Iron in PDB 7uus: The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk

All present enzymatic activity of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk:
1.12.99.6;

The structure of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk also contains other interesting chemical elements:

Nickel	(Ni)	8 atoms
Magnesium	(Mg)	8 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80;

Binding sites:

The binding sites of Iron atom in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk (pdb code 7uus). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 80 binding sites of Iron where determined in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk, PDB code: 7uus:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 80 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe602 b:11.2 occ:1.00 FE A:FCO602 0.0 11.2 1.0 C1 A:FCO602 1.9 11.2 1.0 C3 A:FCO602 1.9 11.2 1.0 C2 A:FCO602 1.9 11.2 1.0 SG A:CYS65 2.3 7.5 1.0 SG A:CYS513 2.4 9.3 1.0 NI A:3NI601 2.7 30.8 1.0 O3 A:FCO602 2.9 11.2 1.0 N1 A:FCO602 3.0 11.2 1.0 N2 A:FCO602 3.0 11.2 1.0 CB A:CYS65 3.3 7.5 1.0 CB A:CYS513 3.5 9.3 1.0 CD A:ARG443 4.0 10.6 1.0 NE2 A:HIS69 4.2 6.2 1.0 CB A:CYS510 4.2 11.0 1.0 SG A:CYS510 4.4 11.0 1.0 CG A:PRO465 4.4 9.6 1.0 CB A:ALA441 4.5 9.4 1.0 CD A:PRO465 4.5 9.6 1.0 SG A:CYS62 4.6 7.3 1.0 CB A:CYS62 4.7 7.3 1.0 NH1 A:ARG443 4.7 10.6 1.0 CA A:CYS65 4.7 7.5 1.0 CD2 A:HIS69 4.8 6.2 1.0 CA A:CYS513 4.8 9.3 1.0 CB A:ARG443 4.9 10.6 1.0 CG A:ARG443 5.0 10.6 1.0 NE A:ARG443 5.0 10.6 1.0

Iron binding site 2 out of 80 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe402 b:20.0 occ:1.00 FE1 B:F3S402 0.0 20.0 1.0 SG B:CYS113 2.2 6.1 1.0 S3 B:F3S402 2.3 20.0 1.0 S1 B:F3S402 2.3 20.0 1.0 S2 B:F3S402 2.3 20.0 1.0 FE3 B:F3S402 2.6 20.0 1.0 FE4 B:F3S402 2.7 20.0 1.0 CB B:CYS113 3.1 6.1 1.0 S4 B:F3S402 3.9 20.0 1.0 N B:CYS113 3.9 6.1 1.0 ND2 B:ASN15 4.1 6.0 1.0 CA B:CYS113 4.1 6.1 1.0 SG B:CYS161 4.5 4.4 1.0 N B:CYS12 4.6 6.6 1.0 O B:GLY10 4.7 8.0 1.0 SG B:CYS12 4.7 6.6 1.0 CA B:GLY73 4.8 6.8 1.0 CA B:ALA11 4.8 7.8 1.0 N B:GLY73 4.9 6.8 1.0

Iron binding site 3 out of 80 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe402 b:20.0 occ:1.00 FE3 B:F3S402 0.0 20.0 1.0 SG B:CYS12 2.2 6.6 1.0 S4 B:F3S402 2.3 20.0 1.0 S1 B:F3S402 2.3 20.0 1.0 S3 B:F3S402 2.3 20.0 1.0 FE1 B:F3S402 2.6 20.0 1.0 FE4 B:F3S402 2.6 20.0 1.0 CB B:CYS12 3.3 6.6 1.0 N B:CYS12 3.6 6.6 1.0 S2 B:F3S402 3.8 20.0 1.0 CA B:CYS12 4.0 6.6 1.0 N B:GLY14 4.0 5.9 1.0 ND2 B:ASN15 4.0 6.0 1.0 NE2 A:DHI166 4.1 4.9 1.0 CA B:GLY14 4.4 5.9 1.0 C B:CYS12 4.4 6.6 1.0 N B:SER13 4.4 7.2 1.0 CG A:ARG60 4.6 5.2 1.0 SG B:CYS113 4.6 6.1 1.0 O A:ARG60 4.7 5.2 1.0 SG B:CYS161 4.7 4.4 1.0 C B:ALA11 4.7 7.8 1.0 N B:ASN15 4.7 6.0 1.0 CD2 A:DHI166 4.9 4.9 1.0 CB A:ARG60 4.9 5.2 1.0

Iron binding site 4 out of 80 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe402 b:20.0 occ:1.00 FE4 B:F3S402 0.0 20.0 1.0 SG B:CYS161 2.3 4.4 1.0 S2 B:F3S402 2.3 20.0 1.0 S4 B:F3S402 2.3 20.0 1.0 S3 B:F3S402 2.3 20.0 1.0 FE3 B:F3S402 2.6 20.0 1.0 FE1 B:F3S402 2.7 20.0 1.0 CA B:CYS161 3.3 4.4 1.0 CB B:CYS161 3.3 4.4 1.0 C B:CYS161 3.8 4.4 1.0 CG A:ARG60 3.9 5.2 1.0 S1 B:F3S402 3.9 20.0 1.0 O B:CYS161 4.3 4.4 1.0 N B:PRO162 4.3 4.0 1.0 ND2 B:ASN15 4.3 6.0 1.0 SG B:CYS113 4.3 6.1 1.0 CA B:PRO162 4.4 4.0 1.0 NE2 A:DHI166 4.5 4.9 1.0 CD2 A:DHI166 4.5 4.9 1.0 SG B:CYS12 4.5 6.6 1.0 O B:GLY160 4.5 4.6 1.0 NE A:ARG60 4.6 5.2 1.0 N B:CYS161 4.7 4.4 1.0 CD A:ARG60 4.9 5.2 1.0 CB A:ARG60 4.9 5.2 1.0

Iron binding site 5 out of 80 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe403 b:20.0 occ:1.00 FE1 B:F3S403 0.0 20.0 1.0 SG B:CYS263 2.2 4.9 1.0 S1 B:F3S403 2.3 20.0 1.0 S2 B:F3S403 2.3 20.0 1.0 S3 B:F3S403 2.3 20.0 1.0 FE3 B:F3S403 2.6 20.0 1.0 FE4 B:F3S403 2.7 20.0 1.0 CB B:CYS263 3.2 4.9 1.0 NZ B:LYS253 3.6 3.4 1.0 N B:CYS263 3.6 4.9 1.0 S4 B:F3S403 3.8 20.0 1.0 CA B:CYS263 3.8 4.9 1.0 N B:THR264 4.2 5.3 1.0 C B:CYS263 4.3 4.9 1.0 CG2 B:THR264 4.4 5.3 1.0 SG B:CYS242 4.5 3.8 1.0 SG B:CYS260 4.6 4.0 1.0 CE B:LYS253 4.7 3.4 1.0 C B:GLY262 4.7 4.8 1.0 N B:GLY262 4.9 4.8 1.0

Iron binding site 6 out of 80 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe403 b:20.0 occ:1.00 FE3 B:F3S403 0.0 20.0 1.0 SG B:CYS260 2.2 4.0 1.0 S3 B:F3S403 2.3 20.0 1.0 S4 B:F3S403 2.3 20.0 1.0 S1 B:F3S403 2.3 20.0 1.0 FE1 B:F3S403 2.6 20.0 1.0 FE4 B:F3S403 2.7 20.0 1.0 CB B:CYS260 3.2 4.0 1.0 CA B:CYS260 3.6 4.0 1.0 OG1 B:THR199 3.7 4.0 1.0 N B:LEU261 3.8 4.4 1.0 N B:GLY262 3.9 4.8 1.0 S2 B:F3S403 3.9 20.0 1.0 C B:CYS260 4.1 4.0 1.0 CG2 B:THR199 4.1 4.0 1.0 N B:CYS263 4.2 4.9 1.0 NZ B:LYS253 4.4 3.4 1.0 CB B:THR199 4.5 4.0 1.0 CD B:LYS253 4.5 3.4 1.0 CA B:GLY262 4.5 4.8 1.0 CG2 B:THR238 4.6 5.0 1.0 SG B:CYS263 4.7 4.9 1.0 SG B:CYS242 4.8 3.8 1.0 C B:LEU261 4.8 4.4 1.0 C B:GLY262 4.8 4.8 1.0 CA B:LEU261 4.9 4.4 1.0 CE B:LYS253 4.9 3.4 1.0 N B:CYS260 4.9 4.0 1.0

Iron binding site 7 out of 80 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe403 b:20.0 occ:1.00 FE4 B:F3S403 0.0 20.0 1.0 SG B:CYS242 2.2 3.8 1.0 S4 B:F3S403 2.3 20.0 1.0 S2 B:F3S403 2.3 20.0 1.0 S3 B:F3S403 2.3 20.0 1.0 FE1 B:F3S403 2.7 20.0 1.0 FE3 B:F3S403 2.7 20.0 1.0 CB B:CYS242 3.2 3.8 1.0 S1 B:F3S403 4.0 20.0 1.0 OG1 B:THR199 4.0 4.0 1.0 OG B:SER240 4.1 4.7 1.0 NE1 B:TRP247 4.2 4.2 1.0 NZ B:LYS253 4.4 3.4 1.0 CB B:SER240 4.4 4.7 1.0 CG2 B:THR199 4.5 4.0 1.0 CA B:CYS242 4.5 3.8 1.0 SG B:CYS263 4.6 4.9 1.0 SG B:CYS260 4.6 4.0 1.0 CH2 B:TRP167 4.7 4.8 1.0 OE1 A:GLN163 4.8 4.2 1.0 CB B:THR199 4.9 4.0 1.0 CG2 B:THR264 4.9 5.3 1.0 CE2 B:TRP247 5.0 4.2 1.0

Iron binding site 8 out of 80 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe404 b:20.0 occ:1.00 FE1 B:F3S404 0.0 20.0 1.0 S2 B:F3S404 2.3 20.0 1.0 S1 B:F3S404 2.3 20.0 1.0 SG B:CYS203 2.3 3.5 1.0 S3 B:F3S404 2.3 20.0 1.0 FE3 B:F3S404 2.7 20.0 1.0 FE4 B:F3S404 2.7 20.0 1.0 CB B:CYS203 3.0 3.5 1.0 S4 B:F3S404 3.9 20.0 1.0 CB B:THR254 4.0 3.4 1.0 CB B:ARG205 4.1 4.2 1.0 OG1 B:THR254 4.1 3.4 1.0 CG B:GLN200 4.4 4.2 1.0 CA B:CYS203 4.5 3.5 1.0 CG2 B:THR254 4.5 3.4 1.0 N B:ARG205 4.6 4.2 1.0 C B:ARG205 4.6 4.2 1.0 CA B:GLN200 4.6 4.2 1.0 CA B:ARG205 4.6 4.2 1.0 CD B:ARG205 4.7 4.2 1.0 SG B:CYS233 4.7 4.7 1.0 N B:VAL206 4.7 4.4 1.0 CG B:ARG205 4.7 4.2 1.0 NE2 B:GLN200 4.8 4.2 1.0 SG B:CYS226 4.9 5.3 1.0 CG2 B:VAL206 4.9 4.4 1.0 CB B:GLN200 4.9 4.2 1.0 C B:CYS203 5.0 3.5 1.0

Iron binding site 9 out of 80 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe404 b:20.0 occ:1.00 FE3 B:F3S404 0.0 20.0 1.0 S1 B:F3S404 2.3 20.0 1.0 SG B:CYS226 2.3 5.3 1.0 S4 B:F3S404 2.3 20.0 1.0 S3 B:F3S404 2.3 20.0 1.0 FE4 B:F3S404 2.6 20.0 1.0 FE1 B:F3S404 2.7 20.0 1.0 CB B:CYS226 3.3 5.3 1.0 N B:LEU227 3.8 5.1 1.0 S2 B:F3S404 3.9 20.0 1.0 CA B:CYS226 3.9 5.3 1.0 NE2 B:GLN200 4.1 4.2 1.0 N B:PHE228 4.2 7.0 1.0 C B:CYS226 4.2 5.3 1.0 CB B:PHE209 4.3 6.2 1.0 CD1 B:PHE209 4.3 6.2 1.0 CB B:ARG205 4.3 4.2 1.0 CB B:PHE228 4.4 7.0 1.0 O B:ARG205 4.6 4.2 1.0 SG B:CYS233 4.7 4.7 1.0 CG B:PHE209 4.7 6.2 1.0 SG B:CYS203 4.7 3.5 1.0 C B:ARG205 4.8 4.2 1.0 CA B:PHE228 4.8 7.0 1.0 CB B:CYS233 4.8 4.7 1.0 CA B:LEU227 4.8 5.1 1.0 C B:LEU227 4.9 5.1 1.0

Iron binding site 10 out of 80 in the The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of The Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Full Complex Focused Refinement of Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe404 b:20.0 occ:1.00 FE4 B:F3S404 0.0 20.0 1.0 SG B:CYS233 2.2 4.7 1.0 S2 B:F3S404 2.3 20.0 1.0 S4 B:F3S404 2.3 20.0 1.0 S3 B:F3S404 2.3 20.0 1.0 FE3 B:F3S404 2.6 20.0 1.0 FE1 B:F3S404 2.7 20.0 1.0 CB B:CYS233 3.1 4.7 1.0 S1 B:F3S404 3.9 20.0 1.0 CG2 B:THR254 4.1 3.4 1.0 CA B:GLY235 4.1 4.7 1.0 N B:GLY235 4.2 4.7 1.0 CB B:THR254 4.4 3.4 1.0 CD B:PRO236 4.5 5.6 1.0 CA B:CYS233 4.5 4.7 1.0 SG B:CYS226 4.5 5.3 1.0 CB B:LEU227 4.6 5.1 1.0 N B:LEU227 4.7 5.1 1.0 N B:PHE228 4.7 7.0 1.0 SG B:CYS203 4.7 3.5 1.0 C B:CYS233 4.7 4.7 1.0 O B:CYS233 5.0 4.7 1.0

R.Grinter, A.Kropp, H.Venugopal, M.Senger, J.Badley, P.Cabotaje, S.T.Stripp, C.K.Barlow, M.Belousoff, G.M.Cook, R.B.Schittenhelm, S.Khalid, G.Berggren, G.Greening. An Oxygen-Insensitive, Quinone-Transporting Hydrogenase Enables Bacteria to Extract Energy From Air To Be Published.