Iron in PDB 7v4v: Polylysine Induce Assembly of Thermotoga Maritima Ferritin
Enzymatic activity of Polylysine Induce Assembly of Thermotoga Maritima Ferritin
All present enzymatic activity of Polylysine Induce Assembly of Thermotoga Maritima Ferritin:
1.16.3.2;
Protein crystallography data
The structure of Polylysine Induce Assembly of Thermotoga Maritima Ferritin, PDB code: 7v4v
was solved by
X.Zhang,
G.Zhao,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
38.69 /
2.30
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
84.808,
94.495,
108.121,
90,
90,
90
|
|
R / Rfree (%)
|
20.1 /
25.9
|
Iron Binding Sites:
The binding sites of Iron atom in the Polylysine Induce Assembly of Thermotoga Maritima Ferritin
(pdb code 7v4v). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Polylysine Induce Assembly of Thermotoga Maritima Ferritin, PDB code: 7v4v:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 7v4v
Go back to
Iron Binding Sites List in 7v4v
Iron binding site 1 out
of 8 in the Polylysine Induce Assembly of Thermotoga Maritima Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Polylysine Induce Assembly of Thermotoga Maritima Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe201
b:47.3
occ:1.00
|
O
|
H:HOH306
|
1.9
|
45.6
|
1.0
|
|
OE1
|
H:GLU19
|
2.1
|
44.0
|
1.0
|
|
ND1
|
H:HIS55
|
2.2
|
33.6
|
1.0
|
|
OE1
|
H:GLU52
|
2.2
|
41.9
|
1.0
|
|
CE1
|
H:HIS55
|
3.1
|
40.1
|
1.0
|
|
CD
|
H:GLU19
|
3.1
|
45.1
|
1.0
|
|
HE1
|
H:HIS55
|
3.2
|
48.1
|
1.0
|
|
CG
|
H:HIS55
|
3.2
|
41.6
|
1.0
|
|
FE
|
H:FE202
|
3.3
|
50.2
|
1.0
|
|
CD
|
H:GLU52
|
3.3
|
39.8
|
1.0
|
|
HB2
|
H:HIS55
|
3.4
|
41.5
|
1.0
|
|
HB3
|
H:HIS55
|
3.5
|
41.5
|
1.0
|
|
OE2
|
H:GLU19
|
3.5
|
61.1
|
1.0
|
|
CB
|
H:HIS55
|
3.6
|
34.5
|
1.0
|
|
HA
|
H:GLU52
|
3.6
|
45.1
|
1.0
|
|
HG11
|
H:VAL99
|
3.7
|
45.3
|
1.0
|
|
OE2
|
H:GLU52
|
3.8
|
42.3
|
1.0
|
|
OE1
|
H:GLN129
|
4.0
|
43.7
|
1.0
|
|
NE2
|
H:HIS55
|
4.2
|
39.6
|
1.0
|
|
CD2
|
H:HIS55
|
4.3
|
43.2
|
1.0
|
|
HB3
|
H:GLU52
|
4.3
|
45.6
|
1.0
|
|
HB3
|
H:GLU19
|
4.3
|
43.9
|
1.0
|
|
CG
|
H:GLU19
|
4.4
|
39.6
|
1.0
|
|
OE1
|
H:GLU132
|
4.5
|
52.9
|
1.0
|
|
CA
|
H:GLU52
|
4.5
|
37.6
|
1.0
|
|
HG3
|
H:GLU19
|
4.5
|
47.5
|
1.0
|
|
CG1
|
H:VAL99
|
4.6
|
37.7
|
1.0
|
|
HA
|
H:GLU19
|
4.6
|
38.1
|
1.0
|
|
CG
|
H:GLU52
|
4.6
|
47.1
|
1.0
|
|
CB
|
H:GLU52
|
4.7
|
38.0
|
1.0
|
|
HG12
|
H:VAL99
|
4.7
|
45.3
|
1.0
|
|
HG
|
H:SER22
|
4.7
|
61.8
|
1.0
|
|
HG3
|
H:GLU132
|
4.8
|
57.8
|
1.0
|
|
CB
|
H:GLU19
|
4.8
|
36.6
|
1.0
|
|
HG21
|
H:VAL99
|
4.9
|
49.8
|
1.0
|
|
HG13
|
H:VAL99
|
4.9
|
45.3
|
1.0
|
|
O
|
H:GLU52
|
5.0
|
39.7
|
1.0
|
|
HB2
|
H:SER22
|
5.0
|
43.7
|
1.0
|
|
HE2
|
H:HIS55
|
5.0
|
47.5
|
1.0
|
|
CD
|
H:GLU132
|
5.0
|
51.0
|
1.0
|
|
Iron binding site 2 out
of 8 in 7v4v
Go back to
Iron Binding Sites List in 7v4v
Iron binding site 2 out
of 8 in the Polylysine Induce Assembly of Thermotoga Maritima Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Polylysine Induce Assembly of Thermotoga Maritima Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe202
b:50.2
occ:1.00
|
O
|
H:HOH306
|
2.0
|
45.6
|
1.0
|
|
OE2
|
H:GLU96
|
2.0
|
48.6
|
1.0
|
|
OE1
|
H:GLU132
|
2.0
|
52.9
|
1.0
|
|
OE2
|
H:GLU52
|
2.3
|
42.3
|
1.0
|
|
OE1
|
H:GLU96
|
2.6
|
42.0
|
1.0
|
|
CD
|
H:GLU96
|
2.6
|
46.0
|
1.0
|
|
CD
|
H:GLU52
|
3.0
|
39.8
|
1.0
|
|
OE1
|
H:GLU52
|
3.0
|
41.9
|
1.0
|
|
CD
|
H:GLU132
|
3.1
|
51.0
|
1.0
|
|
FE
|
H:FE201
|
3.3
|
47.3
|
1.0
|
|
HB3
|
H:GLU132
|
3.5
|
54.2
|
1.0
|
|
HE21
|
H:GLN48
|
3.5
|
51.3
|
1.0
|
|
HH
|
H:TYR26
|
3.6
|
58.7
|
1.0
|
|
HE2
|
H:TYR26
|
3.6
|
56.6
|
1.0
|
|
HG3
|
H:GLU132
|
3.6
|
57.8
|
1.0
|
|
HE1
|
H:HIS55
|
3.7
|
48.1
|
1.0
|
|
CG
|
H:GLU132
|
3.8
|
48.2
|
1.0
|
|
OE1
|
H:GLN129
|
3.9
|
43.7
|
1.0
|
|
HE22
|
H:GLN129
|
3.9
|
47.4
|
1.0
|
|
CG
|
H:GLU96
|
4.1
|
43.0
|
1.0
|
|
NE2
|
H:GLN48
|
4.1
|
42.7
|
1.0
|
|
OE2
|
H:GLU132
|
4.1
|
51.5
|
1.0
|
|
CB
|
H:GLU132
|
4.1
|
45.2
|
1.0
|
|
HE22
|
H:GLN48
|
4.1
|
51.3
|
1.0
|
|
CE1
|
H:HIS55
|
4.3
|
40.1
|
1.0
|
|
HG3
|
H:GLU96
|
4.3
|
51.6
|
1.0
|
|
HG11
|
H:VAL99
|
4.4
|
45.3
|
1.0
|
|
OH
|
H:TYR26
|
4.4
|
48.9
|
1.0
|
|
CG
|
H:GLU52
|
4.4
|
47.1
|
1.0
|
|
ND1
|
H:HIS55
|
4.4
|
33.6
|
1.0
|
|
HG2
|
H:GLU96
|
4.4
|
51.6
|
1.0
|
|
CE2
|
H:TYR26
|
4.4
|
47.1
|
1.0
|
|
HG21
|
H:VAL99
|
4.5
|
49.8
|
1.0
|
|
HB2
|
H:GLU132
|
4.5
|
54.2
|
1.0
|
|
NE2
|
H:GLN129
|
4.6
|
39.5
|
1.0
|
|
HG3
|
H:GLU52
|
4.6
|
56.5
|
1.0
|
|
HB3
|
H:SER22
|
4.7
|
43.7
|
1.0
|
|
HG2
|
H:GLU132
|
4.7
|
57.8
|
1.0
|
|
HG2
|
H:GLU52
|
4.7
|
56.5
|
1.0
|
|
CD
|
H:GLN129
|
4.7
|
46.1
|
1.0
|
|
O
|
H:HOH310
|
4.7
|
39.1
|
1.0
|
|
HA
|
H:GLU96
|
4.8
|
50.9
|
1.0
|
|
OE1
|
H:GLU19
|
4.9
|
44.0
|
1.0
|
|
CZ
|
H:TYR26
|
4.9
|
49.8
|
1.0
|
|
HB
|
H:VAL99
|
4.9
|
46.3
|
1.0
|
|
HG
|
H:SER22
|
5.0
|
61.8
|
1.0
|
|
HB3
|
H:GLU96
|
5.0
|
45.0
|
1.0
|
|
Iron binding site 3 out
of 8 in 7v4v
Go back to
Iron Binding Sites List in 7v4v
Iron binding site 3 out
of 8 in the Polylysine Induce Assembly of Thermotoga Maritima Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Polylysine Induce Assembly of Thermotoga Maritima Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:51.0
occ:1.00
|
OE1
|
A:GLU19
|
2.2
|
40.3
|
1.0
|
|
ND1
|
A:HIS55
|
2.3
|
36.9
|
1.0
|
|
OE1
|
A:GLU52
|
2.3
|
47.8
|
1.0
|
|
O
|
A:HOH306
|
2.4
|
46.0
|
1.0
|
|
CD
|
A:GLU19
|
3.0
|
42.5
|
1.0
|
|
OE2
|
A:GLU19
|
3.1
|
41.4
|
1.0
|
|
CE1
|
A:HIS55
|
3.2
|
42.0
|
1.0
|
|
FE
|
A:FE202
|
3.2
|
64.0
|
1.0
|
|
CG
|
A:HIS55
|
3.3
|
33.6
|
1.0
|
|
CD
|
A:GLU52
|
3.3
|
40.6
|
1.0
|
|
HE1
|
A:HIS55
|
3.3
|
50.5
|
1.0
|
|
HB2
|
A:HIS55
|
3.4
|
43.1
|
1.0
|
|
HB3
|
A:HIS55
|
3.4
|
43.1
|
1.0
|
|
OE2
|
A:GLU52
|
3.5
|
47.2
|
1.0
|
|
CB
|
A:HIS55
|
3.6
|
35.9
|
1.0
|
|
HA
|
A:GLU52
|
3.7
|
51.8
|
1.0
|
|
OE1
|
A:GLN129
|
3.7
|
60.2
|
1.0
|
|
HG11
|
A:VAL99
|
3.8
|
56.5
|
1.0
|
|
NE2
|
A:HIS55
|
4.3
|
38.4
|
1.0
|
|
CD2
|
A:HIS55
|
4.4
|
45.9
|
1.0
|
|
CG
|
A:GLU19
|
4.4
|
37.3
|
1.0
|
|
HB3
|
A:GLU19
|
4.5
|
54.6
|
1.0
|
|
OE1
|
A:GLU132
|
4.5
|
56.6
|
1.0
|
|
HA
|
A:GLU19
|
4.5
|
45.0
|
1.0
|
|
HE1
|
A:PHE125
|
4.5
|
65.4
|
1.0
|
|
CA
|
A:GLU52
|
4.6
|
43.1
|
1.0
|
|
CG1
|
A:VAL99
|
4.6
|
47.1
|
1.0
|
|
CG
|
A:GLU52
|
4.7
|
42.4
|
1.0
|
|
HB3
|
A:GLU52
|
4.7
|
51.4
|
1.0
|
|
HG3
|
A:GLU19
|
4.7
|
44.8
|
1.0
|
|
HG12
|
A:VAL99
|
4.8
|
56.5
|
1.0
|
|
HD1
|
A:PHE125
|
4.8
|
58.9
|
1.0
|
|
OE1
|
A:GLU96
|
4.9
|
49.2
|
1.0
|
|
CB
|
A:GLU19
|
4.9
|
45.5
|
1.0
|
|
CB
|
A:GLU52
|
4.9
|
42.8
|
1.0
|
|
HB2
|
A:SER22
|
4.9
|
51.6
|
1.0
|
|
CD
|
A:GLN129
|
4.9
|
60.7
|
1.0
|
|
HG13
|
A:VAL99
|
5.0
|
56.5
|
1.0
|
|
Iron binding site 4 out
of 8 in 7v4v
Go back to
Iron Binding Sites List in 7v4v
Iron binding site 4 out
of 8 in the Polylysine Induce Assembly of Thermotoga Maritima Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Polylysine Induce Assembly of Thermotoga Maritima Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe202
b:64.0
occ:1.00
|
OE2
|
A:GLU96
|
2.2
|
53.6
|
1.0
|
|
OE2
|
A:GLU52
|
2.3
|
47.2
|
1.0
|
|
OE1
|
A:GLU96
|
2.4
|
49.2
|
1.0
|
|
OE1
|
A:GLU132
|
2.5
|
56.6
|
1.0
|
|
CD
|
A:GLU96
|
2.6
|
46.4
|
1.0
|
|
CD
|
A:GLU52
|
3.0
|
40.6
|
1.0
|
|
OE1
|
A:GLU52
|
3.1
|
47.8
|
1.0
|
|
FE
|
A:FE201
|
3.2
|
51.0
|
1.0
|
|
HH
|
A:TYR26
|
3.4
|
62.1
|
1.0
|
|
HE2
|
A:TYR26
|
3.4
|
48.9
|
1.0
|
|
HE21
|
A:GLN48
|
3.6
|
49.9
|
1.0
|
|
CD
|
A:GLU132
|
3.6
|
62.3
|
1.0
|
|
OE1
|
A:GLN129
|
3.8
|
60.2
|
1.0
|
|
HB3
|
A:GLU132
|
3.8
|
79.1
|
1.0
|
|
HE1
|
A:HIS55
|
4.0
|
50.5
|
1.0
|
|
CG
|
A:GLU96
|
4.0
|
50.7
|
1.0
|
|
HG3
|
A:GLU132
|
4.0
|
85.6
|
1.0
|
|
HG3
|
A:GLU96
|
4.1
|
60.8
|
1.0
|
|
NE2
|
A:GLN48
|
4.2
|
41.6
|
1.0
|
|
CG
|
A:GLU132
|
4.2
|
71.3
|
1.0
|
|
HG11
|
A:VAL99
|
4.2
|
56.5
|
1.0
|
|
OH
|
A:TYR26
|
4.3
|
51.7
|
1.0
|
|
HE22
|
A:GLN48
|
4.3
|
49.9
|
1.0
|
|
HG2
|
A:GLU96
|
4.3
|
60.8
|
1.0
|
|
CE2
|
A:TYR26
|
4.4
|
40.8
|
1.0
|
|
HE22
|
A:GLN129
|
4.4
|
68.7
|
1.0
|
|
CB
|
A:GLU132
|
4.4
|
65.9
|
1.0
|
|
CG
|
A:GLU52
|
4.5
|
42.4
|
1.0
|
|
HB3
|
A:SER22
|
4.5
|
51.6
|
1.0
|
|
ND1
|
A:HIS55
|
4.5
|
36.9
|
1.0
|
|
CE1
|
A:HIS55
|
4.5
|
42.0
|
1.0
|
|
OE2
|
A:GLU132
|
4.6
|
74.0
|
1.0
|
|
HG21
|
A:VAL99
|
4.6
|
54.5
|
1.0
|
|
HG3
|
A:GLU52
|
4.6
|
50.9
|
1.0
|
|
HB2
|
A:GLU132
|
4.7
|
79.1
|
1.0
|
|
HA
|
A:GLU96
|
4.7
|
57.0
|
1.0
|
|
CD
|
A:GLN129
|
4.7
|
60.7
|
1.0
|
|
O
|
A:HOH306
|
4.7
|
46.0
|
1.0
|
|
HG2
|
A:GLU52
|
4.7
|
50.9
|
1.0
|
|
OE1
|
A:GLU19
|
4.8
|
40.3
|
1.0
|
|
HG
|
A:SER22
|
4.8
|
60.6
|
1.0
|
|
NE2
|
A:GLN129
|
4.9
|
57.2
|
1.0
|
|
CZ
|
A:TYR26
|
4.9
|
44.6
|
1.0
|
|
Iron binding site 5 out
of 8 in 7v4v
Go back to
Iron Binding Sites List in 7v4v
Iron binding site 5 out
of 8 in the Polylysine Induce Assembly of Thermotoga Maritima Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Polylysine Induce Assembly of Thermotoga Maritima Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:50.2
occ:1.00
|
OE1
|
B:GLU19
|
2.2
|
42.9
|
1.0
|
|
OE1
|
B:GLU52
|
2.2
|
44.5
|
1.0
|
|
ND1
|
B:HIS55
|
2.3
|
46.8
|
1.0
|
|
O
|
B:HOH316
|
2.4
|
50.5
|
1.0
|
|
FE
|
B:FE202
|
3.0
|
66.9
|
1.0
|
|
CD
|
B:GLU19
|
3.1
|
49.1
|
1.0
|
|
CD
|
B:GLU52
|
3.1
|
38.2
|
1.0
|
|
CE1
|
B:HIS55
|
3.2
|
51.7
|
1.0
|
|
HE1
|
B:HIS55
|
3.3
|
62.0
|
1.0
|
|
OE2
|
B:GLU19
|
3.3
|
53.4
|
1.0
|
|
OE2
|
B:GLU52
|
3.3
|
43.9
|
1.0
|
|
CG
|
B:HIS55
|
3.3
|
41.7
|
1.0
|
|
HB3
|
B:HIS55
|
3.5
|
51.4
|
1.0
|
|
HB2
|
B:HIS55
|
3.5
|
51.4
|
1.0
|
|
OE1
|
B:GLN129
|
3.6
|
68.0
|
1.0
|
|
CB
|
B:HIS55
|
3.7
|
42.8
|
1.0
|
|
HA
|
B:GLU52
|
3.7
|
49.2
|
1.0
|
|
HG11
|
B:VAL99
|
3.9
|
49.8
|
1.0
|
|
NE2
|
B:HIS55
|
4.3
|
51.5
|
1.0
|
|
OE1
|
B:GLU132
|
4.4
|
56.1
|
1.0
|
|
CD2
|
B:HIS55
|
4.4
|
44.2
|
1.0
|
|
CG
|
B:GLU52
|
4.4
|
37.6
|
1.0
|
|
HB3
|
B:GLU19
|
4.5
|
54.3
|
1.0
|
|
CG
|
B:GLU19
|
4.5
|
44.5
|
1.0
|
|
HB3
|
B:GLU52
|
4.6
|
46.5
|
1.0
|
|
CA
|
B:GLU52
|
4.6
|
41.0
|
1.0
|
|
HE1
|
B:PHE125
|
4.6
|
65.5
|
1.0
|
|
HA
|
B:GLU19
|
4.6
|
56.5
|
1.0
|
|
HG3
|
B:GLU132
|
4.7
|
73.2
|
1.0
|
|
CD
|
B:GLN129
|
4.8
|
57.0
|
1.0
|
|
CB
|
B:GLU52
|
4.8
|
38.7
|
1.0
|
|
CG1
|
B:VAL99
|
4.8
|
41.5
|
1.0
|
|
HG3
|
B:GLU19
|
4.8
|
53.5
|
1.0
|
|
HD1
|
B:PHE125
|
4.8
|
70.9
|
1.0
|
|
OE1
|
B:GLU96
|
4.9
|
49.1
|
1.0
|
|
HG12
|
B:VAL99
|
4.9
|
49.8
|
1.0
|
|
HB2
|
B:SER22
|
4.9
|
55.5
|
1.0
|
|
CB
|
B:GLU19
|
4.9
|
45.2
|
1.0
|
|
HG2
|
B:GLU52
|
4.9
|
45.1
|
1.0
|
|
HG3
|
B:GLU52
|
5.0
|
45.1
|
1.0
|
|
Iron binding site 6 out
of 8 in 7v4v
Go back to
Iron Binding Sites List in 7v4v
Iron binding site 6 out
of 8 in the Polylysine Induce Assembly of Thermotoga Maritima Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Polylysine Induce Assembly of Thermotoga Maritima Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe202
b:66.9
occ:1.00
|
OE2
|
B:GLU52
|
2.2
|
43.9
|
1.0
|
|
OE2
|
B:GLU96
|
2.2
|
61.5
|
1.0
|
|
OE1
|
B:GLU132
|
2.3
|
56.1
|
1.0
|
|
OE1
|
B:GLU96
|
2.4
|
49.1
|
1.0
|
|
CD
|
B:GLU96
|
2.6
|
56.8
|
1.0
|
|
FE
|
B:FE201
|
3.0
|
50.2
|
1.0
|
|
CD
|
B:GLU52
|
3.1
|
38.2
|
1.0
|
|
OE1
|
B:GLN129
|
3.3
|
68.0
|
1.0
|
|
OE1
|
B:GLU52
|
3.3
|
44.5
|
1.0
|
|
CD
|
B:GLU132
|
3.4
|
59.9
|
1.0
|
|
HG3
|
B:GLU132
|
3.5
|
73.2
|
1.0
|
|
HE21
|
B:GLN48
|
3.6
|
53.8
|
1.0
|
|
HB3
|
B:GLU132
|
3.7
|
70.1
|
1.0
|
|
HE2
|
B:TYR26
|
3.8
|
53.3
|
1.0
|
|
HH
|
B:TYR26
|
3.9
|
69.1
|
1.0
|
|
CG
|
B:GLU132
|
3.9
|
61.0
|
1.0
|
|
HE1
|
B:HIS55
|
3.9
|
62.0
|
1.0
|
|
HE22
|
B:GLN129
|
3.9
|
62.2
|
1.0
|
|
CG
|
B:GLU96
|
4.1
|
52.5
|
1.0
|
|
CD
|
B:GLN129
|
4.3
|
57.0
|
1.0
|
|
NE2
|
B:GLN48
|
4.3
|
44.9
|
1.0
|
|
HG11
|
B:VAL99
|
4.3
|
49.8
|
1.0
|
|
HE22
|
B:GLN48
|
4.3
|
53.8
|
1.0
|
|
CB
|
B:GLU132
|
4.3
|
58.4
|
1.0
|
|
HG3
|
B:GLU96
|
4.3
|
63.0
|
1.0
|
|
OE2
|
B:GLU132
|
4.4
|
64.3
|
1.0
|
|
ND1
|
B:HIS55
|
4.4
|
46.8
|
1.0
|
|
NE2
|
B:GLN129
|
4.4
|
51.8
|
1.0
|
|
O
|
B:HOH316
|
4.5
|
50.5
|
1.0
|
|
HG2
|
B:GLU96
|
4.5
|
63.0
|
1.0
|
|
CE1
|
B:HIS55
|
4.5
|
51.7
|
1.0
|
|
CG
|
B:GLU52
|
4.5
|
37.6
|
1.0
|
|
HG21
|
B:VAL99
|
4.5
|
52.9
|
1.0
|
|
HA
|
B:GLU96
|
4.6
|
68.1
|
1.0
|
|
HB3
|
B:SER22
|
4.6
|
55.5
|
1.0
|
|
CE2
|
B:TYR26
|
4.6
|
44.4
|
1.0
|
|
OH
|
B:TYR26
|
4.6
|
57.6
|
1.0
|
|
HG2
|
B:GLU52
|
4.7
|
45.1
|
1.0
|
|
HB2
|
B:GLU132
|
4.7
|
70.1
|
1.0
|
|
HG3
|
B:GLU52
|
4.7
|
45.1
|
1.0
|
|
OE1
|
B:GLU19
|
4.7
|
42.9
|
1.0
|
|
HG2
|
B:GLU132
|
4.8
|
73.2
|
1.0
|
|
HB3
|
B:GLU96
|
4.9
|
66.9
|
1.0
|
|
CB
|
B:GLU96
|
5.0
|
55.8
|
1.0
|
|
Iron binding site 7 out
of 8 in 7v4v
Go back to
Iron Binding Sites List in 7v4v
Iron binding site 7 out
of 8 in the Polylysine Induce Assembly of Thermotoga Maritima Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Polylysine Induce Assembly of Thermotoga Maritima Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:64.2
occ:1.00
|
OE1
|
C:GLU19
|
2.2
|
50.7
|
1.0
|
|
HE22
|
C:GLN129
|
2.2
|
96.5
|
1.0
|
|
OE1
|
C:GLU52
|
2.3
|
55.0
|
1.0
|
|
ND1
|
C:HIS55
|
2.4
|
54.7
|
1.0
|
|
HE21
|
C:GLN129
|
2.5
|
96.5
|
1.0
|
|
FE
|
C:FE202
|
2.6
|
96.3
|
1.0
|
|
NE2
|
C:GLN129
|
2.7
|
80.4
|
1.0
|
|
CD
|
C:GLU52
|
3.0
|
46.5
|
1.0
|
|
CD
|
C:GLU19
|
3.2
|
54.4
|
1.0
|
|
OE2
|
C:GLU52
|
3.2
|
56.6
|
1.0
|
|
CE1
|
C:HIS55
|
3.3
|
66.8
|
1.0
|
|
HE1
|
C:HIS55
|
3.4
|
80.1
|
1.0
|
|
CG
|
C:HIS55
|
3.4
|
48.9
|
1.0
|
|
OE2
|
C:GLU19
|
3.4
|
56.5
|
1.0
|
|
HB2
|
C:HIS55
|
3.5
|
72.1
|
1.0
|
|
HZ
|
C:PHE125
|
3.5
|
97.4
|
1.0
|
|
HB3
|
C:HIS55
|
3.5
|
72.1
|
1.0
|
|
HA
|
C:GLU52
|
3.7
|
56.0
|
1.0
|
|
CB
|
C:HIS55
|
3.7
|
60.1
|
1.0
|
|
CD
|
C:GLN129
|
4.0
|
80.6
|
1.0
|
|
HG11
|
C:VAL99
|
4.1
|
69.2
|
1.0
|
|
CZ
|
C:PHE125
|
4.4
|
81.2
|
1.0
|
|
CG
|
C:GLU52
|
4.4
|
48.1
|
1.0
|
|
HB3
|
C:GLU52
|
4.5
|
53.2
|
1.0
|
|
NE2
|
C:HIS55
|
4.5
|
61.9
|
1.0
|
|
HB3
|
C:GLU19
|
4.5
|
50.5
|
1.0
|
|
HG
|
C:SER22
|
4.5
|
64.5
|
1.0
|
|
CG
|
C:GLU19
|
4.5
|
53.1
|
1.0
|
|
CA
|
C:GLU52
|
4.5
|
46.7
|
1.0
|
|
CD2
|
C:HIS55
|
4.5
|
55.5
|
1.0
|
|
HA
|
C:GLU19
|
4.6
|
51.9
|
1.0
|
|
HB2
|
C:SER22
|
4.6
|
52.0
|
1.0
|
|
HG2
|
C:GLN129
|
4.6
|
97.4
|
1.0
|
|
HE1
|
C:PHE125
|
4.7
|
78.8
|
1.0
|
|
OE1
|
C:GLN129
|
4.7
|
84.9
|
1.0
|
|
CB
|
C:GLU52
|
4.7
|
44.3
|
1.0
|
|
HG3
|
C:GLU52
|
4.8
|
57.8
|
1.0
|
|
HG3
|
C:GLU132
|
4.8
|
79.8
|
1.0
|
|
OE1
|
C:GLU96
|
4.8
|
51.0
|
1.0
|
|
HG3
|
C:GLU19
|
4.8
|
63.8
|
1.0
|
|
CG
|
C:GLN129
|
4.9
|
81.2
|
1.0
|
|
CB
|
C:GLU19
|
5.0
|
42.0
|
1.0
|
|
CE1
|
C:PHE125
|
5.0
|
65.6
|
1.0
|
|
O
|
C:GLU52
|
5.0
|
42.7
|
1.0
|
|
HG2
|
C:GLU52
|
5.0
|
57.8
|
1.0
|
|
Iron binding site 8 out
of 8 in 7v4v
Go back to
Iron Binding Sites List in 7v4v
Iron binding site 8 out
of 8 in the Polylysine Induce Assembly of Thermotoga Maritima Ferritin
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Polylysine Induce Assembly of Thermotoga Maritima Ferritin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe202
b:96.3
occ:1.00
|
HE22
|
C:GLN129
|
2.1
|
96.5
|
1.0
|
|
OE1
|
C:GLU96
|
2.5
|
51.0
|
1.0
|
|
FE
|
C:FE201
|
2.6
|
64.2
|
1.0
|
|
OE1
|
C:GLU52
|
2.7
|
55.0
|
1.0
|
|
OE2
|
C:GLU96
|
3.0
|
50.7
|
1.0
|
|
NE2
|
C:GLN129
|
3.0
|
80.4
|
1.0
|
|
CD
|
C:GLU96
|
3.1
|
53.1
|
1.0
|
|
HG11
|
C:VAL99
|
3.2
|
69.2
|
1.0
|
|
HG
|
C:SER22
|
3.5
|
64.5
|
1.0
|
|
HE21
|
C:GLN129
|
3.5
|
96.5
|
1.0
|
|
CD
|
C:GLU52
|
3.5
|
46.5
|
1.0
|
|
HG21
|
C:VAL99
|
3.7
|
67.9
|
1.0
|
|
OE1
|
C:GLN129
|
3.7
|
84.9
|
1.0
|
|
OE2
|
C:GLU52
|
3.8
|
56.6
|
1.0
|
|
CD
|
C:GLN129
|
3.8
|
80.6
|
1.0
|
|
HB3
|
C:SER22
|
3.9
|
52.0
|
1.0
|
|
CG1
|
C:VAL99
|
3.9
|
57.6
|
1.0
|
|
OE1
|
C:GLU19
|
4.0
|
50.7
|
1.0
|
|
HB
|
C:VAL99
|
4.0
|
68.0
|
1.0
|
|
HG12
|
C:VAL99
|
4.1
|
69.2
|
1.0
|
|
HE2
|
C:TYR26
|
4.1
|
50.0
|
1.0
|
|
OG
|
C:SER22
|
4.2
|
53.8
|
1.0
|
|
HA
|
C:GLU96
|
4.3
|
60.3
|
1.0
|
|
HB2
|
C:SER22
|
4.3
|
52.0
|
1.0
|
|
CB
|
C:VAL99
|
4.4
|
56.6
|
1.0
|
|
CB
|
C:SER22
|
4.4
|
43.3
|
1.0
|
|
HD2
|
C:HIS95
|
4.4
|
48.1
|
1.0
|
|
CG2
|
C:VAL99
|
4.4
|
56.5
|
1.0
|
|
HH
|
C:TYR26
|
4.5
|
61.3
|
1.0
|
|
OE2
|
C:GLU19
|
4.5
|
56.5
|
1.0
|
|
CG
|
C:GLU96
|
4.6
|
52.4
|
1.0
|
|
CD
|
C:GLU19
|
4.7
|
54.4
|
1.0
|
|
NE2
|
C:HIS95
|
4.7
|
42.6
|
1.0
|
|
HG13
|
C:VAL99
|
4.7
|
69.2
|
1.0
|
|
ND1
|
C:HIS55
|
4.8
|
54.7
|
1.0
|
|
HG3
|
C:GLU52
|
4.8
|
57.8
|
1.0
|
|
CG
|
C:GLU52
|
4.8
|
48.1
|
1.0
|
|
CD2
|
C:HIS95
|
4.8
|
40.1
|
1.0
|
|
HE1
|
C:HIS55
|
4.9
|
80.1
|
1.0
|
|
HG23
|
C:VAL99
|
5.0
|
67.9
|
1.0
|
|
Reference:
X.Zhang,
G.Zhao.
Polylysine Induce Assembly of Thermotoga Maritima Ferritin To Be Published.
Page generated: Wed Apr 5 05:54:03 2023
|
