 61.8 1.0 CB B:CYS150 3.5 65.2 1.0 CB B:ALA156 3.7 54.6 1.0 S2 B:SF4302 3.9 48.2 1.0 CA B:CYS150 4.1 64.2 1.0 CD B:PRO151 4.2 49.1 1.0 SG B:CYS185 4.5 37.7 1.0 CG1 B:VAL154 4.5 53.1 1.0 SG B:CYS182 4.6 49.8 1.0 N B:ALA156 4.7 50.8 1.0 CB B:VAL154 4.7 45.1 1.0 CA B:ALA156 4.8 53.2 1.0 N B:PRO151 4.8 54.5 1.0 SG B:CYS179 4.9 39.7 1.0 C B:CYS150 4.9 64.7 1.0 CG1 B:ILE157 4.9 47.2 1.0

R.Puskar, C.Du Truong, K.Swain, S.Chowdhury, K.Y.Chan, S.Li, K.W.Cheng, T.Y.Wang, Y.P.Poh, Y.Mazor, H.Liu, T.F.Chou, B.L.Nannenga, P.L.Chiu. Molecular Asymmetry of A Photosynthetic Supercomplex From Green Sulfur Bacteria. Nat Commun V. 13 5824 2022.
ISSN: ESSN 2041-1723
PubMed: 36192412
DOI: 10.1038/S41467-022-33505-4