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Iron in PDB 7usn: Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1

Enzymatic activity of Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1

All present enzymatic activity of Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1:
1.16.3.1;

Protein crystallography data

The structure of Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1, PDB code: 7usn was solved by T.R.Malcolm, M.J.Maher, S.S.M.Mubarak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.56 / 1.79
Space group P 2 3 1
Cell size a, b, c (Å), α, β, γ (°) 227.763, 227.763, 227.763, 90, 90, 90
R / Rfree (%) 16.6 / 18.9

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iron atom in the Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1 (pdb code 7usn). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1, PDB code: 7usn:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 16 in 7usn

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Iron binding site 1 out of 16 in the Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe207

b:19.1
occ:0.50
 OE1 A:GLU23 1.9 26.1 1.0
OE2 A:GLU58 2.0 30.2 1.0
O A:HOH319 2.1 30.0 1.0
ND1 A:HIS61 2.2 25.4 1.0
O A:HOH318 2.2 40.2 1.0
CD A:GLU23 2.9 25.2 1.0
CD A:GLU58 2.9 27.0 1.0
CE1 A:HIS61 3.1 25.6 1.0
CG A:HIS61 3.2 22.7 1.0
OE1 A:GLU58 3.2 32.4 1.0
OE2 A:GLU23 3.3 29.3 1.0
CB A:HIS61 3.5 21.5 1.0
ND2 A:ASN106 3.8 32.9 1.0
OE1 A:GLN137 4.1 38.1 1.0
O A:HOH381 4.1 32.8 1.0
CG A:GLU23 4.2 22.1 1.0
NE2 A:HIS61 4.2 24.8 1.0
CG A:GLU58 4.3 23.8 1.0
CD2 A:HIS61 4.3 24.1 1.0
CA A:GLU58 4.5 20.9 1.0
CG A:ASN106 4.6 29.2 1.0
CB A:GLU58 4.7 21.4 1.0
CB A:GLU23 4.7 21.2 1.0
CB A:ASN106 4.9 23.6 1.0
O A:GLU58 5.0 19.8 1.0
CA A:GLU23 5.0 19.8 1.0

Iron binding site 2 out of 16 in 7usn

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Iron binding site 2 out of 16 in the Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe204

b:22.8
occ:0.50
 OE2 B:GLU58 1.9 28.7 1.0
OE1 B:GLU23 2.0 29.7 1.0
O B:HOH327 2.2 40.3 1.0
O B:HOH335 2.2 34.7 1.0
ND1 B:HIS61 2.2 28.1 1.0
CD B:GLU58 2.8 27.8 1.0
CD B:GLU23 3.0 28.3 1.0
CE1 B:HIS61 3.1 28.5 1.0
OE1 B:GLU58 3.1 32.6 1.0
CG B:HIS61 3.3 25.5 1.0
OE2 B:GLU23 3.3 33.1 1.0
CB B:HIS61 3.6 23.4 1.0
ND2 B:ASN106 3.6 36.9 1.0
OE1 B:GLN137 4.1 41.4 1.0
CG B:GLU58 4.2 24.9 1.0
O B:HOH425 4.2 36.8 1.0
NE2 B:HIS61 4.2 29.2 1.0
CG B:GLU23 4.3 26.7 1.0
CD2 B:HIS61 4.3 27.8 1.0
CA B:GLU58 4.4 22.1 1.0
CB B:GLU58 4.6 24.6 1.0
CG B:ASN106 4.6 31.9 1.0
CB B:GLU23 4.7 25.2 1.0
O B:HOH307 4.8 41.7 1.0
O B:GLU58 4.9 22.0 1.0
CB B:ASN106 4.9 29.0 1.0
CA B:GLU23 5.0 24.3 1.0

Iron binding site 3 out of 16 in 7usn

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Iron binding site 3 out of 16 in the Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe203

b:23.4
occ:0.50
 OE2 C:GLU58 1.9 32.0 1.0
OE1 C:GLU23 1.9 31.5 1.0
O C:HOH341 2.2 41.9 1.0
O C:HOH333 2.2 39.1 1.0
ND1 C:HIS61 2.3 28.6 1.0
CD C:GLU58 2.9 29.7 1.0
CD C:GLU23 2.9 28.8 1.0
CE1 C:HIS61 3.2 29.2 1.0
OE1 C:GLU58 3.2 31.0 1.0
OE2 C:GLU23 3.3 34.0 1.0
CG C:HIS61 3.3 28.2 1.0
CB C:HIS61 3.6 25.2 1.0
ND2 C:ASN106 3.7 35.7 1.0
OE1 C:GLN137 4.2 42.9 1.0
CG C:GLU58 4.2 26.4 1.0
O C:HOH301 4.2 47.4 1.0
CG C:GLU23 4.3 25.6 1.0
NE2 C:HIS61 4.3 28.3 1.0
CD2 C:HIS61 4.4 27.9 1.0
O C:HOH427 4.4 38.6 1.0
CA C:GLU58 4.4 23.9 1.0
CG C:ASN106 4.5 31.6 1.0
CB C:GLU58 4.6 25.3 1.0
O C:HOH406 4.6 46.5 1.0
CB C:GLU23 4.8 24.3 1.0
CB C:ASN106 4.8 25.9 1.0
O C:GLU58 4.9 22.4 1.0

Iron binding site 4 out of 16 in 7usn

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Iron binding site 4 out of 16 in the Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe204

b:23.1
occ:0.50
 OE2 D:GLU58 1.9 29.7 1.0
OE1 D:GLU23 2.0 28.4 1.0
O D:HOH353 2.1 36.3 1.0
ND1 D:HIS61 2.3 27.9 1.0
O D:HOH311 2.4 37.0 1.0
CD D:GLU58 2.8 27.2 1.0
CD D:GLU23 3.0 28.8 1.0
OE1 D:GLU58 3.1 31.8 1.0
CE1 D:HIS61 3.2 26.2 1.0
OE2 D:GLU23 3.3 34.7 1.0
CG D:HIS61 3.3 25.6 1.0
CB D:HIS61 3.6 23.3 1.0
ND2 D:ASN106 3.8 32.4 1.0
O D:HOH438 4.1 34.8 1.0
CG D:GLU58 4.2 24.1 1.0
OE1 D:GLN137 4.2 40.3 1.0
CG D:GLU23 4.3 24.9 1.0
O D:HOH418 4.3 45.9 1.0
NE2 D:HIS61 4.3 26.1 1.0
CD2 D:HIS61 4.4 27.6 1.0
CA D:GLU58 4.4 21.0 1.0
CG D:ASN106 4.6 28.9 1.0
CB D:GLU58 4.6 23.0 1.0
O D:HOH302 4.7 40.5 1.0
CB D:GLU23 4.8 22.3 1.0
CB D:ASN106 4.8 25.3 1.0
O D:GLU58 4.9 20.2 1.0

Iron binding site 5 out of 16 in 7usn

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Iron binding site 5 out of 16 in the Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe203

b:21.4
occ:0.50
 OE1 E:GLU23 1.9 27.6 1.0
OE2 E:GLU58 2.0 27.6 1.0
O E:HOH341 2.1 34.4 1.0
ND1 E:HIS61 2.2 28.4 1.0
O E:HOH324 2.5 40.3 1.0
CD E:GLU58 2.8 27.2 1.0
CD E:GLU23 2.9 26.6 1.0
OE1 E:GLU58 3.1 32.1 1.0
CE1 E:HIS61 3.1 27.6 1.0
CG E:HIS61 3.2 25.3 1.0
OE2 E:GLU23 3.3 32.7 1.0
CB E:HIS61 3.6 23.2 1.0
ND2 E:ASN106 3.8 34.2 1.0
O E:HOH409 4.1 40.6 1.0
OE1 E:GLN137 4.1 41.9 1.0
CG E:GLU58 4.2 25.8 1.0
NE2 E:HIS61 4.2 27.9 1.0
CG E:GLU23 4.3 24.9 1.0
CD2 E:HIS61 4.3 27.1 1.0
CA E:GLU58 4.4 22.6 1.0
O E:HOH302 4.5 40.3 1.0
CB E:GLU58 4.6 23.9 1.0
CG E:ASN106 4.7 30.5 1.0
CB E:GLU23 4.7 22.6 1.0
O E:GLU58 4.9 20.5 1.0
CB E:ASN106 4.9 26.8 1.0
CA E:GLU23 5.0 21.6 1.0

Iron binding site 6 out of 16 in 7usn

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Iron binding site 6 out of 16 in the Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe204

b:24.5
occ:0.50
 OE1 F:GLU23 1.9 30.8 1.0
OE2 F:GLU58 2.0 31.0 1.0
O F:HOH368 2.2 42.2 1.0
O F:HOH315 2.2 36.4 1.0
ND1 F:HIS61 2.2 29.8 1.0
CD F:GLU58 2.8 30.6 1.0
CD F:GLU23 2.9 31.2 1.0
CE1 F:HIS61 3.1 30.7 1.0
OE1 F:GLU58 3.1 35.0 1.0
CG F:HIS61 3.3 27.6 1.0
OE2 F:GLU23 3.3 33.6 1.0
CB F:HIS61 3.6 26.7 1.0
ND2 F:ASN106 3.8 38.0 1.0
OE1 F:GLN137 4.2 45.0 1.0
CG F:GLU58 4.2 26.9 1.0
CG F:GLU23 4.2 27.6 1.0
NE2 F:HIS61 4.2 29.2 1.0
CA F:GLU58 4.3 23.4 1.0
CD2 F:HIS61 4.3 28.7 1.0
O F:HOH382 4.4 38.6 1.0
CB F:GLU58 4.5 25.5 1.0
CG F:ASN106 4.6 35.0 1.0
CB F:GLU23 4.6 24.9 1.0
O F:GLU58 4.9 22.6 1.0
CB F:ASN106 4.9 29.2 1.0
CA F:GLU23 4.9 24.5 1.0

Iron binding site 7 out of 16 in 7usn

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Iron binding site 7 out of 16 in the Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe204

b:22.0
occ:0.50
 OE2 G:GLU58 1.9 30.2 1.0
OE1 G:GLU23 1.9 28.2 1.0
ND1 G:HIS61 2.1 28.3 1.0
O G:HOH318 2.2 31.3 1.0
O G:HOH319 2.3 37.6 1.0
CD G:GLU58 2.8 29.1 1.0
CD G:GLU23 2.9 26.5 1.0
CE1 G:HIS61 3.0 26.5 1.0
OE1 G:GLU58 3.1 33.3 1.0
CG G:HIS61 3.2 25.9 1.0
OE2 G:GLU23 3.3 30.8 1.0
CB G:HIS61 3.6 24.1 1.0
ND2 G:ASN106 3.9 32.9 1.0
OE1 G:GLN137 4.1 41.1 1.0
NE2 G:HIS61 4.2 26.9 1.0
CG G:GLU58 4.2 25.9 1.0
CG G:GLU23 4.3 24.9 1.0
CD2 G:HIS61 4.3 27.1 1.0
O G:HOH375 4.3 35.1 1.0
CA G:GLU58 4.4 20.7 1.0
CB G:GLU58 4.6 23.8 1.0
CG G:ASN106 4.6 29.8 1.0
CB G:GLU23 4.7 21.9 1.0
O G:GLU58 4.9 19.3 1.0
CB G:ASN106 4.9 24.6 1.0
CA G:GLU23 5.0 21.2 1.0

Iron binding site 8 out of 16 in 7usn

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Iron binding site 8 out of 16 in the Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Fe203

b:22.7
occ:0.50
 OE1 O:GLU23 1.9 29.2 1.0
OE2 O:GLU58 2.0 32.5 1.0
O O:HOH315 2.1 33.1 1.0
ND1 O:HIS61 2.2 28.4 1.0
O O:HOH326 2.3 48.0 1.0
CD O:GLU58 2.9 30.1 1.0
CD O:GLU23 2.9 27.1 1.0
OE1 O:GLU58 3.1 35.0 1.0
CE1 O:HIS61 3.1 27.6 1.0
CG O:HIS61 3.3 26.9 1.0
OE2 O:GLU23 3.3 34.1 1.0
CB O:HIS61 3.6 24.6 1.0
ND2 O:ASN106 3.8 33.4 1.0
OE1 O:GLN137 4.2 42.0 1.0
CG O:GLU58 4.2 26.6 1.0
CG O:GLU23 4.2 25.5 1.0
O O:HOH420 4.3 35.9 1.0
NE2 O:HIS61 4.3 27.8 1.0
CD2 O:HIS61 4.4 26.9 1.0
CA O:GLU58 4.4 23.2 1.0
CB O:GLU58 4.6 25.2 1.0
CB O:GLU23 4.6 22.5 1.0
CG O:ASN106 4.7 30.0 1.0
O O:HOH305 4.8 36.5 1.0
O O:GLU58 4.9 23.1 1.0
CB O:ASN106 4.9 25.5 1.0
CA O:GLU23 4.9 23.1 1.0

Iron binding site 9 out of 16 in 7usn

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Iron binding site 9 out of 16 in the Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe202

b:30.5
occ:0.50
 OE1 H:GLU23 1.9 35.7 1.0
OE2 H:GLU58 2.0 34.7 1.0
O H:HOH314 2.2 40.0 1.0
O H:HOH321 2.2 48.0 1.0
ND1 H:HIS61 2.3 32.5 1.0
CD H:GLU23 2.9 33.0 1.0
CD H:GLU58 3.0 36.7 1.0
OE2 H:GLU23 3.2 36.2 1.0
CE1 H:HIS61 3.3 32.1 1.0
CG H:HIS61 3.3 31.0 1.0
OE1 H:GLU58 3.3 40.5 1.0
CB H:HIS61 3.6 30.6 1.0
ND2 H:ASN106 3.9 42.3 1.0
CG H:GLU23 4.2 32.6 1.0
OE1 H:GLN137 4.2 44.2 1.0
O H:HOH375 4.2 42.9 1.0
CG H:GLU58 4.3 33.3 1.0
NE2 H:HIS61 4.4 30.6 1.0
CD2 H:HIS61 4.4 32.5 1.0
O H:HOH397 4.4 52.4 1.0
CA H:GLU58 4.5 30.2 1.0
CG H:ASN106 4.6 38.7 1.0
CB H:GLU58 4.7 33.5 1.0
CB H:GLU23 4.7 31.1 1.0
CB H:ASN106 4.8 36.0 1.0
O H:GLU58 4.9 27.1 1.0
CA H:GLU23 5.0 30.6 1.0

Iron binding site 10 out of 16 in 7usn

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Iron binding site 10 out of 16 in the Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Crystal Structure of Ferritin 1 From Caenorhabditis Elegans, Ftn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:32.4
occ:0.50
 OE2 I:GLU58 1.9 39.8 1.0
OE1 I:GLU23 1.9 39.0 1.0
O I:HOH2039 2.0 50.7 1.0
ND1 I:HIS61 2.1 38.2 1.0
O I:HOH2012 2.4 47.2 1.0
CD I:GLU58 2.8 39.3 1.0
CD I:GLU23 2.9 39.1 1.0
CE1 I:HIS61 3.1 38.4 1.0
OE1 I:GLU58 3.1 42.1 1.0
CG I:HIS61 3.2 37.0 1.0
OE2 I:GLU23 3.3 43.4 1.0
CB I:HIS61 3.5 34.4 1.0
ND2 I:ASN106 3.6 45.6 1.0
CG I:GLU58 4.2 36.8 1.0
NE2 I:HIS61 4.2 38.4 1.0
OE1 I:GLN137 4.2 48.3 1.0
CG I:GLU23 4.2 35.0 1.0
O I:HOH2076 4.3 40.7 1.0
CD2 I:HIS61 4.3 36.1 1.0
CA I:GLU58 4.3 33.7 1.0
CB I:GLU58 4.5 34.3 1.0
CG I:ASN106 4.6 41.0 1.0
CB I:GLU23 4.7 34.4 1.0
O I:GLU58 5.0 31.2 1.0
CB I:ASN106 5.0 35.8 1.0

Reference:

S.S.M.Mubarak, T.R.Malcolm, H.G.Brown, E.Hanssen, M.J.Maher, G.Mccoll, G.N.L.Jameson. Biochemical Characterization of Caenorhabditis Elegans Ferritins. Biochemistry 2023.
ISSN: ISSN 0006-2960
PubMed: 37014173
DOI: 10.1021/ACS.BIOCHEM.3C00005
Page generated: Fri Aug 9 03:04:21 2024

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